Wall clock time and date at job start Tue Mar 31 2020 03:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99575 * 2 1 4 4 C 1.53001 * 109.47385 * 124.99817 * 3 2 1 5 5 O 1.42893 * 109.47349 * 179.97438 * 4 3 2 6 6 C 1.42904 * 114.00393 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47390 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00177 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99529 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99363 * 175.54130 * 9 7 6 11 11 C 1.53002 * 112.94721 * 302.72300 * 10 9 7 12 12 C 1.53009 * 109.47004 * 304.01068 * 11 10 9 13 13 O 1.42893 * 109.46936 * 175.20713 * 12 11 10 14 14 C 1.53942 * 113.73933 * 171.13097 * 10 9 7 15 15 N 1.47806 * 86.03785 * 222.08126 * 14 10 9 16 16 C 1.36941 * 134.46157 * 204.64042 * 15 14 10 17 17 H 1.07999 * 120.00653 * 179.86607 * 16 15 14 18 18 C 1.38818 * 119.99587 * 359.87094 * 16 15 14 19 19 N 1.31619 * 120.00142 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99835 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47083 * 90.00113 * 20 18 16 22 22 H 1.48498 * 109.46854 * 210.00257 * 20 18 16 23 23 H 1.48501 * 109.47214 * 329.99920 * 20 18 16 24 24 C 1.47580 * 91.05068 * 24.55050 * 15 14 10 25 25 H 1.07995 * 120.00469 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99607 * 179.97438 * 1 2 3 27 27 H 1.08004 * 120.00268 * 179.97438 * 2 1 3 28 28 H 1.08992 * 109.47673 * 4.99226 * 3 2 1 29 29 H 1.09006 * 109.47044 * 244.99451 * 3 2 1 30 30 H 1.09006 * 109.47308 * 59.99238 * 4 3 2 31 31 H 1.09000 * 109.47145 * 299.99809 * 4 3 2 32 32 H 1.09007 * 109.46678 * 59.99879 * 6 5 4 33 33 H 1.08999 * 109.46574 * 300.00381 * 6 5 4 34 34 H 0.96993 * 120.00399 * 355.26558 * 9 7 6 35 35 H 1.09003 * 109.47150 * 64.00410 * 11 10 9 36 36 H 1.08993 * 109.47080 * 184.01159 * 11 10 9 37 37 H 1.09001 * 109.46577 * 295.21147 * 12 11 10 38 38 H 1.08996 * 109.46985 * 55.20468 * 12 11 10 39 39 H 0.96706 * 113.99842 * 179.97438 * 13 12 11 40 40 H 1.09000 * 113.76904 * 336.35101 * 14 10 9 41 41 H 1.09004 * 113.76910 * 107.74428 * 14 10 9 42 42 H 0.97004 * 120.00167 * 180.02562 * 19 18 16 43 43 H 1.09003 * 113.77015 * 221.14958 * 24 15 14 44 44 H 1.09001 * 113.87220 * 89.76691 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3333 1.1816 5 8 3.7497 2.5706 1.1813 6 6 4.6884 2.6999 2.2510 7 6 5.3804 4.0351 2.1534 8 8 5.0979 4.8004 1.2560 9 7 6.3139 4.3782 3.0630 10 6 7.0561 5.6325 2.9134 11 6 7.7982 5.7309 1.5790 12 6 8.7284 4.5262 1.4227 13 8 9.3373 4.5591 0.1304 14 6 7.9249 5.9878 4.1335 15 7 7.4433 7.3724 3.9443 16 6 7.9286 8.6100 4.2728 17 1 7.3688 9.4962 4.0126 18 6 9.1403 8.7256 4.9402 19 7 9.8229 7.6457 5.2569 20 14 9.8028 10.4139 5.3877 21 1 9.3081 10.7989 6.7340 22 1 11.2872 10.3764 5.3979 23 1 9.3396 11.4086 4.3870 24 6 6.2310 6.8857 3.2576 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3585 2.1316 0.0894 29 1 2.6213 1.4026 -0.9314 30 1 3.7399 0.5067 1.0922 31 1 2.4771 1.2358 2.1130 32 1 5.4275 1.9015 2.1843 33 1 4.1645 2.6314 3.2043 34 1 6.4916 3.7968 3.8188 35 1 7.0768 5.7412 0.7619 36 1 8.3856 6.6488 1.5568 37 1 9.5018 4.5625 2.1899 38 1 8.1531 3.6066 1.5300 39 1 9.9418 3.8234 -0.0384 40 1 7.5871 5.5281 5.0622 41 1 8.9944 5.8662 3.9616 42 1 10.6695 7.7265 5.7236 43 1 5.9505 7.4797 2.3877 44 1 5.3933 6.6901 3.9270 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755344841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:32 Heat of formation + Delta-G solvation = -83.114113 kcal Electronic energy + Delta-G solvation = -24444.653004 eV Core-core repulsion = 20784.699504 eV Total energy + Delta-G solvation = -3659.953500 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.49732 -39.70916 -38.48401 -37.71097 -35.84800 -35.25672 -33.82490 -32.02618 -30.69211 -29.18345 -28.12723 -26.85174 -24.98098 -23.90007 -23.34995 -21.79843 -20.65010 -20.21830 -18.79147 -18.48594 -18.20386 -17.57004 -17.41509 -16.87742 -16.63892 -16.22319 -16.07284 -15.76886 -15.44531 -15.29854 -15.03556 -14.44246 -14.20903 -14.12017 -13.75172 -13.34821 -13.33552 -13.19810 -12.88923 -12.79585 -12.58856 -12.46982 -12.25626 -12.11010 -12.04577 -11.95608 -11.74609 -11.44381 -10.99477 -10.87921 -10.63202 -10.55017 -10.24245 -10.03790 -8.96957 -7.93996 -5.26737 1.35578 1.45837 1.47371 1.56002 1.66744 1.86143 2.46561 3.01556 3.14629 3.25782 3.39659 3.63024 3.82867 4.03636 4.11980 4.18646 4.23411 4.27391 4.31776 4.34570 4.38311 4.47527 4.48965 4.53255 4.70751 4.71410 4.83620 4.93423 5.02233 5.05885 5.12358 5.13753 5.17999 5.22175 5.47267 5.70292 5.74693 5.88015 5.89038 6.15189 6.67991 6.90068 6.91396 7.35451 7.55829 8.49073 9.22916 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.026141 B = 0.002878 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.869175 B = 9725.472323 C =10317.761523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.158 4.158 3 C -0.096 4.096 4 C 0.063 3.937 5 O -0.400 6.400 6 C 0.051 3.949 7 C 0.507 3.493 8 O -0.564 6.564 9 N -0.702 5.702 10 C 0.158 3.842 11 C -0.092 4.092 12 C 0.093 3.907 13 O -0.593 6.593 14 C 0.173 3.827 15 N -0.633 5.633 16 C -0.237 4.237 17 H 0.078 0.922 18 C -0.058 4.058 19 N -0.946 5.946 20 Si 0.978 3.022 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.274 1.274 24 C 0.119 3.881 25 H 0.094 0.906 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.418 0.582 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.397 0.603 40 H 0.040 0.960 41 H 0.060 0.940 42 H 0.252 0.748 43 H 0.035 0.965 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.939 -20.515 -5.277 23.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.176 4.176 3 C -0.133 4.133 4 C -0.013 4.013 5 O -0.319 6.319 6 C -0.029 4.029 7 C 0.294 3.706 8 O -0.442 6.442 9 N -0.357 5.357 10 C 0.070 3.930 11 C -0.131 4.131 12 C 0.016 3.984 13 O -0.402 6.402 14 C 0.048 3.952 15 N -0.360 5.360 16 C -0.365 4.365 17 H 0.096 0.904 18 C -0.252 4.252 19 N -0.594 5.594 20 Si 0.806 3.194 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.199 1.199 24 C -0.007 4.007 25 H 0.112 0.888 26 H 0.132 0.868 27 H 0.144 0.856 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.256 0.744 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.246 0.754 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.308 -19.075 -5.998 22.972 hybrid contribution 0.826 0.396 0.990 1.349 sum -10.482 -18.678 -5.008 21.996 Atomic orbital electron populations 1.24080 0.95970 1.02675 0.99940 1.22833 0.96133 0.97699 1.00918 1.20645 0.97842 0.96428 0.98376 1.22648 0.94262 0.85357 0.99013 1.87968 1.55152 1.39337 1.49469 1.22310 0.93770 0.94063 0.92723 1.21017 0.79290 0.88988 0.81275 1.90707 1.63896 1.53776 1.35794 1.45821 1.38668 1.23040 1.28190 1.22186 0.92338 0.82853 0.95616 1.21201 0.97630 0.98557 0.95684 1.21947 0.94983 0.97225 0.84267 1.86445 1.64855 1.54032 1.34819 1.22479 0.97505 0.83109 0.92116 1.45985 1.20400 1.01851 1.67723 1.19295 1.02577 0.83487 1.31148 0.90437 1.25546 0.97648 1.00976 1.01032 1.69927 1.15638 1.28057 1.45816 0.85095 0.77043 0.79229 0.78041 1.21084 1.21652 1.19927 1.22965 0.90539 0.92812 0.94383 0.88787 0.86798 0.85613 0.91836 0.90884 0.91063 0.91758 0.86929 0.87373 0.74417 0.91786 0.93100 0.93329 0.92061 0.75377 0.94253 0.92222 0.93925 0.94622 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 14.32 67.78 0.97 -1.20 16 2 C -0.16 -1.92 9.52 25.64 0.24 -1.68 16 3 C -0.10 -1.55 6.03 29.85 0.18 -1.37 16 4 C 0.06 0.99 5.92 71.98 0.43 1.41 16 5 O -0.40 -9.67 9.88 -129.94 -1.28 -10.95 16 6 C 0.05 0.95 6.42 71.23 0.46 1.41 16 7 C 0.51 14.76 7.51 87.66 0.66 15.42 16 8 O -0.56 -22.61 14.68 16.01 0.24 -22.38 16 9 N -0.70 -19.36 4.52 -427.57 -1.93 -21.29 16 10 C 0.16 5.98 0.68 5.36 0.00 5.98 16 11 C -0.09 -3.69 4.68 30.60 0.14 -3.55 16 12 C 0.09 3.00 6.86 71.99 0.49 3.49 16 13 O -0.59 -18.70 13.66 -148.98 -2.03 -20.73 16 14 C 0.17 7.74 6.69 86.44 0.58 8.32 16 15 N -0.63 -32.95 3.55 -715.54 -2.54 -35.49 16 16 C -0.24 -13.54 10.70 84.03 0.90 -12.64 16 17 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 18 C -0.06 -3.30 5.50 84.86 0.47 -2.84 16 19 N -0.95 -55.17 11.39 21.65 0.25 -54.92 16 20 Si 0.98 45.86 29.55 68.60 2.03 47.89 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 23 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 24 C 0.12 5.33 8.02 86.49 0.69 6.02 16 25 H 0.09 1.13 7.84 -2.91 -0.02 1.11 16 26 H 0.11 0.94 8.06 -2.91 -0.02 0.91 16 27 H 0.13 1.12 8.06 -2.91 -0.02 1.10 16 28 H 0.06 1.17 7.79 -2.39 -0.02 1.15 16 29 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.42 8.23 8.67 -92.71 -0.80 7.43 16 35 H 0.06 2.78 6.55 -2.39 -0.02 2.77 16 36 H 0.05 2.41 8.02 -2.39 -0.02 2.39 16 37 H 0.05 1.57 7.60 -2.39 -0.02 1.55 16 38 H 0.06 1.64 7.46 -2.39 -0.02 1.63 16 39 H 0.40 7.74 9.12 -74.05 -0.68 7.06 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.06 2.95 6.58 -2.38 -0.02 2.93 16 42 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 43 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 44 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -77.85 368.37 0.45 -77.40 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -0.48 Total: 21.71 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 6.21 Total: 18.77 kcal Atomic # 7 Polarization: -107.48 SS G_CDS: -4.22 Total: -111.70 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -3.08 Total: -54.06 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -77.85 0.45 -77.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755344841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.712 kcal (2) G-P(sol) polarization free energy of solvation -77.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds