Wall clock time and date at job start Tue Mar 31 2020 03:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 H 1.09000 * 109.47461 * 59.71633 * 5 3 2 7 7 N 1.46896 * 109.47652 * 179.72202 * 5 3 2 8 8 C 1.46900 * 111.00052 * 205.00227 * 7 5 3 9 9 H 1.09000 * 109.47257 * 324.99150 * 8 7 5 10 10 C 1.52993 * 109.47485 * 84.99864 * 8 7 5 11 11 C 1.50702 * 109.46775 * 204.99783 * 8 7 5 12 12 O 1.21286 * 120.00163 * 359.97438 * 11 8 7 13 13 N 1.34782 * 119.99985 * 179.97438 * 11 8 7 14 14 C 1.46502 * 119.99723 * 359.97438 * 13 11 8 15 15 C 1.46494 * 120.00139 * 179.97438 * 13 11 8 16 16 C 1.50701 * 109.47077 * 89.99902 * 15 13 11 17 17 H 1.07994 * 120.00250 * 0.02562 * 16 15 13 18 18 C 1.37882 * 119.99853 * 180.02562 * 16 15 13 19 19 N 1.31512 * 120.00224 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99795 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47152 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46976 * 119.99846 * 20 18 16 23 23 H 1.48492 * 109.47115 * 239.99645 * 20 18 16 24 24 C 1.53002 * 109.46796 * 299.72392 * 5 3 2 25 25 C 1.52997 * 117.50269 * 128.62061 * 24 5 3 26 26 C 1.52998 * 60.00153 * 252.50596 * 25 24 5 27 27 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 29 29 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 30 30 H 1.00907 * 110.99619 * 328.94912 * 7 5 3 31 31 H 1.09000 * 109.47453 * 59.99965 * 10 8 7 32 32 H 1.08999 * 109.47151 * 180.02562 * 10 8 7 33 33 H 1.09002 * 109.47170 * 299.99592 * 10 8 7 34 34 H 1.08996 * 109.47079 * 90.00271 * 14 13 11 35 35 H 1.09002 * 109.46788 * 210.00033 * 14 13 11 36 36 H 1.08999 * 109.47133 * 330.00117 * 14 13 11 37 37 H 1.09000 * 109.47435 * 209.99933 * 15 13 11 38 38 H 1.09008 * 109.47190 * 330.00392 * 15 13 11 39 39 H 0.96998 * 119.99971 * 179.97438 * 19 18 16 40 40 H 1.09006 * 115.54705 * 274.32642 * 24 5 3 41 41 H 1.09004 * 117.49512 * 0.02562 * 25 24 5 42 42 H 1.09000 * 117.50046 * 145.01668 * 25 24 5 43 43 H 1.08993 * 117.49933 * 252.51085 * 26 25 24 44 44 H 1.09003 * 117.51434 * 107.47480 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 1 3.9525 0.7785 -0.8964 7 7 3.9828 2.6837 -0.0117 8 6 5.3216 2.8345 -0.5971 9 1 5.9327 1.9712 -0.3337 10 6 5.2047 2.9314 -2.1194 11 6 5.9655 4.0876 -0.0619 12 8 5.3677 4.7864 0.7288 13 7 7.2056 4.4318 -0.4621 14 6 7.9279 3.5873 -1.4169 15 6 7.8313 5.6501 0.0576 16 6 8.5996 5.3243 1.3125 17 1 8.6201 4.3110 1.6853 18 6 9.2763 6.3200 1.9846 19 7 9.2518 7.5539 1.5304 20 14 10.2281 5.9162 3.5404 21 1 10.0991 4.4669 3.8375 22 1 11.6608 6.2557 3.3464 23 1 9.6816 6.7049 4.6737 24 6 4.1183 0.5848 1.2427 25 6 5.2083 -0.4702 1.0434 26 6 3.7920 -0.8979 1.4331 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 3.3094 3.2579 -0.4964 31 1 4.5937 3.7948 -2.3828 32 1 6.1982 3.0429 -2.5538 33 1 4.7390 2.0251 -2.5065 34 1 7.7065 3.9158 -2.4323 35 1 8.9996 3.6676 -1.2345 36 1 7.6150 2.5505 -1.2940 37 1 8.5124 6.0563 -0.6902 38 1 7.0600 6.3863 0.2847 39 1 9.7276 8.2544 2.0034 40 1 4.1762 1.2061 2.1364 41 1 5.5325 -0.6722 0.0225 42 1 5.9838 -0.5429 1.8059 43 1 3.6356 -1.2519 2.4520 44 1 3.1837 -1.3815 0.6687 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348222515.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:02 Heat of formation + Delta-G solvation = -101.630416 kcal Electronic energy + Delta-G solvation = -25162.814828 eV Core-core repulsion = 21502.058400 eV Total energy + Delta-G solvation = -3660.756427 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.84936 -40.78380 -38.75698 -37.69082 -36.57476 -36.31545 -34.70382 -32.05917 -29.72920 -28.93663 -27.60309 -26.92354 -25.63492 -23.59428 -23.27419 -22.91218 -21.07767 -20.21550 -18.76748 -18.69059 -18.35232 -17.56899 -17.42812 -16.98951 -16.65110 -16.35014 -15.94834 -15.64499 -15.07784 -14.99470 -14.48065 -14.33204 -14.27324 -14.15812 -13.89804 -13.51191 -13.29415 -13.26158 -13.07231 -12.85394 -12.65608 -12.58499 -12.45920 -12.33312 -12.27588 -12.15160 -11.90145 -11.81533 -11.64835 -11.24018 -10.90462 -10.63977 -10.46271 -9.53582 -9.32770 -8.20994 -6.35688 1.03011 1.36038 1.39264 1.50460 1.52524 1.93009 2.28012 2.42321 2.84372 3.08281 3.17464 3.63835 3.71428 3.77166 3.89428 4.04693 4.06836 4.08983 4.31051 4.32680 4.33693 4.42657 4.55112 4.66108 4.71701 4.73354 4.80089 4.88433 4.95742 5.03371 5.07851 5.20372 5.21730 5.25763 5.30624 5.36777 5.58991 5.75104 5.91098 6.08766 6.14125 6.64455 6.73360 6.86809 7.30984 7.59321 8.86090 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.020069 B = 0.003654 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.842197 B = 7661.031964 C = 8039.109132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.346 6.346 3 C 0.468 3.532 4 O -0.533 6.533 5 C 0.138 3.862 6 H 0.117 0.883 7 N -0.674 5.674 8 C 0.087 3.913 9 H 0.127 0.873 10 C -0.186 4.186 11 C 0.498 3.502 12 O -0.585 6.585 13 N -0.610 5.610 14 C 0.075 3.925 15 C 0.260 3.740 16 C -0.539 4.539 17 H 0.053 0.947 18 C 0.005 3.995 19 N -0.930 5.930 20 Si 0.968 3.032 21 H -0.266 1.266 22 H -0.267 1.267 23 H -0.284 1.284 24 C -0.173 4.173 25 C -0.162 4.162 26 C -0.152 4.152 27 H 0.138 0.862 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.352 0.648 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.025 0.975 38 H -0.008 1.008 39 H 0.266 0.734 40 H 0.086 0.914 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.009 -23.280 -9.257 27.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.261 6.261 3 C 0.311 3.689 4 O -0.422 6.422 5 C 0.027 3.973 6 H 0.134 0.866 7 N -0.310 5.310 8 C -0.026 4.026 9 H 0.145 0.855 10 C -0.245 4.245 11 C 0.286 3.714 12 O -0.464 6.464 13 N -0.342 5.342 14 C -0.067 4.067 15 C 0.139 3.861 16 C -0.578 4.578 17 H 0.072 0.928 18 C -0.194 4.194 19 N -0.570 5.570 20 Si 0.792 3.208 21 H -0.190 1.190 22 H -0.192 1.192 23 H -0.210 1.210 24 C -0.193 4.193 25 C -0.198 4.198 26 C -0.190 4.190 27 H 0.156 0.844 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.175 0.825 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.043 0.957 38 H 0.011 0.989 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.136 0.864 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.272 -22.469 -8.193 26.439 hybrid contribution 0.002 0.938 0.286 0.981 sum -11.271 -21.531 -7.907 25.556 Atomic orbital electron populations 1.23576 0.74891 1.05890 1.02273 1.86498 1.24697 1.31458 1.83414 1.23863 0.92108 0.81645 0.71287 1.90687 1.67437 1.37656 1.46404 1.20726 0.86113 0.90311 1.00104 0.86580 1.59870 1.03408 1.06143 1.61557 1.21413 0.90627 0.95916 0.94611 0.85548 1.22708 1.05564 1.03511 0.92702 1.21253 0.81336 0.87694 0.81097 1.90644 1.64341 1.55198 1.36229 1.48113 1.15510 1.25900 1.44714 1.22127 0.97640 0.95061 0.91897 1.18716 0.91292 0.82642 0.93481 1.21754 1.30585 0.95033 1.10428 0.92826 1.25883 0.97692 0.94638 1.01152 1.70062 1.43899 1.01504 1.41557 0.85361 0.78374 0.78482 0.78545 1.18988 1.19223 1.21024 1.22075 1.07196 0.92276 0.97723 1.23204 0.92249 1.00194 1.04201 1.23123 0.98429 0.93483 1.03929 0.84413 0.92703 0.91947 0.82525 0.93184 0.88286 0.88711 0.90628 0.91601 0.88547 0.95723 0.98949 0.92470 0.89540 0.86360 0.88612 0.88264 0.86360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.35 -6.18 8.51 -51.41 -0.44 -6.62 16 3 C 0.47 11.29 7.26 71.23 0.52 11.80 16 4 O -0.53 -16.88 15.40 21.94 0.34 -16.54 16 5 C 0.14 3.05 2.57 44.17 0.11 3.17 16 6 H 0.12 1.75 6.87 -2.39 -0.02 1.73 16 7 N -0.67 -20.61 5.42 -477.18 -2.59 -23.20 16 8 C 0.09 2.47 2.01 44.17 0.09 2.56 16 9 H 0.13 2.96 6.88 -2.39 -0.02 2.95 16 10 C -0.19 -3.73 8.78 71.98 0.63 -3.10 16 11 C 0.50 21.51 7.14 87.66 0.63 22.13 16 12 O -0.58 -32.64 16.01 -3.05 -0.05 -32.69 16 13 N -0.61 -26.06 2.86 -851.12 -2.43 -28.49 16 14 C 0.07 2.11 8.80 127.77 1.12 3.23 16 15 C 0.26 14.41 5.16 85.63 0.44 14.86 16 16 C -0.54 -31.84 9.39 25.60 0.24 -31.60 16 17 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 18 C 0.00 0.29 5.46 84.66 0.46 0.75 16 19 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 20 Si 0.97 45.92 29.54 68.60 2.03 47.94 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 24 C -0.17 -3.80 5.12 -10.79 -0.06 -3.86 16 25 C -0.16 -2.55 10.15 30.59 0.31 -2.24 16 26 C -0.15 -2.34 9.45 30.59 0.29 -2.05 16 27 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.83 8.13 -2.39 -0.02 0.81 16 29 H 0.06 0.83 8.13 -2.38 -0.02 0.81 16 30 H 0.35 11.60 7.19 -89.69 -0.64 10.95 16 31 H 0.05 1.17 8.13 -2.39 -0.02 1.15 16 32 H 0.10 1.71 4.54 -2.39 -0.01 1.70 16 33 H 0.09 1.24 7.43 -2.39 -0.02 1.23 16 34 H 0.08 1.72 6.95 -2.39 -0.02 1.70 16 35 H 0.07 1.98 8.07 -2.39 -0.02 1.96 16 36 H 0.10 1.96 6.01 -2.39 -0.01 1.95 16 37 H 0.02 1.37 8.07 -2.39 -0.02 1.35 16 38 H -0.01 -0.49 7.42 -2.38 -0.02 -0.51 16 39 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 40 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 41 H 0.12 1.31 8.05 -2.38 -0.02 1.29 16 42 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.12 1.50 6.84 -2.39 -0.02 1.49 16 Total: -1.00 -84.03 361.61 3.49 -80.54 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.36 Total: 19.17 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 5.99 Total: 17.21 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -4.73 Total: -109.01 kcal Atomic # 8 Polarization: -55.70 SS G_CDS: -0.15 Total: -55.85 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -84.03 3.49 -80.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348222515.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.095 kcal (2) G-P(sol) polarization free energy of solvation -84.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds