Wall clock time and date at job start Tue Mar 31 2020 04:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47091 * 2 1 4 4 H 1.09005 * 109.47378 * 54.99605 * 3 2 1 5 5 O 1.42900 * 109.47296 * 294.99931 * 3 2 1 6 6 C 1.42893 * 114.00499 * 150.00006 * 5 3 2 7 7 C 1.50699 * 109.47278 * 175.00194 * 3 2 1 8 8 O 1.21280 * 120.00110 * 114.99953 * 7 3 2 9 9 N 1.34782 * 119.99421 * 294.99654 * 7 3 2 10 10 C 1.46502 * 119.99505 * 180.02562 * 9 7 3 11 11 H 1.08999 * 110.97233 * 37.69099 * 10 9 7 12 12 C 1.55015 * 111.10497 * 273.54773 * 10 9 7 13 13 O 1.43917 * 105.18159 * 206.03102 * 12 10 9 14 14 C 1.42398 * 109.55371 * 24.29162 * 13 12 10 15 15 C 1.52704 * 116.13840 * 129.84608 * 14 13 12 16 16 N 1.47208 * 87.79523 * 90.70190 * 15 14 13 17 17 C 1.36934 * 135.97507 * 206.46253 * 16 15 14 18 18 H 1.07998 * 120.00059 * 7.51672 * 17 16 15 19 19 C 1.38816 * 120.00154 * 187.52467 * 17 16 15 20 20 N 1.31624 * 119.99715 * 174.12082 * 19 17 16 21 21 Si 1.86799 * 119.99955 * 353.84732 * 19 17 16 22 22 H 1.48493 * 109.46938 * 175.43977 * 21 19 17 23 23 H 1.48493 * 109.46944 * 295.44096 * 21 19 17 24 24 H 1.48503 * 109.46803 * 55.43971 * 21 19 17 25 25 C 1.47216 * 88.05393 * 26.71122 * 16 15 14 26 26 C 1.53652 * 108.53693 * 358.08775 * 14 13 12 27 27 H 1.09002 * 109.47191 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47111 * 299.99900 * 1 2 3 29 29 H 1.08998 * 109.47267 * 60.00049 * 1 2 3 30 30 H 1.09000 * 109.47133 * 239.99543 * 2 1 3 31 31 H 1.09003 * 109.47106 * 119.99484 * 2 1 3 32 32 H 1.09006 * 109.47196 * 299.99838 * 6 5 3 33 33 H 1.09002 * 109.47237 * 59.99798 * 6 5 3 34 34 H 1.08993 * 109.47591 * 180.02562 * 6 5 3 35 35 H 0.96990 * 120.00043 * 0.02562 * 9 7 3 36 36 H 1.08996 * 110.30459 * 87.10586 * 12 10 9 37 37 H 1.08999 * 110.38726 * 324.99605 * 12 10 9 38 38 H 1.08999 * 113.49854 * 335.97224 * 15 14 13 39 39 H 1.08997 * 113.55753 * 205.44334 * 15 14 13 40 40 H 0.96994 * 120.00393 * 354.65585 * 20 19 17 41 41 H 1.09000 * 113.49658 * 88.01942 * 25 16 15 42 42 H 1.08997 * 113.49463 * 218.55560 * 25 16 15 43 43 H 1.09000 * 110.93496 * 97.29713 * 26 14 13 44 44 H 1.08997 * 110.93236 * 220.96014 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6620 2.0814 -1.2210 6 6 1.4559 3.4902 -1.1004 7 6 3.5419 1.4443 0.1238 8 8 4.2250 1.8611 -0.7876 9 7 4.1259 0.9828 1.2474 10 6 5.5860 0.9851 1.3680 11 1 6.0139 1.8762 0.9088 12 6 6.1981 -0.3038 0.7622 13 8 7.4457 -0.4902 1.4551 14 6 7.3881 0.1562 2.7226 15 6 7.8086 -0.6843 3.9261 16 7 9.1787 -0.1854 3.7240 17 6 10.4417 -0.6372 3.9993 18 1 10.5869 -1.6394 4.3747 19 6 11.5356 0.1929 3.7959 20 7 12.7362 -0.1975 4.1680 21 14 11.3046 1.8609 2.9871 22 1 12.5964 2.5932 2.9854 23 1 10.8403 1.6730 1.5892 24 1 10.2936 2.6421 3.7438 25 6 8.5961 1.0150 3.1020 26 6 6.0253 0.8537 2.8537 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 0.6617 3.6808 -0.3785 33 1 2.3768 3.9644 -0.7610 34 1 1.1715 3.9002 -2.0694 35 1 3.5796 0.6492 1.9761 36 1 6.3744 -0.1731 -0.3055 37 1 5.5390 -1.1546 0.9347 38 1 7.7084 -1.7574 3.7631 39 1 7.3607 -0.3566 4.8642 40 1 12.8468 -1.0299 4.6535 41 1 8.3612 1.8041 3.8163 42 1 9.1611 1.3770 2.2431 43 1 5.3238 0.2356 3.4140 44 1 6.1329 1.8348 3.3162 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673550531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:57 Heat of formation + Delta-G solvation = -57.013921 kcal Electronic energy + Delta-G solvation = -24946.829066 eV Core-core repulsion = 21288.007355 eV Total energy + Delta-G solvation = -3658.821711 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.72578 -39.86458 -37.86047 -36.56490 -34.84250 -33.89401 -32.33540 -30.81571 -28.76687 -27.89453 -26.31675 -25.68779 -25.47337 -22.83165 -21.91908 -21.23174 -20.68547 -19.33215 -18.02200 -17.44863 -17.42811 -16.46037 -16.12461 -15.77149 -15.29115 -15.01059 -14.70679 -14.51037 -14.26456 -13.93276 -13.84735 -13.67654 -13.50015 -13.10107 -12.89172 -12.61440 -12.46750 -12.15140 -11.93925 -11.80713 -11.67924 -11.54656 -11.23883 -11.00149 -10.85255 -10.83471 -10.43726 -10.29233 -9.71034 -9.59148 -9.27503 -9.10085 -8.87302 -8.76769 -7.13466 -6.24496 -3.17746 2.28228 2.66886 3.35829 3.43940 3.51163 3.69190 3.95031 4.18059 4.38414 4.40968 4.48650 4.65055 4.72351 4.78084 4.80301 4.85748 4.90019 5.03208 5.06245 5.09660 5.13777 5.27214 5.36673 5.48096 5.52227 5.61662 5.63621 5.70572 5.81049 5.81923 5.84133 6.11194 6.14954 6.21362 6.31120 6.40070 6.46010 6.59578 7.13858 7.18125 7.45820 7.92495 8.28208 9.02249 9.54375 10.39654 11.25767 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.031704 B = 0.003191 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.953478 B = 8773.425243 C = 9260.078580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.075 3.925 4 H 0.087 0.913 5 O -0.355 6.355 6 C 0.029 3.971 7 C 0.488 3.512 8 O -0.519 6.519 9 N -0.717 5.717 10 C 0.111 3.889 11 H 0.106 0.894 12 C 0.040 3.960 13 O -0.333 6.333 14 C 0.070 3.930 15 C 0.117 3.883 16 N -0.620 5.620 17 C -0.299 4.299 18 H 0.083 0.917 19 C -0.025 4.025 20 N -0.935 5.935 21 Si 1.068 2.932 22 H -0.295 1.295 23 H -0.290 1.290 24 H -0.288 1.288 25 C 0.091 3.909 26 C -0.143 4.143 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.401 0.599 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.260 0.740 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.085 0.915 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.079 4.405 -5.504 29.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C 0.013 3.987 4 H 0.105 0.895 5 O -0.272 6.272 6 C -0.068 4.068 7 C 0.273 3.727 8 O -0.393 6.393 9 N -0.372 5.372 10 C 0.006 3.994 11 H 0.124 0.876 12 C -0.038 4.038 13 O -0.250 6.250 14 C 0.029 3.971 15 C -0.009 4.009 16 N -0.348 5.348 17 C -0.425 4.425 18 H 0.101 0.899 19 C -0.223 4.223 20 N -0.578 5.578 21 Si 0.901 3.099 22 H -0.222 1.222 23 H -0.218 1.218 24 H -0.215 1.215 25 C -0.035 4.035 26 C -0.182 4.182 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.236 0.764 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.103 0.897 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -27.326 5.729 -6.949 28.772 hybrid contribution -1.175 -1.237 1.325 2.160 sum -28.501 4.492 -5.624 29.396 Atomic orbital electron populations 1.21727 0.94279 1.02254 1.02423 1.21605 0.97428 0.92704 1.03803 1.22127 0.90442 0.96632 0.89468 0.89525 1.87998 1.87975 1.20993 1.30265 1.22875 0.99816 0.81250 1.02848 1.21503 0.91376 0.77555 0.82284 1.90749 1.64997 1.45156 1.38383 1.45950 1.07094 1.65316 1.18816 1.22760 0.79851 1.00152 0.96658 0.87580 1.23807 0.86456 0.95776 0.97757 1.88494 1.33340 1.74564 1.28607 1.23163 0.92823 0.95031 0.86110 1.22630 0.86559 0.98096 0.93649 1.45815 1.00585 1.18251 1.70144 1.20130 0.80165 0.99197 1.43048 0.89921 1.25703 0.91783 1.03913 1.00941 1.70915 1.21533 1.24915 1.40426 0.83750 0.74264 0.75799 0.76109 1.22212 1.21810 1.21544 1.23146 0.91833 0.92034 0.96445 1.23160 0.97412 1.02607 0.95030 0.92076 0.92706 0.91707 0.90184 0.90024 0.93928 0.93594 0.89140 0.76382 0.89370 0.92104 0.93030 0.93382 0.92991 0.92602 0.92118 0.89670 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.81 37.16 0.36 -0.40 16 2 C -0.12 -0.73 5.61 -26.73 -0.15 -0.88 16 3 C 0.08 0.59 2.51 -27.89 -0.07 0.52 16 4 H 0.09 0.46 7.79 -51.93 -0.40 0.06 16 5 O -0.36 -3.56 9.42 -55.09 -0.52 -4.08 16 6 C 0.03 0.21 10.81 101.05 1.09 1.31 16 7 C 0.49 5.32 7.13 -10.98 -0.08 5.24 16 8 O -0.52 -8.12 16.26 -14.30 -0.23 -8.35 16 9 N -0.72 -6.45 5.14 -51.50 -0.26 -6.71 16 10 C 0.11 1.35 3.37 -65.54 -0.22 1.13 16 11 H 0.11 1.48 7.74 -51.93 -0.40 1.08 16 12 C 0.04 0.58 7.49 38.22 0.29 0.86 16 13 O -0.33 -6.41 11.18 -35.23 -0.39 -6.80 16 14 C 0.07 1.25 1.75 -90.44 -0.16 1.09 16 15 C 0.12 2.34 8.20 -8.07 -0.07 2.27 16 16 N -0.62 -15.88 3.70 -184.59 -0.68 -16.56 16 17 C -0.30 -8.98 11.08 -15.06 -0.17 -9.14 16 18 H 0.08 2.60 8.06 -52.49 -0.42 2.17 16 19 C -0.03 -0.77 5.50 -17.43 -0.10 -0.87 16 20 N -0.94 -30.38 13.70 55.49 0.76 -29.62 16 21 Si 1.07 27.83 25.16 -169.99 -4.28 23.55 16 22 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 23 H -0.29 -7.36 6.51 56.52 0.37 -6.99 16 24 H -0.29 -6.85 6.19 56.52 0.35 -6.50 16 25 C 0.09 1.98 5.18 -7.91 -0.04 1.94 16 26 C -0.14 -1.72 6.03 -25.07 -0.15 -1.87 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.39 7.82 -51.93 -0.41 -0.01 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.36 7.77 -51.93 -0.40 -0.04 16 32 H 0.04 0.22 8.09 -51.93 -0.42 -0.20 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.40 2.26 8.21 -40.82 -0.34 1.92 16 36 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 40 H 0.26 8.32 8.73 -40.82 -0.36 7.96 16 41 H 0.06 1.12 7.44 -51.93 -0.39 0.74 16 42 H 0.06 1.42 4.75 -51.93 -0.25 1.18 16 43 H 0.08 0.79 7.96 -51.93 -0.41 0.38 16 44 H 0.09 1.01 7.81 -51.93 -0.41 0.60 16 LS Contribution 354.28 15.07 5.34 5.34 Total: -1.00 -37.77 354.28 -7.01 -44.78 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -7.29 Total: -2.76 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 0.54 Total: 1.22 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.19 Total: -52.90 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -1.15 Total: -19.23 kcal Atomic # 14 Polarization: 27.83 SS G_CDS: -4.28 Total: 23.55 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.77 -7.01 -44.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673550531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.229 kcal (2) G-P(sol) polarization free energy of solvation -37.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds