Wall clock time and date at job start Tue Mar 31 2020 05:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46816 * 2 1 4 4 O 1.42902 * 109.46837 * 179.97438 * 3 2 1 5 5 C 1.42912 * 114.00018 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47033 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00223 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99926 * 180.02562 * 6 5 4 9 9 C 1.46494 * 119.99761 * 179.97438 * 8 6 5 10 10 H 1.08998 * 111.00520 * 37.71886 * 9 8 6 11 11 C 1.55009 * 111.10908 * 273.54318 * 9 8 6 12 12 O 1.43912 * 105.18346 * 206.03308 * 11 9 8 13 13 C 1.42390 * 109.55595 * 24.29214 * 12 11 9 14 14 C 1.52705 * 116.14040 * 129.84878 * 13 12 11 15 15 N 1.47218 * 87.79329 * 90.70489 * 14 13 12 16 16 C 1.36939 * 135.97234 * 206.43293 * 15 14 13 17 17 H 1.07997 * 119.99736 * 7.55209 * 16 15 14 18 18 C 1.38805 * 119.99984 * 187.55519 * 16 15 14 19 19 N 1.31621 * 120.00084 * 174.47539 * 18 16 15 20 20 Si 1.86808 * 119.99965 * 354.46939 * 18 16 15 21 21 H 1.48504 * 109.46986 * 174.94918 * 20 18 16 22 22 H 1.48489 * 109.47489 * 294.94991 * 20 18 16 23 23 H 1.48498 * 109.46982 * 54.95577 * 20 18 16 24 24 C 1.47208 * 88.05526 * 26.69108 * 15 14 13 25 25 C 1.53653 * 108.53608 * 358.09025 * 13 12 11 26 26 H 1.08996 * 109.47569 * 300.00483 * 1 2 3 27 27 H 1.09009 * 109.47166 * 59.99983 * 1 2 3 28 28 H 1.09005 * 109.47472 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47031 * 240.00060 * 2 1 3 30 30 H 1.08996 * 109.46849 * 119.99880 * 2 1 3 31 31 H 1.09008 * 109.47372 * 59.99861 * 3 2 1 32 32 H 1.08996 * 109.47313 * 299.99595 * 3 2 1 33 33 H 1.09000 * 109.46342 * 60.00077 * 5 4 3 34 34 H 1.08992 * 109.46880 * 300.00273 * 5 4 3 35 35 H 0.96997 * 119.99507 * 359.97438 * 8 6 5 36 36 H 1.09003 * 110.30456 * 87.10378 * 11 9 8 37 37 H 1.09002 * 110.38170 * 325.00366 * 11 9 8 38 38 H 1.08993 * 113.50311 * 335.97483 * 14 13 12 39 39 H 1.09000 * 113.55409 * 205.44377 * 14 13 12 40 40 H 0.96996 * 119.99869 * 354.90609 * 19 18 16 41 41 H 1.09003 * 113.50359 * 88.04129 * 24 15 14 42 42 H 1.09000 * 113.50322 * 218.58165 * 24 15 14 43 43 H 1.09000 * 110.93301 * 97.29566 * 25 13 12 44 44 H 1.09002 * 110.93584 * 220.96174 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4425 0.0006 5 6 4.0502 2.7481 0.0001 6 6 5.5524 2.6291 0.0001 7 8 6.0740 1.5341 0.0011 8 7 6.3164 3.7394 0.0002 9 6 7.7768 3.6237 0.0008 10 1 8.1029 2.7903 -0.6214 11 6 8.3256 3.4908 1.4444 12 8 9.6701 4.0007 1.3849 13 6 9.7901 4.9017 0.2889 14 6 10.4160 6.2595 0.5996 15 7 11.7233 5.6688 0.2685 16 6 13.0265 5.9033 0.6177 17 1 13.2573 6.6173 1.3944 18 6 14.0507 5.2233 -0.0268 19 7 15.3055 5.5259 0.2308 20 14 13.6483 3.8786 -1.2594 21 1 14.9019 3.3965 -1.8930 22 1 12.9810 2.7506 -0.5613 23 1 12.7421 4.4197 -2.3040 24 6 11.0165 4.7200 -0.6074 25 6 8.4440 4.9538 -0.4502 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.7281 3.2894 0.8896 34 1 3.7289 3.2884 -0.8903 35 1 5.8992 4.6151 -0.0002 36 1 8.3309 2.4452 1.7523 37 1 7.7262 4.0846 2.1346 38 1 10.3236 6.5516 1.6456 39 1 10.1089 7.0481 -0.0873 40 1 15.5145 6.2723 0.8139 41 1 10.8717 5.0904 -1.6223 42 1 11.4308 3.7122 -0.5806 43 1 7.8559 5.8132 -0.1282 44 1 8.5928 4.9682 -1.5299 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755059632.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:48 Heat of formation + Delta-G solvation = -89.752581 kcal Electronic energy + Delta-G solvation = -24132.159663 eV Core-core repulsion = 20471.918298 eV Total energy + Delta-G solvation = -3660.241366 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.79094 -40.65285 -38.81144 -38.05231 -35.73951 -34.56875 -34.54076 -32.14948 -30.41253 -28.82613 -27.26562 -27.10401 -26.44046 -23.56313 -22.66461 -22.44012 -21.77356 -20.80518 -19.61526 -18.43160 -17.99964 -17.66141 -17.43211 -17.21367 -16.56649 -16.13031 -16.05203 -15.68452 -15.60792 -15.32029 -15.05409 -14.88236 -14.56920 -14.32739 -14.01282 -13.53014 -13.33263 -13.06135 -13.02137 -12.86691 -12.70510 -12.65876 -12.37055 -12.27136 -11.81765 -11.77520 -11.75000 -11.40426 -11.28605 -11.05524 -10.91963 -10.65001 -10.35349 -10.15073 -9.23686 -8.63014 -5.47256 1.35010 1.46494 1.52559 1.65109 1.69499 2.52320 2.64874 2.99241 3.00297 3.18503 3.34959 3.47062 3.65539 3.74903 4.02238 4.05565 4.08532 4.14078 4.27931 4.33769 4.43895 4.53027 4.56984 4.59000 4.62750 4.64852 4.67002 4.73792 4.77057 4.85762 4.87972 4.91180 4.98788 5.18097 5.20845 5.24556 5.34918 5.37326 5.93560 6.11898 6.16491 6.53830 6.68819 7.21020 7.31580 8.26127 8.89220 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.041407 B = 0.002521 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.045325 B =11103.613963 C =11408.592982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.057 3.943 4 O -0.405 6.405 5 C 0.048 3.952 6 C 0.508 3.492 7 O -0.574 6.574 8 N -0.696 5.696 9 C 0.123 3.877 10 H 0.087 0.913 11 C 0.036 3.964 12 O -0.373 6.373 13 C 0.085 3.915 14 C 0.116 3.884 15 N -0.661 5.661 16 C -0.286 4.286 17 H 0.049 0.951 18 C -0.088 4.088 19 N -0.972 5.972 20 Si 1.108 2.892 21 H -0.303 1.303 22 H -0.288 1.288 23 H -0.248 1.248 24 C 0.077 3.923 25 C -0.123 4.123 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.426 0.574 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.043 0.957 39 H 0.086 0.914 40 H 0.246 0.754 41 H 0.085 0.915 42 H 0.040 0.960 43 H 0.127 0.873 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.324 -2.613 -3.602 36.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.166 4.166 3 C -0.019 4.019 4 O -0.324 6.324 5 C -0.031 4.031 6 C 0.296 3.704 7 O -0.452 6.452 8 N -0.352 5.352 9 C 0.017 3.983 10 H 0.105 0.895 11 C -0.042 4.042 12 O -0.292 6.292 13 C 0.043 3.957 14 C -0.009 4.009 15 N -0.389 5.389 16 C -0.414 4.414 17 H 0.067 0.933 18 C -0.279 4.279 19 N -0.618 5.618 20 Si 0.934 3.066 21 H -0.231 1.231 22 H -0.215 1.215 23 H -0.173 1.173 24 C -0.047 4.047 25 C -0.162 4.162 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.265 0.735 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.055 0.945 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.145 0.855 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -34.799 -4.685 -4.349 35.382 hybrid contribution 0.046 1.779 1.517 2.338 sum -34.753 -2.906 -2.832 34.990 Atomic orbital electron populations 1.21667 0.92957 1.02776 1.02780 1.21495 0.97064 0.95609 1.02458 1.22806 0.78779 0.98413 1.01867 1.87978 1.21583 1.27057 1.95830 1.22341 0.88336 0.86678 1.05767 1.21073 0.90388 0.83932 0.75033 1.90757 1.75794 1.28795 1.49882 1.45487 1.04768 1.09720 1.75189 1.22414 0.80678 0.99390 0.95836 0.89516 1.23983 0.82812 0.99559 0.97845 1.88456 1.30235 1.61337 1.49124 1.22886 0.94411 0.90980 0.87382 1.22937 0.83349 0.94875 0.99751 1.45960 1.01747 1.38177 1.53038 1.19989 0.81740 1.23061 1.16574 0.93333 1.27026 0.91929 1.05480 1.03471 1.71013 1.18327 1.31311 1.41134 0.83278 0.74284 0.73915 0.75085 1.23065 1.21518 1.17278 1.23485 0.91315 0.94279 0.95666 1.23116 0.92838 0.97429 1.02789 0.91703 0.91636 0.91816 0.92232 0.92328 0.91465 0.91331 0.86929 0.86741 0.73527 0.90808 0.89764 0.93878 0.89608 0.94547 0.89757 0.94194 0.85523 0.86752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.91 71.98 0.71 -0.30 16 2 C -0.13 -1.53 6.30 30.59 0.19 -1.34 16 3 C 0.06 0.61 5.94 71.98 0.43 1.04 16 4 O -0.41 -7.51 9.88 -129.94 -1.28 -8.79 16 5 C 0.05 0.53 6.42 71.23 0.46 0.98 16 6 C 0.51 9.79 7.91 87.65 0.69 10.48 16 7 O -0.57 -18.25 16.25 16.00 0.26 -17.99 16 8 N -0.70 -9.43 5.24 -435.25 -2.28 -11.71 16 9 C 0.12 2.59 3.37 46.54 0.16 2.75 16 10 H 0.09 2.26 7.74 -2.39 -0.02 2.25 16 11 C 0.04 0.95 7.49 72.67 0.54 1.49 16 12 O -0.37 -13.89 11.18 -148.98 -1.67 -15.56 16 13 C 0.08 2.77 1.75 -10.68 -0.02 2.75 16 14 C 0.12 4.31 8.20 83.39 0.68 5.00 16 15 N -0.66 -33.35 3.70 -738.94 -2.73 -36.08 16 16 C -0.29 -17.59 11.08 84.03 0.93 -16.66 16 17 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 18 C -0.09 -5.54 5.50 84.86 0.47 -5.07 16 19 N -0.97 -65.63 13.70 21.65 0.30 -65.33 16 20 Si 1.11 56.80 25.17 68.60 1.73 58.53 16 21 H -0.30 -15.72 7.11 99.48 0.71 -15.01 16 22 H -0.29 -14.41 6.49 99.48 0.65 -13.77 16 23 H -0.25 -10.95 6.18 99.48 0.62 -10.34 16 24 C 0.08 3.18 5.17 83.48 0.43 3.61 16 25 C -0.12 -2.30 6.03 31.67 0.19 -2.11 16 26 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.06 0.35 8.14 -2.38 -0.02 0.33 16 28 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.43 1.91 8.51 -92.71 -0.79 1.12 16 36 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.09 2.61 8.13 -2.39 -0.02 2.59 16 40 H 0.25 16.59 8.73 -92.71 -0.81 15.78 16 41 H 0.09 3.01 7.42 -2.39 -0.02 3.00 16 42 H 0.04 1.82 4.78 -2.39 -0.01 1.81 16 43 H 0.13 1.41 7.96 -2.39 -0.02 1.40 16 44 H 0.11 1.78 7.81 -2.39 -0.02 1.76 16 Total: -1.00 -90.52 356.81 0.20 -90.32 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 0.01 Total: 3.98 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 5.87 Total: 2.63 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -4.72 Total: -113.12 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -2.69 Total: -42.34 kcal Atomic # 14 Polarization: 56.80 SS G_CDS: 1.73 Total: 58.53 kcal Total: -90.52 0.20 -90.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755059632.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.570 kcal (2) G-P(sol) polarization free energy of solvation -90.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds