Wall clock time and date at job start Tue Mar 31 2020 04:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47105 * 2 1 4 4 C 1.50699 * 109.46963 * 120.00065 * 2 1 3 5 5 O 1.21282 * 120.00116 * 97.77222 * 4 2 1 6 6 N 1.34776 * 119.99945 * 277.76990 * 4 2 1 7 7 C 1.46502 * 120.00189 * 0.02562 * 6 4 2 8 8 C 1.46500 * 119.99974 * 180.02562 * 6 4 2 9 9 C 1.50700 * 109.47102 * 90.00131 * 8 6 4 10 10 H 1.08000 * 120.00121 * 359.97438 * 9 8 6 11 11 C 1.37880 * 119.99879 * 179.97438 * 9 8 6 12 12 N 1.31513 * 120.00009 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99874 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47076 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46840 * 120.00075 * 13 11 9 16 16 H 1.48498 * 109.47293 * 240.00271 * 13 11 9 17 17 N 1.46902 * 109.47153 * 239.99959 * 2 1 3 18 18 C 1.47900 * 110.99769 * 173.72052 * 17 2 1 19 19 C 1.53996 * 107.05655 * 214.15321 * 18 17 2 20 20 C 1.54601 * 105.13858 * 1.23038 * 19 18 17 21 21 H 1.09000 * 110.71994 * 263.59375 * 20 19 18 22 22 N 1.46495 * 110.72441 * 140.49559 * 20 19 18 23 23 C 1.37342 * 120.00678 * 86.45044 * 22 20 19 24 24 N 1.30092 * 120.00324 * 179.97438 * 23 22 20 25 25 O 1.35098 * 119.99453 * 359.97438 * 23 22 20 26 26 C 1.48530 * 110.99934 * 56.32452 * 17 2 1 27 27 H 1.09007 * 109.47291 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47411 * 300.00119 * 1 2 3 29 29 H 1.09003 * 109.47110 * 60.00485 * 1 2 3 30 30 H 1.08998 * 109.47344 * 89.99566 * 7 6 4 31 31 H 1.09001 * 109.46872 * 209.99948 * 7 6 4 32 32 H 1.09002 * 109.46788 * 329.99723 * 7 6 4 33 33 H 1.09000 * 109.47174 * 210.00417 * 8 6 4 34 34 H 1.09006 * 109.47104 * 329.99788 * 8 6 4 35 35 H 0.97000 * 119.99882 * 180.02562 * 12 11 9 36 36 H 1.08993 * 109.91878 * 333.50720 * 18 17 2 37 37 H 1.09000 * 109.91544 * 94.61046 * 18 17 2 38 38 H 1.08997 * 110.30519 * 120.14069 * 19 18 17 39 39 H 1.08994 * 110.30989 * 242.20946 * 19 18 17 40 40 H 0.97005 * 119.99436 * 266.44911 * 22 20 19 41 41 H 0.97000 * 120.00386 * 179.97438 * 24 23 22 42 42 H 0.96696 * 113.99472 * 179.97438 * 25 23 22 43 43 H 1.09007 * 110.66604 * 278.15277 * 26 17 2 44 44 H 1.08997 * 110.67145 * 41.27974 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3684 -1.8739 1.1643 6 7 2.1081 -0.0529 2.4045 7 6 1.7018 1.3524 2.4846 8 6 2.5970 -0.7433 3.6005 9 6 4.0916 -0.5785 3.7001 10 1 4.6242 -0.0162 2.9474 11 6 4.7792 -1.1458 4.7520 12 7 4.1307 -1.8311 5.6682 13 14 6.6320 -0.9422 4.8750 14 1 7.1184 -0.1345 3.7278 15 1 6.9707 -0.2513 6.1451 16 1 7.2796 -2.2783 4.8502 17 7 2.0197 -0.6925 -1.1994 18 6 3.4904 -0.5828 -1.3115 19 6 3.8243 -0.5027 -2.8126 20 6 2.4570 -0.5418 -3.5331 21 1 2.2199 -1.5556 -3.8558 22 7 2.4448 0.3790 -4.6724 23 6 2.9052 -0.0379 -5.8974 24 7 2.8939 0.7797 -6.9092 25 8 3.3698 -1.2971 -6.0515 26 6 1.4722 -0.0722 -2.4330 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 0.6411 1.4105 2.7290 31 1 2.2813 1.8546 3.2593 32 1 1.8806 1.8376 1.5250 33 1 2.1246 -0.3162 4.4852 34 1 2.3519 -1.8034 3.5338 35 1 4.6143 -2.2298 6.4085 36 1 3.8350 0.3191 -0.8058 37 1 3.9629 -1.4599 -0.8693 38 1 4.3428 0.4297 -3.0356 39 1 4.4350 -1.3550 -3.1103 40 1 2.1116 1.2833 -4.5616 41 1 3.2194 0.4854 -7.7743 42 1 3.6712 -1.4980 -6.9480 43 1 0.4662 -0.4402 -2.6347 44 1 1.4762 1.0147 -2.3515 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330534877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:31:06 Heat of formation + Delta-G solvation = -62.902043 kcal Electronic energy + Delta-G solvation = -24942.679237 eV Core-core repulsion = 21315.894949 eV Total energy + Delta-G solvation = -3626.784288 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.32101 -40.36109 -39.25804 -36.56876 -36.14245 -34.81794 -34.02278 -32.57379 -30.19460 -29.28164 -29.03451 -27.35699 -25.75695 -23.97086 -23.23039 -22.00502 -21.90412 -19.89618 -18.94585 -18.71003 -18.12812 -17.84946 -17.41760 -16.78409 -16.59368 -16.25493 -15.87007 -15.65672 -15.54825 -14.96785 -14.70887 -14.41794 -14.29110 -14.08364 -13.69931 -13.47871 -13.42700 -13.15660 -13.10538 -13.00342 -12.84821 -12.63971 -12.49486 -12.27378 -12.26902 -12.20779 -11.70855 -11.65801 -11.29008 -10.66038 -10.54937 -10.44597 -9.40379 -9.36832 -9.29243 -8.23317 -6.38145 1.34609 1.37207 1.48610 1.72007 1.80833 1.89381 2.27726 2.40751 2.93212 3.06067 3.27909 3.45670 3.62617 3.85809 3.95886 4.01164 4.17688 4.21870 4.39200 4.46791 4.56327 4.67655 4.73259 4.80146 4.83183 4.85589 4.95131 4.97738 5.01237 5.05296 5.13588 5.23059 5.28598 5.55648 5.74940 5.81652 5.88489 5.93647 6.01825 6.05865 6.70261 6.72877 6.82588 7.28429 7.54820 7.76494 8.83868 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.020110 B = 0.003426 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.029065 B = 8170.271533 C = 9044.425775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.068 3.932 3 H 0.086 0.914 4 C 0.499 3.501 5 O -0.581 6.581 6 N -0.612 5.612 7 C 0.076 3.924 8 C 0.261 3.739 9 C -0.539 4.539 10 H 0.051 0.949 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.267 1.267 15 H -0.268 1.268 16 H -0.282 1.282 17 N -0.510 5.510 18 C 0.042 3.958 19 C -0.131 4.131 20 C 0.164 3.836 21 H 0.094 0.906 22 N -0.683 5.683 23 C 0.592 3.408 24 N -0.846 5.846 25 O -0.541 6.541 26 C 0.038 3.962 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.024 0.976 34 H -0.005 1.005 35 H 0.267 0.733 36 H 0.040 0.960 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.429 0.571 41 H 0.353 0.647 42 H 0.430 0.570 43 H 0.108 0.892 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.289 8.944 -21.367 24.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.044 4.044 3 H 0.103 0.897 4 C 0.287 3.713 5 O -0.460 6.460 6 N -0.344 5.344 7 C -0.066 4.066 8 C 0.139 3.861 9 C -0.578 4.578 10 H 0.069 0.931 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.192 1.192 15 H -0.193 1.193 16 H -0.208 1.208 17 N -0.236 5.236 18 C -0.087 4.087 19 C -0.171 4.171 20 C 0.058 3.942 21 H 0.112 0.888 22 N -0.332 5.332 23 C 0.275 3.725 24 N -0.510 5.510 25 O -0.338 6.338 26 C -0.090 4.090 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.042 0.958 34 H 0.013 0.987 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.270 0.730 41 H 0.171 0.829 42 H 0.289 0.711 43 H 0.126 0.874 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.607 8.199 -20.514 23.059 hybrid contribution 1.924 -0.269 -0.110 1.946 sum -4.684 7.930 -20.624 22.587 Atomic orbital electron populations 1.21802 0.89660 1.03127 1.04618 1.21860 0.98938 0.95763 0.87812 0.89675 1.21141 0.77976 0.86992 0.85191 1.90637 1.50479 1.19368 1.85481 1.48191 1.63336 1.13322 1.09589 1.21991 1.00706 0.80154 1.03706 1.18724 0.93477 0.91577 0.82324 1.21703 0.93631 1.33689 1.08773 0.93064 1.25860 1.03739 0.94447 0.95156 1.70057 1.37872 1.35463 1.13461 0.85378 0.79081 0.77965 0.78447 1.19151 1.19308 1.20798 1.64444 1.05773 1.52273 1.01111 1.22714 0.88833 1.00095 0.97039 1.22800 0.98464 1.03147 0.92710 1.21620 0.94001 0.93860 0.84755 0.88841 1.43546 1.69050 1.16489 1.04118 1.20170 0.85287 0.79249 0.87790 1.69696 1.40515 1.37154 1.03662 1.84618 1.78390 1.30315 1.40481 1.23485 0.99306 0.98977 0.87219 0.92956 0.90454 0.88011 0.90763 0.91613 0.89157 0.95834 0.98658 0.92400 0.94202 0.93305 0.90057 0.90991 0.73044 0.82865 0.71139 0.87370 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.89 71.98 0.64 -2.16 16 2 C 0.07 1.88 1.49 44.17 0.07 1.95 16 3 H 0.09 1.95 5.97 -2.39 -0.01 1.93 16 4 C 0.50 20.91 6.33 87.66 0.55 21.47 16 5 O -0.58 -31.00 15.59 -3.04 -0.05 -31.05 16 6 N -0.61 -26.02 2.86 -851.12 -2.43 -28.45 16 7 C 0.08 2.22 9.69 127.77 1.24 3.46 16 8 C 0.26 14.25 5.16 85.63 0.44 14.69 16 9 C -0.54 -31.44 9.39 25.60 0.24 -31.20 16 10 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 11 C 0.01 0.40 5.46 84.66 0.46 0.86 16 12 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 13 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 17 N -0.51 -13.90 4.76 -862.26 -4.11 -18.01 16 18 C 0.04 1.22 5.83 86.45 0.50 1.72 16 19 C -0.13 -2.84 6.67 31.48 0.21 -2.63 16 20 C 0.16 2.91 3.38 46.20 0.16 3.07 16 21 H 0.09 1.88 7.71 -2.39 -0.02 1.86 16 22 N -0.68 -10.39 5.25 -435.87 -2.29 -12.68 16 23 C 0.59 9.85 9.05 179.63 1.63 11.47 16 24 N -0.85 -15.02 14.11 -174.50 -2.46 -17.48 16 25 O -0.54 -7.54 12.63 -83.73 -1.06 -8.59 16 26 C 0.04 0.64 4.86 86.65 0.42 1.06 16 27 H 0.05 1.31 8.14 -2.38 -0.02 1.30 16 28 H 0.08 1.46 7.24 -2.39 -0.02 1.45 16 29 H 0.10 1.35 6.86 -2.39 -0.02 1.33 16 30 H 0.07 1.74 7.80 -2.39 -0.02 1.72 16 31 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 32 H 0.09 1.98 5.90 -2.39 -0.01 1.96 16 33 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 34 H 0.00 -0.30 7.42 -2.38 -0.02 -0.32 16 35 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.04 1.17 7.63 -2.39 -0.02 1.16 16 37 H 0.05 1.84 7.86 -2.39 -0.02 1.82 16 38 H 0.08 1.60 8.05 -2.39 -0.02 1.59 16 39 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.43 5.46 8.65 -92.70 -0.80 4.66 16 41 H 0.35 4.78 8.58 -92.71 -0.80 3.99 16 42 H 0.43 1.89 8.72 -74.06 -0.65 1.25 16 43 H 0.11 1.56 7.65 -2.38 -0.02 1.54 16 44 H 0.08 0.95 7.90 -2.39 -0.02 0.93 16 Total: -1.00 -81.40 358.05 -4.73 -86.13 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -1.20 Total: 15.49 kcal Atomic # 6 Polarization: 17.21 SS G_CDS: 6.56 Total: 23.77 kcal Atomic # 7 Polarization: -122.11 SS G_CDS: -11.01 Total: -133.12 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -1.10 Total: -39.64 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -81.40 -4.73 -86.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330534877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.230 kcal (2) G-P(sol) polarization free energy of solvation -81.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds