Wall clock time and date at job start Tue Mar 31 2020 04:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 116.99607 * 2 1 4 4 O 1.20824 * 120.00312 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99593 * 179.97438 * 3 2 1 6 6 H 1.08989 * 109.70260 * 6.04934 * 5 3 2 7 7 C 1.53199 * 109.58369 * 126.40395 * 5 3 2 8 8 C 1.53038 * 109.31191 * 174.42281 * 7 5 3 9 9 C 1.53041 * 109.53892 * 298.63511 * 8 7 5 10 10 C 1.53195 * 109.31478 * 61.36322 * 9 8 7 11 11 N 1.46922 * 109.58988 * 245.68965 * 5 3 2 12 12 C 1.34781 * 120.62921 * 6.88254 * 11 5 3 13 13 O 1.21285 * 120.00137 * 355.97225 * 12 11 5 14 14 C 1.50700 * 120.00046 * 175.97152 * 12 11 5 15 15 H 1.09000 * 109.47306 * 40.00072 * 14 12 11 16 16 N 1.46900 * 109.46926 * 160.00425 * 14 12 11 17 17 C 1.53005 * 109.46977 * 279.99735 * 14 12 11 18 18 C 1.53000 * 109.47071 * 174.99919 * 17 14 12 19 19 C 1.50692 * 109.47266 * 179.97438 * 18 17 14 20 20 H 1.08002 * 119.99955 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00339 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99695 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00309 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46838 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47048 * 120.00608 * 23 21 19 26 26 H 1.48498 * 109.47223 * 240.00628 * 23 21 19 27 27 H 1.09004 * 109.46924 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47368 * 299.99621 * 1 2 3 29 29 H 1.08995 * 109.47398 * 59.99994 * 1 2 3 30 30 H 1.08996 * 109.49546 * 54.46797 * 7 5 3 31 31 H 1.09002 * 109.52292 * 294.38668 * 7 5 3 32 32 H 1.08998 * 109.45881 * 178.61400 * 8 7 5 33 33 H 1.08999 * 109.45070 * 58.64838 * 8 7 5 34 34 H 1.08998 * 109.49402 * 301.41435 * 9 8 7 35 35 H 1.09001 * 109.49987 * 181.31858 * 9 8 7 36 36 H 1.08993 * 109.58930 * 185.57936 * 10 9 8 37 37 H 1.08998 * 109.69769 * 65.22190 * 10 9 8 38 38 H 1.00898 * 111.00667 * 59.99735 * 16 14 12 39 39 H 1.00906 * 110.99903 * 183.95290 * 16 14 12 40 40 H 1.08996 * 109.47441 * 295.00426 * 17 14 12 41 41 H 1.09003 * 109.46763 * 54.99965 * 17 14 12 42 42 H 1.08996 * 109.47402 * 300.00530 * 18 17 14 43 43 H 1.08995 * 109.46948 * 60.00285 * 18 17 14 44 44 H 0.97007 * 119.99763 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9866 0.2751 -0.1072 7 6 4.0347 2.1569 -1.1611 8 6 5.5507 2.3466 -1.0732 9 6 5.9034 3.0495 0.2397 10 6 5.4561 2.1776 1.4172 11 7 4.0279 1.8700 1.2621 12 6 3.1585 2.1236 2.2603 13 8 1.9727 1.9288 2.0959 14 6 3.6597 2.6494 3.5807 15 1 4.4468 3.3826 3.4046 16 7 2.5521 3.2847 4.3070 17 6 4.2173 1.4921 4.4118 18 6 4.8387 2.0408 5.6978 19 6 5.3873 0.9010 6.5168 20 1 5.3018 -0.1133 6.1559 21 6 5.9994 1.1531 7.7262 22 7 6.1040 2.3883 8.1654 23 14 6.6801 -0.2598 8.7411 24 1 6.4378 -1.5411 8.0307 25 1 8.1400 -0.0707 8.9362 26 1 6.0039 -0.2906 10.0628 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.5425 3.1277 -1.1022 31 1 3.7822 1.6778 -2.1071 32 1 5.8900 2.9535 -1.9126 33 1 6.0408 1.3736 -1.1072 34 1 5.3937 4.0119 0.2853 35 1 6.9810 3.2052 0.2909 36 1 5.6146 2.7161 2.3515 37 1 6.0304 1.2513 1.4274 38 1 1.8091 2.6250 4.4825 39 1 2.8758 3.7020 5.1669 40 1 3.4107 0.8035 4.6631 41 1 4.9786 0.9654 3.8364 42 1 5.6453 2.7294 5.4466 43 1 4.0774 2.5676 6.2731 44 1 6.5343 2.5657 9.0165 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424180530.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:26 Heat of formation + Delta-G solvation = -147.019319 kcal Electronic energy + Delta-G solvation = -25775.231652 eV Core-core repulsion = 22112.507015 eV Total energy + Delta-G solvation = -3662.724638 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.31887 -40.57756 -38.67135 -37.45845 -36.99856 -34.87937 -33.95675 -32.70683 -31.72014 -28.91839 -28.42675 -26.84704 -25.38750 -24.88101 -22.72778 -22.10056 -21.47599 -20.04415 -19.21302 -18.50863 -18.17883 -17.63592 -17.11746 -16.93699 -16.49224 -16.29934 -15.80377 -15.64974 -15.31381 -15.03892 -14.81655 -14.64886 -14.50135 -14.25632 -14.05005 -13.84318 -13.48259 -13.44273 -13.04031 -12.94579 -12.70595 -12.51227 -12.50003 -12.14701 -11.84320 -11.82616 -11.75270 -11.63448 -11.58638 -11.27833 -11.23356 -10.59391 -10.55546 -9.84104 -9.67939 -8.20852 -6.31072 1.07814 1.39516 1.41126 1.43643 1.53190 1.77524 1.97449 2.40712 3.13243 3.39021 3.64312 3.70723 3.77628 3.81418 3.96768 4.04625 4.08057 4.18134 4.20425 4.27847 4.34056 4.44631 4.62547 4.64600 4.65880 4.77535 4.83131 4.84406 5.01360 5.05374 5.11883 5.20168 5.35272 5.43892 5.46695 5.51494 5.63870 5.80325 5.96143 6.18783 6.21711 6.41079 6.81834 6.84112 7.05339 7.38301 8.90137 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.017633 B = 0.004020 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.573845 B = 6963.332005 C = 7585.390584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.370 6.370 3 C 0.471 3.529 4 O -0.526 6.526 5 C 0.150 3.850 6 H 0.126 0.874 7 C -0.118 4.118 8 C -0.109 4.109 9 C -0.135 4.135 10 C 0.097 3.903 11 N -0.600 5.600 12 C 0.516 3.484 13 O -0.547 6.547 14 C 0.087 3.913 15 H 0.110 0.890 16 N -0.832 5.832 17 C -0.118 4.118 18 C 0.032 3.968 19 C -0.542 4.542 20 H 0.055 0.945 21 C 0.007 3.993 22 N -0.926 5.926 23 Si 0.958 3.042 24 H -0.265 1.265 25 H -0.276 1.276 26 H -0.282 1.282 27 H 0.130 0.870 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.342 0.658 39 H 0.354 0.646 40 H 0.041 0.959 41 H 0.070 0.930 42 H 0.006 0.994 43 H -0.001 1.001 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.193 -3.218 -20.734 20.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.287 6.287 3 C 0.315 3.685 4 O -0.414 6.414 5 C 0.046 3.954 6 H 0.144 0.856 7 C -0.156 4.156 8 C -0.146 4.146 9 C -0.173 4.173 10 C -0.024 4.024 11 N -0.337 5.337 12 C 0.305 3.695 13 O -0.425 6.425 14 C -0.028 4.028 15 H 0.128 0.872 16 N -0.363 5.363 17 C -0.157 4.157 18 C -0.005 4.005 19 C -0.580 4.580 20 H 0.073 0.927 21 C -0.191 4.191 22 N -0.566 5.566 23 Si 0.783 3.217 24 H -0.189 1.189 25 H -0.201 1.201 26 H -0.208 1.208 27 H 0.148 0.852 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.155 0.845 39 H 0.169 0.831 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.024 0.976 43 H 0.018 0.982 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.063 -2.445 -21.326 21.492 hybrid contribution -0.035 -0.947 1.896 2.119 sum -1.098 -3.392 -19.430 19.755 Atomic orbital electron populations 1.23335 0.75323 1.04985 1.01678 1.86398 1.24663 1.33187 1.84424 1.23375 0.92121 0.81545 0.71446 1.90620 1.67510 1.37333 1.45976 1.21051 0.86580 1.01018 0.86734 0.85629 1.21916 0.98784 0.99079 0.95796 1.21522 0.92469 1.02732 0.97926 1.21975 1.03171 0.98273 0.93843 1.22235 0.77621 1.01654 1.00871 1.48163 1.10003 1.62959 1.12557 1.21047 0.85757 0.76609 0.86092 1.90661 1.17589 1.53392 1.80872 1.21399 0.94243 0.96906 0.90225 0.87207 1.58748 1.10857 1.37975 1.28769 1.22118 0.99741 0.96551 0.97322 1.18947 0.94635 0.95485 0.91418 1.21608 1.37551 0.94121 1.04727 0.92689 1.25834 0.96349 0.98033 0.98902 1.70069 1.44720 1.20595 1.21262 0.85503 0.78171 0.79618 0.78391 1.18947 1.20143 1.20790 0.85155 0.94061 0.91686 0.92554 0.88141 0.88967 0.89200 0.92533 0.87555 0.89307 0.88449 0.84506 0.83085 0.94057 0.91091 0.97605 0.98229 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.97 10.56 113.37 1.20 2.16 16 2 O -0.37 -10.80 10.56 -48.97 -0.52 -11.32 16 3 C 0.47 14.92 4.51 71.24 0.32 15.24 16 4 O -0.53 -20.52 14.28 29.82 0.43 -20.09 16 5 C 0.15 3.56 3.35 44.23 0.15 3.71 16 6 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 7 C -0.12 -2.07 5.29 30.67 0.16 -1.90 16 8 C -0.11 -1.27 5.88 30.62 0.18 -1.09 16 9 C -0.13 -1.97 6.08 30.67 0.19 -1.78 16 10 C 0.10 1.93 5.68 86.36 0.49 2.42 16 11 N -0.60 -16.14 2.97 -799.19 -2.38 -18.52 16 12 C 0.52 18.19 6.81 87.66 0.60 18.79 16 13 O -0.55 -22.94 11.80 23.06 0.27 -22.66 16 14 C 0.09 3.06 2.37 44.17 0.10 3.16 16 15 H 0.11 3.59 6.36 -2.39 -0.02 3.57 16 16 N -0.83 -30.66 8.94 -171.79 -1.54 -32.20 16 17 C -0.12 -4.59 4.63 30.60 0.14 -4.45 16 18 C 0.03 1.56 4.74 29.85 0.14 1.70 16 19 C -0.54 -29.29 9.11 25.60 0.23 -29.05 16 20 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 21 C 0.01 0.40 5.46 84.65 0.46 0.87 16 22 N -0.93 -53.67 13.29 21.45 0.28 -53.38 16 23 Si 0.96 42.76 29.54 68.60 2.03 44.78 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 27 H 0.13 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.04 1.19 8.13 -2.39 -0.02 1.18 16 29 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 30 H 0.06 1.30 7.86 -2.39 -0.02 1.28 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.99 5.37 -2.39 -0.01 1.97 16 37 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.34 12.97 8.58 -89.70 -0.77 12.20 16 39 H 0.35 12.95 7.55 -89.69 -0.68 12.27 16 40 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.07 2.56 7.50 -2.39 -0.02 2.55 16 42 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.00 -0.03 6.87 -2.39 -0.02 -0.05 16 44 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 Total: -1.00 -74.09 350.99 2.51 -71.58 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: -0.43 Total: 32.02 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 4.37 Total: 9.79 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -3.63 Total: -104.10 kcal Atomic # 8 Polarization: -54.25 SS G_CDS: 0.18 Total: -54.07 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -74.09 2.51 -71.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424180530.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.439 kcal (2) G-P(sol) polarization free energy of solvation -74.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds