Wall clock time and date at job start Tue Mar 31 2020 05:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 5 5 O 1.21283 * 120.00472 * 240.00297 * 4 2 1 6 6 N 1.34777 * 119.99538 * 59.99635 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 O 1.42900 * 112.94327 * 53.41031 * 8 7 6 10 10 C 1.53940 * 113.73891 * 281.67473 * 8 7 6 11 11 N 1.47582 * 86.11647 * 222.04604 * 10 8 7 12 12 C 1.36934 * 134.49271 * 204.64462 * 11 10 8 13 13 H 1.08002 * 120.00420 * 180.02562 * 12 11 10 14 14 C 1.38817 * 120.00030 * 359.97438 * 12 11 10 15 15 N 1.31612 * 120.00011 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99872 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46871 * 60.00373 * 16 14 12 18 18 H 1.48498 * 109.46841 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47355 * 300.00359 * 16 14 12 20 20 C 1.47584 * 91.01485 * 24.64133 * 11 10 8 21 21 C 1.52999 * 109.47028 * 119.99588 * 2 1 3 22 22 H 1.09000 * 110.33096 * 60.70342 * 21 2 1 23 23 C 1.54485 * 110.37491 * 298.45116 * 21 2 1 24 24 C 1.54510 * 104.06324 * 217.19131 * 23 21 2 25 25 C 1.54480 * 104.06392 * 359.97438 * 24 23 21 26 26 O 1.44433 * 110.37199 * 182.95514 * 21 2 1 27 27 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 29 29 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 30 30 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 31 31 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 32 32 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 33 33 H 0.96700 * 113.99708 * 309.66512 * 9 8 7 34 34 H 1.08999 * 113.77405 * 336.34804 * 10 8 7 35 35 H 1.09003 * 113.76641 * 107.74722 * 10 8 7 36 36 H 0.97002 * 120.00093 * 179.97438 * 15 14 12 37 37 H 1.08997 * 113.76898 * 221.05693 * 20 11 10 38 38 H 1.09000 * 113.86880 * 89.66993 * 20 11 10 39 39 H 1.09000 * 110.50525 * 335.83320 * 23 21 2 40 40 H 1.08996 * 110.50671 * 98.40945 * 23 21 2 41 41 H 1.09001 * 110.51317 * 118.64109 * 24 23 21 42 42 H 1.08998 * 110.50885 * 241.35371 * 24 23 21 43 43 H 1.09000 * 110.37318 * 142.81348 * 25 24 23 44 44 H 1.08999 * 110.37565 * 265.03401 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.2000 -0.9372 -3.6506 8 6 1.6946 -0.2128 -4.8999 9 8 2.0013 1.1829 -4.8969 10 6 0.2284 -0.5270 -5.2479 11 7 0.6819 -0.6003 -6.6504 12 6 0.0731 -0.4347 -7.8657 13 1 0.6443 -0.5460 -8.7755 14 6 -1.2786 -0.1247 -7.9285 15 7 -1.9749 0.0104 -6.8198 16 14 -2.1092 0.1005 -9.5864 17 1 -1.9918 -1.1535 -10.3732 18 1 -3.5439 0.4243 -9.3813 19 1 -1.4521 1.2101 -10.3227 20 6 2.0551 -0.9237 -6.2170 21 6 2.0399 -0.7212 1.2493 22 1 1.6946 -1.7550 1.2573 23 6 1.5687 0.0131 2.5242 24 6 2.7650 -0.1130 3.4939 25 6 3.8172 -0.9091 2.6905 26 8 3.4824 -0.6724 1.3044 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.1493 0.5388 -2.5436 31 1 3.2901 -0.9367 -3.6464 32 1 1.8372 -1.9650 -3.6549 33 1 1.7495 1.6391 -4.0823 34 1 -0.1235 -1.4787 -4.8497 35 1 -0.4565 0.2976 -5.0502 36 1 -2.9193 0.2274 -6.8636 37 1 2.8286 -0.4158 -6.7930 38 1 2.2417 -1.9915 -6.1030 39 1 1.3620 1.0610 2.3069 40 1 0.6851 -0.4715 2.9394 41 1 3.1497 0.8726 3.7561 42 1 2.4741 -0.6613 4.3899 43 1 4.8195 -0.5395 2.9072 44 1 3.7473 -1.9719 2.9222 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754774591.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:14 Heat of formation + Delta-G solvation = -104.452992 kcal Electronic energy + Delta-G solvation = -24861.202254 eV Core-core repulsion = 21200.323430 eV Total energy + Delta-G solvation = -3660.878823 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.41805 -40.54269 -39.56872 -36.49100 -35.36285 -34.85662 -33.98993 -32.76386 -30.30757 -28.86749 -27.68743 -26.75640 -25.50409 -23.90964 -23.07481 -21.83700 -21.12604 -20.81342 -19.06261 -18.54902 -17.62966 -17.29218 -17.01308 -16.70466 -16.58403 -16.14230 -16.02224 -15.71470 -15.39189 -14.84304 -14.67820 -14.53550 -14.31301 -14.03322 -13.86681 -13.46299 -13.24509 -12.99192 -12.86148 -12.80671 -12.57592 -12.54141 -12.47223 -12.26366 -12.01369 -11.98448 -11.76464 -11.42811 -11.41114 -10.96511 -10.72892 -10.69561 -10.65736 -10.10839 -8.94018 -7.91156 -5.23947 1.45323 1.48951 1.54711 1.68452 2.11597 2.46579 2.95820 3.05123 3.27873 3.34740 3.55048 3.61967 3.70982 3.90275 3.92462 4.02604 4.14958 4.18208 4.36929 4.40258 4.48708 4.58610 4.67783 4.74994 4.77459 4.81662 4.87111 4.89148 4.94582 4.99485 5.03677 5.16177 5.17410 5.24416 5.29423 5.31265 5.36932 5.48978 5.91898 5.99390 6.50221 6.82673 6.91416 7.26153 7.58680 8.52398 9.25300 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.034180 B = 0.002923 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.004175 B = 9576.984543 C =10054.594335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.123 0.877 4 C 0.514 3.486 5 O -0.573 6.573 6 N -0.718 5.718 7 C 0.119 3.881 8 C 0.099 3.901 9 O -0.540 6.540 10 C 0.146 3.854 11 N -0.635 5.635 12 C -0.237 4.237 13 H 0.081 0.919 14 C -0.065 4.065 15 N -0.950 5.950 16 Si 0.980 3.020 17 H -0.278 1.278 18 H -0.291 1.291 19 H -0.278 1.278 20 C 0.128 3.872 21 C 0.089 3.911 22 H 0.054 0.946 23 C -0.144 4.144 24 C -0.149 4.149 25 C 0.032 3.968 26 O -0.393 6.393 27 H 0.054 0.946 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.409 0.591 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.383 0.617 34 H 0.026 0.974 35 H 0.052 0.948 36 H 0.249 0.751 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.152 2.638 22.583 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.141 0.859 4 C 0.302 3.698 5 O -0.452 6.452 6 N -0.371 5.371 7 C -0.006 4.006 8 C 0.056 3.944 9 O -0.346 6.346 10 C 0.020 3.980 11 N -0.362 5.362 12 C -0.366 4.366 13 H 0.099 0.901 14 C -0.258 4.258 15 N -0.599 5.599 16 Si 0.808 3.192 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.204 1.204 20 C 0.002 3.998 21 C 0.030 3.970 22 H 0.072 0.928 23 C -0.182 4.182 24 C -0.187 4.187 25 C -0.045 4.045 26 O -0.313 6.313 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.246 0.754 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.232 0.768 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.770 1.897 21.647 22.761 hybrid contribution -1.056 0.118 -0.536 1.190 sum 5.714 2.015 21.111 21.964 Atomic orbital electron populations 1.21814 0.89911 1.03248 1.04983 1.21471 0.98918 1.01398 0.90160 0.85923 1.21153 0.79211 0.84242 0.85205 1.90697 1.39137 1.28154 1.87199 1.45846 1.53668 1.32569 1.05055 1.21665 0.99427 0.96454 0.83081 1.23118 0.95619 0.82260 0.93357 1.86569 1.84723 1.19709 1.43642 1.22820 0.93608 0.98020 0.83535 1.46035 1.06548 1.81556 1.02023 1.19339 0.92674 1.40359 0.84185 0.90149 1.25602 0.96797 1.02558 1.00851 1.69959 1.07427 1.55453 1.27041 0.85132 0.77027 0.78111 0.78917 1.20430 1.21690 1.20408 1.22791 0.88467 0.97509 0.91015 1.22833 0.81284 0.98334 0.94500 0.92756 1.23033 0.99222 1.02410 0.93494 1.22940 0.94974 1.01828 0.98961 1.23600 1.00347 0.99543 0.80990 1.89244 1.21640 1.93038 1.27330 0.92712 0.88350 0.90621 0.75380 0.90908 0.91228 0.76795 0.95655 0.92944 0.94171 0.92515 0.91243 0.88919 0.88710 0.89687 0.89007 0.88544 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.88 71.98 0.64 -1.36 16 2 C -0.10 -1.85 2.40 -11.54 -0.03 -1.88 16 3 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 4 C 0.51 14.18 7.04 87.66 0.62 14.79 16 5 O -0.57 -21.02 15.45 11.72 0.18 -20.84 16 6 N -0.72 -18.37 5.23 -463.05 -2.42 -20.79 16 7 C 0.12 3.68 5.28 86.38 0.46 4.13 16 8 C 0.10 3.63 1.52 -10.13 -0.02 3.61 16 9 O -0.54 -19.24 13.51 -148.98 -2.01 -21.25 16 10 C 0.15 6.75 6.92 86.48 0.60 7.34 16 11 N -0.64 -33.31 3.70 -720.30 -2.66 -35.98 16 12 C -0.24 -13.67 10.70 84.04 0.90 -12.77 16 13 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 14 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 15 N -0.95 -56.79 11.38 21.65 0.25 -56.54 16 16 Si 0.98 46.14 29.55 68.60 2.03 48.17 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 20 C 0.13 5.31 8.34 86.48 0.72 6.03 16 21 C 0.09 1.78 2.29 31.10 0.07 1.85 16 22 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 23 C -0.14 -1.70 5.57 31.61 0.18 -1.52 16 24 C -0.15 -1.67 7.09 31.61 0.22 -1.45 16 25 C 0.03 0.55 7.63 72.49 0.55 1.10 16 26 O -0.39 -10.07 10.51 -134.22 -1.41 -11.48 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.10 0.86 7.21 -2.39 -0.02 0.84 16 29 H 0.07 1.02 7.56 -2.39 -0.02 1.00 16 30 H 0.41 8.42 6.72 -92.71 -0.62 7.80 16 31 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 32 H 0.07 2.30 8.04 -2.39 -0.02 2.28 16 33 H 0.38 9.83 7.61 -74.06 -0.56 9.26 16 34 H 0.03 1.21 8.03 -2.39 -0.02 1.19 16 35 H 0.05 2.68 7.15 -2.39 -0.02 2.66 16 36 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.07 2.63 8.10 -2.39 -0.02 2.61 16 39 H 0.09 0.85 7.73 -2.39 -0.02 0.83 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -78.36 355.49 -0.86 -79.21 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -0.18 Total: 22.89 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: 5.38 Total: 16.62 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -4.84 Total: -113.31 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -3.24 Total: -53.57 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -78.36 -0.86 -79.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754774591.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.242 kcal (2) G-P(sol) polarization free energy of solvation -78.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds