Wall clock time and date at job start Tue Mar 31 2020 03:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45202 * 109.47040 * 2 1 4 4 C 1.34230 * 116.99941 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00167 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99985 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.52125 * 59.91831 * 6 4 3 8 8 C 1.53045 * 109.49856 * 179.97438 * 6 4 3 9 9 C 1.53040 * 109.53640 * 181.31583 * 8 6 4 10 10 C 1.53192 * 109.31511 * 298.63685 * 9 8 6 11 11 N 1.46925 * 108.89364 * 54.56465 * 10 9 8 12 12 C 1.34776 * 120.63429 * 126.46368 * 11 10 9 13 13 O 1.21278 * 120.00313 * 179.97438 * 12 11 10 14 14 C 1.50705 * 119.99424 * 0.02562 * 12 11 10 15 15 N 1.46497 * 109.46836 * 179.97438 * 14 12 11 16 16 C 1.46504 * 120.00317 * 269.99884 * 15 14 12 17 17 C 1.36939 * 120.00226 * 89.99958 * 15 14 12 18 18 H 1.07996 * 119.99799 * 22.35298 * 17 15 14 19 19 C 1.38811 * 120.00422 * 202.34998 * 17 15 14 20 20 N 1.31627 * 119.99768 * 11.44034 * 19 17 15 21 21 Si 1.86794 * 120.00278 * 191.43604 * 19 17 15 22 22 H 1.48496 * 109.47240 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46868 * 119.99825 * 21 19 17 24 24 H 1.48494 * 109.47354 * 240.00044 * 21 19 17 25 25 C 1.46969 * 118.71499 * 306.64627 * 11 10 9 26 26 H 1.08999 * 109.46951 * 299.99435 * 1 2 3 27 27 H 1.08999 * 109.47171 * 59.99535 * 1 2 3 28 28 H 1.08998 * 109.46794 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46951 * 240.00565 * 2 1 3 30 30 H 1.08996 * 109.47400 * 119.99993 * 2 1 3 31 31 H 1.08994 * 109.45351 * 61.29833 * 8 6 4 32 32 H 1.08997 * 109.44588 * 301.33401 * 8 6 4 33 33 H 1.08997 * 109.49548 * 178.68483 * 9 8 6 34 34 H 1.08999 * 109.49560 * 58.59372 * 9 8 6 35 35 H 1.09001 * 109.58470 * 174.42640 * 10 9 8 36 36 H 1.09001 * 109.58535 * 294.71116 * 10 9 8 37 37 H 1.08999 * 109.47308 * 299.99394 * 14 12 11 38 38 H 1.08995 * 109.47197 * 59.99896 * 14 12 11 39 39 H 1.09005 * 109.47183 * 94.11628 * 16 15 14 40 40 H 1.08991 * 109.47538 * 214.12355 * 16 15 14 41 41 H 1.09001 * 109.46665 * 334.12613 * 16 15 14 42 42 H 0.96994 * 119.99996 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.46268 * 293.56736 * 25 11 10 44 44 H 1.09000 * 109.59227 * 173.21585 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9207 2.9375 0.0012 7 1 3.5838 3.4706 0.8902 8 6 5.4491 2.8581 0.0023 9 6 6.0349 4.2715 0.0361 10 6 5.5913 5.0339 -1.2164 11 7 4.1254 4.9905 -1.3055 12 6 3.4110 6.1265 -1.4305 13 8 2.2015 6.0773 -1.5036 14 6 4.1155 7.4578 -1.4807 15 7 3.1258 8.5290 -1.6189 16 6 2.7103 8.9751 -2.9511 17 6 2.5889 9.1134 -0.5030 18 1 3.1175 9.0680 0.4377 19 6 1.3653 9.7643 -0.5807 20 7 0.6163 9.6314 -1.6549 21 14 0.7815 10.8286 0.8391 22 1 1.7995 10.8137 1.9201 23 1 0.5843 12.2219 0.3647 24 1 -0.5030 10.2968 1.3608 25 6 3.4531 3.6847 -1.2516 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.7867 2.3465 -0.8989 32 1 5.7831 2.3054 0.8804 33 1 7.1231 4.2138 0.0605 34 1 5.6778 4.7922 0.9246 35 1 5.9229 6.0702 -1.1499 36 1 6.0251 4.5675 -2.1009 37 1 4.6830 7.6035 -0.5615 38 1 4.7938 7.4781 -2.3336 39 1 1.8088 8.4396 -3.2489 40 1 2.5064 10.0455 -2.9287 41 1 3.5067 8.7718 -3.6670 42 1 -0.2385 10.0865 -1.7094 43 1 3.7105 3.1068 -2.1393 44 1 2.3738 3.8308 -1.2085 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101919341.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:25 Heat of formation + Delta-G solvation = -96.326805 kcal Electronic energy + Delta-G solvation = -25132.979338 eV Core-core repulsion = 21472.452893 eV Total energy + Delta-G solvation = -3660.526445 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.85186 -39.39858 -37.27988 -36.46525 -34.98248 -32.88253 -32.02309 -31.38485 -30.95979 -27.45035 -25.78779 -25.29232 -24.45265 -23.13573 -21.84549 -21.36148 -20.13616 -18.61626 -17.72800 -16.82982 -16.79698 -16.69440 -16.03748 -15.48368 -14.94348 -14.60123 -14.46916 -14.09817 -13.82742 -13.60815 -13.45868 -13.16749 -13.06331 -12.76944 -12.62736 -12.42214 -12.11154 -11.79285 -11.71923 -11.51631 -11.23421 -11.06053 -10.99028 -10.81086 -10.70708 -10.65911 -10.62268 -10.49049 -10.32407 -9.96029 -9.85575 -9.00598 -8.45579 -8.23680 -6.73061 -5.66056 -3.12942 2.05156 2.50795 3.37502 3.46231 3.47988 3.50662 3.53511 4.45242 4.53266 4.56360 4.69860 4.75071 4.77797 4.91195 5.02026 5.05261 5.16112 5.31465 5.41822 5.46990 5.54150 5.58014 5.60319 5.66947 5.73412 5.80450 5.81568 5.83137 5.90659 6.11182 6.15929 6.19926 6.27357 6.32100 6.75745 6.89693 7.42228 7.62465 7.78453 7.88082 7.97519 8.42052 9.07517 9.26772 9.88050 10.35400 11.38646 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.015688 B = 0.003953 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.346455 B = 7081.224071 C = 8027.928855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.352 6.352 4 C 0.473 3.527 5 O -0.512 6.512 6 C -0.096 4.096 7 H 0.113 0.887 8 C -0.100 4.100 9 C -0.135 4.135 10 C 0.109 3.891 11 N -0.629 5.629 12 C 0.474 3.526 13 O -0.503 6.503 14 C 0.135 3.865 15 N -0.573 5.573 16 C 0.163 3.837 17 C -0.259 4.259 18 H 0.070 0.930 19 C 0.010 3.990 20 N -0.896 5.896 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.123 3.877 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.033 0.967 40 H 0.049 0.951 41 H -0.004 1.004 42 H 0.251 0.749 43 H 0.060 0.940 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.132 -16.191 1.861 18.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.269 6.269 4 C 0.316 3.684 5 O -0.400 6.400 6 C -0.116 4.116 7 H 0.131 0.869 8 C -0.138 4.138 9 C -0.173 4.173 10 C -0.014 4.014 11 N -0.369 5.369 12 C 0.260 3.740 13 O -0.374 6.374 14 C 0.002 3.998 15 N -0.293 5.293 16 C 0.019 3.981 17 C -0.389 4.389 18 H 0.088 0.912 19 C -0.190 4.190 20 N -0.539 5.539 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.217 1.217 25 C -0.002 4.002 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.068 0.932 41 H 0.014 0.986 42 H 0.062 0.938 43 H 0.079 0.921 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.421 -16.328 1.738 18.454 hybrid contribution -0.496 -0.014 0.861 0.994 sum 7.924 -16.342 2.598 18.347 Atomic orbital electron populations 1.21817 0.92496 1.02836 1.03990 1.23032 0.95588 0.80234 1.02372 1.86587 1.24441 1.32276 1.83565 1.23681 0.80560 0.92427 0.71776 1.90638 1.60518 1.43118 1.45685 1.21541 0.97164 0.89684 1.03244 0.86915 1.21406 0.91387 0.97466 1.03536 1.21957 1.00842 0.95248 0.99287 1.21648 0.80764 1.01784 0.97219 1.48798 1.06428 1.05615 1.76037 1.23826 0.89284 0.86093 0.74808 1.90703 1.14239 1.86041 1.46380 1.21056 0.93212 0.84876 1.00616 1.43924 1.47463 1.34030 1.03875 1.20860 0.95012 0.99373 0.82848 1.19189 1.00814 1.29033 0.89853 0.91249 1.25080 0.95474 1.01065 0.97371 1.70111 1.11520 1.44273 1.28019 0.86188 0.78523 0.79949 0.81854 1.20287 1.21574 1.21693 1.21267 1.00234 0.84714 0.93938 0.91319 0.91175 0.90324 0.91275 0.91361 0.90933 0.90982 0.90215 0.90992 0.89145 0.91911 0.90872 0.91531 0.94820 0.93229 0.98561 0.93814 0.92127 0.88016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.29 37.16 0.38 -0.89 16 2 C 0.06 0.63 6.19 37.16 0.23 0.86 16 3 O -0.35 -4.64 10.15 -39.26 -0.40 -5.04 16 4 C 0.47 6.29 7.26 36.01 0.26 6.56 16 5 O -0.51 -7.52 15.73 -18.75 -0.29 -7.82 16 6 C -0.10 -1.20 2.78 -91.65 -0.25 -1.45 16 7 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 8 C -0.10 -1.05 4.46 -26.69 -0.12 -1.17 16 9 C -0.14 -1.27 6.08 -26.61 -0.16 -1.43 16 10 C 0.11 1.21 6.34 -3.71 -0.02 1.19 16 11 N -0.63 -9.75 2.98 -172.74 -0.51 -10.26 16 12 C 0.47 9.80 7.77 -10.98 -0.09 9.71 16 13 O -0.50 -13.23 15.85 5.56 0.09 -13.14 16 14 C 0.14 2.71 4.54 -5.19 -0.02 2.68 16 15 N -0.57 -14.77 2.41 -182.50 -0.44 -15.21 16 16 C 0.16 4.17 9.01 59.85 0.54 4.71 16 17 C -0.26 -7.29 9.67 -15.06 -0.15 -7.43 16 18 H 0.07 1.88 7.84 -52.49 -0.41 1.47 16 19 C 0.01 0.28 5.13 -17.43 -0.09 0.19 16 20 N -0.90 -27.19 10.59 55.49 0.59 -26.60 16 21 Si 0.90 22.33 29.57 -169.99 -5.03 17.30 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 C 0.12 1.79 5.64 -3.69 -0.02 1.77 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 30 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 31 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 32 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.94 5.93 -51.93 -0.31 0.63 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 1.33 7.58 -51.93 -0.39 0.93 16 38 H 0.07 1.13 7.66 -51.93 -0.40 0.73 16 39 H 0.03 0.96 7.42 -51.93 -0.39 0.58 16 40 H 0.05 1.33 7.18 -51.93 -0.37 0.95 16 41 H 0.00 -0.09 7.84 -51.93 -0.41 -0.50 16 42 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.10 1.77 7.01 -51.93 -0.36 1.40 16 LS Contribution 358.15 15.07 5.40 5.40 Total: -1.00 -35.68 358.15 -7.36 -43.04 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -7.24 Total: -2.95 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 0.49 Total: 15.28 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.37 Total: -52.07 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.61 Total: -26.00 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.68 -7.36 -43.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101919341.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.289 kcal (2) G-P(sol) polarization free energy of solvation -35.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds