Wall clock time and date at job start Tue Mar 31 2020 03:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00042 * 2 1 4 4 C 1.53000 * 112.85185 * 294.62720 * 3 2 1 5 5 N 1.46495 * 109.47143 * 288.92302 * 4 3 2 6 6 C 1.34785 * 119.99954 * 175.19621 * 5 4 3 7 7 O 1.21348 * 119.99872 * 359.72255 * 6 5 4 8 8 C 1.49444 * 120.00164 * 179.72317 * 6 5 4 9 9 O 1.21348 * 119.99963 * 359.97438 * 8 6 5 10 10 N 1.34775 * 120.00302 * 180.02562 * 8 6 5 11 11 C 1.46499 * 120.00013 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.46842 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.47150 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47273 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00078 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00105 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99840 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99930 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47410 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47102 * 120.00308 * 18 16 14 21 21 H 1.48498 * 109.47382 * 240.00317 * 18 16 14 22 22 C 1.53786 * 113.69104 * 65.90007 * 3 2 1 23 23 C 1.53783 * 87.08018 * 89.12368 * 22 3 2 24 24 C 1.53779 * 87.08005 * 25.43444 * 23 22 3 25 25 H 1.09000 * 109.47054 * 56.26278 * 1 2 3 26 26 H 1.08997 * 109.47055 * 176.26884 * 1 2 3 27 27 H 1.09002 * 109.46695 * 296.26326 * 1 2 3 28 28 H 1.08999 * 109.47141 * 168.92155 * 4 3 2 29 29 H 1.09005 * 109.46951 * 48.92187 * 4 3 2 30 30 H 0.96997 * 120.00547 * 354.92040 * 5 4 3 31 31 H 0.97005 * 119.99687 * 359.97438 * 10 8 6 32 32 H 1.09003 * 109.46771 * 299.99539 * 11 10 8 33 33 H 1.08996 * 109.47781 * 59.99887 * 11 10 8 34 34 H 1.08997 * 109.47207 * 300.00079 * 12 11 10 35 35 H 1.09006 * 109.47446 * 59.99689 * 12 11 10 36 36 H 1.09003 * 109.46658 * 299.99680 * 13 12 11 37 37 H 1.08993 * 109.47003 * 59.99378 * 13 12 11 38 38 H 0.96998 * 119.99352 * 179.97438 * 17 16 14 39 39 H 1.08998 * 113.61110 * 203.67888 * 22 3 2 40 40 H 1.08997 * 113.61126 * 334.57224 * 22 3 2 41 41 H 1.08996 * 113.61488 * 270.88432 * 23 22 3 42 42 H 1.09000 * 113.60937 * 139.98472 * 23 22 3 43 43 H 1.09000 * 113.60853 * 220.01549 * 24 23 22 44 44 H 1.09001 * 113.61715 * 89.11541 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7152 2.0872 -1.2817 5 7 2.4719 1.5061 -2.3933 6 6 2.2950 1.9722 -3.6455 7 8 1.5052 2.8699 -3.8528 8 6 3.0715 1.3836 -4.7786 9 8 3.8616 0.4862 -4.5713 10 7 2.8950 1.8501 -6.0307 11 6 3.6558 1.2726 -7.1416 12 6 3.2695 1.9760 -8.4443 13 6 4.0645 1.3734 -9.6044 14 6 3.6836 2.0657 -10.8876 15 1 2.9477 2.8561 -10.8769 16 6 4.2745 1.6900 -12.0753 17 7 5.1702 0.7271 -12.0884 18 14 3.8018 2.5477 -13.6660 19 1 2.7795 3.5871 -13.3831 20 1 5.0038 3.1852 -14.2607 21 1 3.2465 1.5530 -14.6186 22 6 1.7363 2.1038 1.2855 23 6 3.0186 1.4749 1.8557 24 6 3.4946 1.3188 0.4018 25 1 -0.3633 0.5707 -0.8546 26 1 -0.3633 -1.0255 -0.0669 27 1 -0.3633 0.4548 0.9216 28 1 2.0082 3.1285 -1.1477 29 1 0.6488 2.0352 -1.5016 30 1 3.1032 0.7885 -2.2277 31 1 2.2637 2.5676 -6.1964 32 1 4.7223 1.4051 -6.9591 33 1 3.4303 0.2093 -7.2225 34 1 2.2031 1.8432 -8.6264 35 1 3.4947 3.0395 -8.3637 36 1 5.1309 1.5066 -9.4219 37 1 3.8398 0.3099 -9.6851 38 1 5.5856 0.4626 -12.9241 39 1 1.8018 3.1835 1.1512 40 1 0.8297 1.7953 1.8062 41 1 2.8504 0.5257 2.3644 42 1 3.6222 2.1687 2.4408 43 1 4.0076 0.3766 0.2092 44 1 4.0409 2.1840 0.0259 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343150236.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:29 Heat of formation + Delta-G solvation = -131.243348 kcal Electronic energy + Delta-G solvation = -23590.819210 eV Core-core repulsion = 19928.778670 eV Total energy + Delta-G solvation = -3662.040540 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.88635 -40.97319 -39.55121 -37.21711 -36.62107 -35.79652 -35.09549 -33.04801 -29.88689 -28.80645 -28.08552 -26.53528 -25.94468 -24.33117 -23.15918 -22.37575 -21.37677 -20.50597 -19.66648 -18.53762 -17.99069 -17.45576 -17.25491 -16.92690 -16.70401 -16.40325 -16.18766 -16.14210 -15.76412 -15.22450 -15.09049 -14.88787 -14.62186 -14.28380 -13.77865 -13.77139 -13.49740 -13.31209 -12.96657 -12.78860 -12.77491 -12.55607 -12.39204 -12.37506 -12.02480 -11.71617 -11.70900 -11.57020 -11.22535 -11.16015 -10.82079 -10.55768 -10.43185 -10.40831 -10.29453 -8.19857 -6.30642 0.27367 1.23764 1.41618 1.42124 1.55182 2.07251 2.40918 2.50083 2.69653 3.14089 3.34680 3.48595 3.55468 3.60312 3.86766 4.07726 4.17632 4.26855 4.35863 4.40951 4.46692 4.52022 4.58377 4.76072 4.80990 4.85731 4.87810 4.91078 4.99721 5.06129 5.09533 5.14591 5.18551 5.22074 5.36915 5.51558 5.70436 5.84269 5.84368 6.18345 6.22562 6.29464 6.65733 6.86507 6.87755 7.38705 8.92277 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.041701 B = 0.002065 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.284775 B =13552.913346 C =13687.337151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.377 6.377 3 C 0.069 3.931 4 C 0.101 3.899 5 N -0.682 5.682 6 C 0.514 3.486 7 O -0.540 6.540 8 C 0.501 3.499 9 O -0.548 6.548 10 N -0.686 5.686 11 C 0.127 3.873 12 C -0.106 4.106 13 C 0.024 3.976 14 C -0.541 4.541 15 H 0.064 0.936 16 C -0.003 4.003 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.260 1.260 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.149 4.149 23 C -0.129 4.129 24 C -0.131 4.131 25 H 0.042 0.958 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.418 0.582 31 H 0.419 0.581 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.067 0.933 36 H -0.003 1.003 37 H -0.004 1.004 38 H 0.263 0.737 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.697 3.231 30.586 31.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.296 6.296 3 C 0.029 3.971 4 C -0.021 4.021 5 N -0.335 5.335 6 C 0.294 3.706 7 O -0.418 6.418 8 C 0.281 3.719 9 O -0.426 6.426 10 N -0.338 5.338 11 C 0.004 3.996 12 C -0.144 4.144 13 C -0.013 4.013 14 C -0.579 4.579 15 H 0.083 0.917 16 C -0.201 4.201 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.184 1.184 20 H -0.205 1.205 21 H -0.206 1.206 22 C -0.187 4.187 23 C -0.166 4.166 24 C -0.168 4.168 25 H 0.060 0.940 26 H 0.113 0.887 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.093 0.907 30 H 0.255 0.745 31 H 0.257 0.743 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.015 0.985 37 H 0.014 0.986 38 H 0.072 0.928 39 H 0.126 0.874 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.496 2.970 30.485 31.786 hybrid contribution -0.157 0.118 -1.244 1.260 sum -8.653 3.088 29.241 30.651 Atomic orbital electron populations 1.22939 0.79952 1.03698 1.00979 1.87942 1.21059 1.25785 1.94782 1.22985 0.97051 0.84426 0.92657 1.22141 0.96907 0.98312 0.84784 1.45645 1.43510 1.38774 1.05548 1.19941 0.82951 0.83163 0.84525 1.90754 1.36465 1.30058 1.84499 1.20326 0.83393 0.83405 0.84742 1.90756 1.36914 1.30368 1.84552 1.45875 1.43150 1.38696 1.06065 1.21485 0.95618 0.97802 0.84712 1.21641 1.00747 0.99852 0.92113 1.18941 0.94594 0.95184 0.92626 1.21706 1.23370 1.19431 0.93359 0.91745 1.26001 0.94987 0.95887 1.03221 1.70108 1.28758 1.30589 1.27903 0.85378 0.78289 0.78526 0.78713 1.18420 1.20533 1.20560 1.23496 0.99749 1.00942 0.94536 1.22731 0.96721 1.01548 0.95645 1.23094 0.92795 1.03661 0.97255 0.93980 0.88686 0.92099 0.88691 0.90729 0.74459 0.74316 0.91662 0.91805 0.91463 0.91385 0.98497 0.98561 0.92793 0.87386 0.89951 0.90115 0.89606 0.90811 0.87561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.63 113.37 1.21 1.44 16 2 O -0.38 -6.07 10.56 -148.98 -1.57 -7.65 16 3 C 0.07 0.87 0.77 -10.27 -0.01 0.87 16 4 C 0.10 1.55 5.12 86.38 0.44 1.99 16 5 N -0.68 -13.74 5.41 -464.41 -2.51 -16.26 16 6 C 0.51 13.22 7.89 87.27 0.69 13.91 16 7 O -0.54 -15.52 16.47 -3.24 -0.05 -15.58 16 8 C 0.50 14.92 7.89 87.27 0.69 15.60 16 9 O -0.55 -18.81 16.48 -3.24 -0.05 -18.87 16 10 N -0.69 -20.25 5.55 -464.42 -2.58 -22.83 16 11 C 0.13 4.37 5.67 86.38 0.49 4.86 16 12 C -0.11 -4.07 5.27 30.60 0.16 -3.91 16 13 C 0.02 1.25 4.97 29.85 0.15 1.40 16 14 C -0.54 -30.18 9.11 25.60 0.23 -29.95 16 15 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 16 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 17 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 18 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 19 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 22 C -0.15 -1.23 7.21 31.12 0.22 -1.01 16 23 C -0.13 -1.13 8.02 31.12 0.25 -0.88 16 24 C -0.13 -1.47 6.90 31.12 0.21 -1.26 16 25 H 0.04 0.52 6.48 -2.39 -0.02 0.51 16 26 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 0.51 6.84 -2.39 -0.02 0.49 16 28 H 0.10 1.27 7.95 -2.39 -0.02 1.25 16 29 H 0.07 1.22 6.48 -2.38 -0.02 1.20 16 30 H 0.42 8.30 7.57 -92.71 -0.70 7.59 16 31 H 0.42 11.05 7.94 -92.70 -0.74 10.32 16 32 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 36 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.11 0.62 7.96 -2.39 -0.02 0.60 16 40 H 0.08 0.61 6.81 -2.39 -0.02 0.60 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.11 1.02 8.10 -2.39 -0.02 1.00 16 Total: -1.00 -69.09 367.12 0.32 -68.78 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -0.43 Total: 19.44 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 5.20 Total: 3.33 kcal Atomic # 7 Polarization: -90.66 SS G_CDS: -4.81 Total: -95.47 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -1.68 Total: -42.09 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -69.09 0.32 -68.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343150236.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.468 kcal (2) G-P(sol) polarization free energy of solvation -69.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds