Wall clock time and date at job start Tue Mar 31 2020 03:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46906 * 109.47284 * 2 1 4 4 C 1.46896 * 111.00217 * 76.15720 * 3 2 1 5 5 C 1.50693 * 109.47566 * 195.78375 * 4 3 2 6 6 H 1.08005 * 119.99647 * 355.81881 * 5 4 3 7 7 C 1.37873 * 120.00280 * 175.81042 * 5 4 3 8 8 N 1.31522 * 120.00072 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99933 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47252 * 90.00344 * 9 7 5 11 11 H 1.48506 * 109.47002 * 209.99902 * 9 7 5 12 12 H 1.48493 * 109.47210 * 329.99608 * 9 7 5 13 13 C 1.46899 * 111.00164 * 200.11733 * 3 2 1 14 14 C 1.50697 * 109.47321 * 66.03980 * 13 3 2 15 15 O 1.21277 * 120.00265 * 0.02562 * 14 13 3 16 16 N 1.34777 * 119.99821 * 179.97438 * 14 13 3 17 17 C 1.46930 * 120.63201 * 359.72727 * 16 14 13 18 18 C 1.52759 * 109.00444 * 233.57761 * 17 16 14 19 19 C 1.53032 * 109.38920 * 305.58892 * 18 17 16 20 20 C 1.50696 * 109.45150 * 181.25526 * 19 18 17 21 21 O 1.20830 * 120.00135 * 239.93654 * 20 19 18 22 22 O 1.34226 * 120.00204 * 59.93471 * 20 19 18 23 23 C 1.53046 * 109.53680 * 61.24133 * 19 18 17 24 24 C 1.46926 * 120.62975 * 180.02562 * 16 14 13 25 25 H 1.08994 * 109.47192 * 302.20892 * 1 2 3 26 26 H 1.09001 * 109.46380 * 62.20311 * 1 2 3 27 27 H 1.08996 * 109.46901 * 182.20518 * 1 2 3 28 28 H 1.08993 * 109.47396 * 239.99863 * 2 1 3 29 29 H 1.09006 * 109.47173 * 119.99330 * 2 1 3 30 30 H 1.09003 * 109.47264 * 315.78982 * 4 3 2 31 31 H 1.09011 * 109.47028 * 75.78641 * 4 3 2 32 32 H 0.97002 * 120.00009 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.47252 * 186.04972 * 13 3 2 34 34 H 1.09000 * 109.46937 * 306.04324 * 13 3 2 35 35 H 1.08991 * 109.58478 * 353.41396 * 17 16 14 36 36 H 1.09001 * 109.58558 * 113.84094 * 17 16 14 37 37 H 1.09003 * 109.56511 * 185.54919 * 18 17 16 38 38 H 1.09001 * 109.35941 * 65.50419 * 18 17 16 39 39 H 1.08998 * 109.46247 * 301.22104 * 19 18 17 40 40 H 0.96698 * 117.00194 * 179.97438 * 22 20 19 41 41 H 1.09004 * 109.49664 * 178.68900 * 23 19 18 42 42 H 1.08998 * 109.52512 * 58.60361 * 23 19 18 43 43 H 1.09007 * 109.58674 * 246.16188 * 24 16 14 44 44 H 1.09003 * 109.58735 * 6.44081 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8859 1.9908 1.3315 5 6 2.0224 3.4873 1.2187 6 1 2.2586 3.9376 0.2659 7 6 1.8454 4.2815 2.3317 8 7 1.9641 5.5877 2.2331 9 14 1.4373 3.5025 3.9797 10 1 2.6949 3.1940 4.7065 11 1 0.6194 4.4457 4.7841 12 1 0.6728 2.2488 3.7588 13 6 3.4093 1.4521 -0.4717 14 6 3.4670 1.0514 -1.9232 15 8 2.4506 0.7409 -2.5075 16 7 4.6481 1.0389 -2.5724 17 6 5.8869 1.4193 -1.8801 18 6 6.5890 2.5137 -2.6819 19 6 6.7941 2.0366 -4.1214 20 6 7.5141 3.1031 -4.9057 21 8 6.9937 3.5910 -5.8810 22 8 8.7337 3.5111 -4.5210 23 6 5.4346 1.7591 -4.7672 24 6 4.7203 0.6511 -3.9877 25 1 -0.3633 0.5477 0.8695 26 1 -0.3632 0.4793 -0.9091 27 1 -0.3633 -1.0269 0.0395 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 0.9080 1.7453 1.7458 31 1 2.6659 1.6032 1.9871 32 1 1.8399 6.1464 3.0163 33 1 3.7819 2.4703 -0.3607 34 1 4.0261 0.7734 0.1174 35 1 5.6490 1.7932 -0.8844 36 1 6.5419 0.5517 -1.8000 37 1 7.5563 2.7336 -2.2302 38 1 5.9737 3.4134 -2.6810 39 1 7.3887 1.1231 -4.1200 40 1 9.1561 4.1971 -5.0558 41 1 5.5804 1.4416 -5.7998 42 1 4.8299 2.6657 -4.7472 43 1 5.2780 -0.2806 -4.0833 44 1 3.7128 0.5159 -4.3814 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054262882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:41 Heat of formation + Delta-G solvation = -119.982001 kcal Electronic energy + Delta-G solvation = -25089.345594 eV Core-core repulsion = 21427.793383 eV Total energy + Delta-G solvation = -3661.552212 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.87754 -39.82775 -37.62614 -36.40918 -36.15362 -33.20722 -32.55295 -31.55680 -30.36708 -28.51706 -26.77056 -25.27403 -23.34428 -22.63647 -22.27021 -20.79550 -19.93119 -18.80688 -18.30181 -17.31312 -16.86598 -16.59223 -15.88812 -15.82272 -15.38663 -14.66772 -14.48856 -14.20683 -14.01583 -13.85409 -13.68175 -13.53009 -13.02486 -12.79811 -12.59148 -12.41835 -12.15143 -11.87097 -11.80560 -11.71889 -11.46512 -11.28349 -11.08529 -11.03499 -10.89005 -10.72710 -10.66444 -10.60981 -10.12428 -9.82672 -9.33192 -9.16847 -8.61389 -8.58635 -7.36781 -6.06677 -4.04179 1.93935 2.72607 2.95067 3.08528 3.26209 3.35127 3.37035 4.28220 4.38582 4.40386 4.64294 4.66508 4.83809 4.95834 5.06992 5.09068 5.24060 5.26385 5.40773 5.43734 5.57739 5.61245 5.68969 5.71869 5.84169 5.84858 5.98017 6.03170 6.05885 6.14852 6.23985 6.33810 6.51501 6.61736 6.82066 6.85646 6.87471 7.45386 7.61884 7.62559 7.91251 7.99345 8.51786 8.65033 9.01727 9.54911 11.06372 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.003961 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.814521 B = 7067.088913 C = 8273.050509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.050 3.950 3 N -0.511 5.511 4 C 0.160 3.840 5 C -0.509 4.509 6 H 0.080 0.920 7 C 0.070 3.930 8 N -0.899 5.899 9 Si 0.873 3.127 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.046 3.954 14 C 0.519 3.481 15 O -0.519 6.519 16 N -0.624 5.624 17 C 0.110 3.890 18 C -0.129 4.129 19 C -0.077 4.077 20 C 0.483 3.517 21 O -0.513 6.513 22 O -0.516 6.516 23 C -0.120 4.120 24 C 0.115 3.885 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.016 0.984 30 H 0.037 0.963 31 H -0.016 1.016 32 H 0.263 0.737 33 H 0.116 0.884 34 H 0.049 0.951 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.110 0.890 40 H 0.409 0.591 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.707 -10.543 -10.296 20.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.078 4.078 3 N -0.235 5.235 4 C 0.035 3.965 5 C -0.547 4.547 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.538 5.538 9 Si 0.701 3.299 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.191 1.191 13 C -0.085 4.085 14 C 0.308 3.692 15 O -0.394 6.394 16 N -0.361 5.361 17 C -0.013 4.013 18 C -0.168 4.168 19 C -0.096 4.096 20 C 0.325 3.675 21 O -0.401 6.401 22 O -0.328 6.328 23 C -0.159 4.159 24 C -0.008 4.008 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.035 0.965 30 H 0.055 0.945 31 H 0.002 0.998 32 H 0.073 0.927 33 H 0.134 0.866 34 H 0.067 0.933 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.128 0.872 40 H 0.268 0.732 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.468 -10.450 -10.838 19.548 hybrid contribution 0.780 -0.094 1.112 1.361 sum 13.247 -10.544 -9.727 19.526 Atomic orbital electron populations 1.21661 0.95393 0.99808 1.02720 1.22100 0.96506 0.89953 0.99259 1.61653 1.16707 1.16332 1.28814 1.20286 0.96029 0.96080 0.84141 1.21035 1.47776 0.88678 0.97241 0.90238 1.24889 0.94977 0.94683 0.98661 1.69899 1.50292 1.03583 1.30068 0.86891 0.78872 0.79657 0.84505 1.20342 1.21144 1.19094 1.21928 0.92676 1.03463 0.90437 1.21051 0.82096 0.76200 0.89830 1.90641 1.33204 1.46962 1.68566 1.48229 1.07499 1.69125 1.11262 1.21635 0.85705 0.97171 0.96831 1.21896 1.02537 0.99931 0.92408 1.21069 0.96640 0.96164 0.95754 1.23553 0.79019 0.82048 0.82891 1.90737 1.66701 1.55348 1.27308 1.84534 1.32359 1.57017 1.58878 1.21866 0.93703 1.00903 0.99382 1.21486 1.02556 0.95857 0.80868 0.92752 0.91913 0.93702 0.91033 0.96533 0.94544 0.99825 0.92664 0.86626 0.93348 0.88365 0.91079 0.89053 0.90221 0.87168 0.73194 0.89917 0.90183 0.91667 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 10.05 37.16 0.37 -2.09 16 2 C 0.05 0.94 5.20 -3.82 -0.02 0.92 16 3 N -0.51 -10.95 4.12 -237.52 -0.98 -11.93 16 4 C 0.16 3.84 3.64 -4.98 -0.02 3.82 16 5 C -0.51 -14.17 9.07 -34.45 -0.31 -14.48 16 6 H 0.08 2.43 7.67 -52.48 -0.40 2.02 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.12 13.96 55.43 0.77 -26.34 16 9 Si 0.87 21.09 27.55 -169.99 -4.68 16.40 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.21 6.42 56.52 0.36 -5.85 16 13 C 0.05 0.83 3.64 -4.98 -0.02 0.82 16 14 C 0.52 8.78 7.21 -10.99 -0.08 8.71 16 15 O -0.52 -10.45 13.96 5.56 0.08 -10.37 16 16 N -0.62 -7.89 2.98 -173.05 -0.52 -8.41 16 17 C 0.11 1.05 6.31 -3.93 -0.02 1.02 16 18 C -0.13 -1.15 5.28 -26.84 -0.14 -1.29 16 19 C -0.08 -0.66 2.59 -91.73 -0.24 -0.89 16 20 C 0.48 4.75 7.63 36.00 0.27 5.02 16 21 O -0.51 -6.80 16.74 -18.75 -0.31 -7.11 16 22 O -0.52 -3.80 13.30 -39.25 -0.52 -4.32 16 23 C -0.12 -1.21 4.65 -26.63 -0.12 -1.33 16 24 C 0.12 1.24 6.43 -3.73 -0.02 1.22 16 25 H 0.05 1.02 6.73 -51.93 -0.35 0.67 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.32 5.86 -51.93 -0.30 1.01 16 29 H 0.02 0.29 7.99 -51.93 -0.42 -0.12 16 30 H 0.04 0.90 5.30 -51.93 -0.28 0.62 16 31 H -0.02 -0.37 7.69 -51.92 -0.40 -0.77 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.12 2.22 6.55 -51.93 -0.34 1.88 16 34 H 0.05 0.77 7.93 -51.93 -0.41 0.35 16 35 H 0.10 0.99 5.93 -51.93 -0.31 0.69 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.67 8.08 -51.93 -0.42 0.25 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.41 1.45 9.10 45.56 0.41 1.87 16 41 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 42 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.10 1.25 7.00 -51.93 -0.36 0.89 16 LS Contribution 349.62 15.07 5.27 5.27 Total: -1.00 -35.16 349.62 -7.47 -42.63 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.13 Total: 0.88 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -0.45 Total: 3.30 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.72 Total: -46.68 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.76 Total: -21.80 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.68 Total: 16.40 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.16 -7.47 -42.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054262882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.353 kcal (2) G-P(sol) polarization free energy of solvation -35.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds