Wall clock time and date at job start Tue Mar 31 2020 03:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00131 * 2 1 4 4 H 1.08995 * 110.53927 * 27.38613 * 3 2 1 5 5 C 1.54889 * 110.48277 * 264.77398 * 3 2 1 6 6 C 1.54895 * 102.74935 * 203.37475 * 5 3 2 7 7 C 1.54373 * 104.19419 * 37.97203 * 6 5 3 8 8 C 1.53880 * 106.54685 * 336.34949 * 7 6 5 9 9 H 1.09003 * 110.03049 * 119.34350 * 8 7 6 10 10 N 1.46495 * 110.03596 * 240.72871 * 8 7 6 11 11 C 1.34774 * 120.00304 * 272.91103 * 10 8 7 12 12 O 1.21588 * 119.99853 * 359.97438 * 11 10 8 13 13 N 1.34775 * 120.00028 * 179.97438 * 11 10 8 14 14 C 1.47021 * 125.64890 * 359.97438 * 13 11 10 15 15 C 1.54320 * 107.26896 * 178.96006 * 14 13 11 16 16 C 1.55160 * 102.94479 * 337.80345 * 15 14 13 17 17 O 1.42907 * 111.00103 * 277.39271 * 16 15 14 18 18 C 1.50701 * 111.00579 * 153.58191 * 16 15 14 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 16 15 20 20 C 1.37871 * 119.99694 * 180.27928 * 18 16 15 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 16 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 16 23 23 H 1.48504 * 109.47209 * 89.99886 * 22 20 18 24 24 H 1.48501 * 109.47358 * 209.99377 * 22 20 18 25 25 H 1.48496 * 109.47341 * 329.99989 * 22 20 18 26 26 C 1.47430 * 125.64611 * 179.97438 * 13 11 10 27 27 H 1.09003 * 109.46961 * 299.99802 * 1 2 3 28 28 H 1.09000 * 109.47082 * 60.00222 * 1 2 3 29 29 H 1.09001 * 109.47191 * 180.02562 * 1 2 3 30 30 H 1.08992 * 110.76137 * 321.69249 * 5 3 2 31 31 H 1.09004 * 110.75951 * 84.88052 * 5 3 2 32 32 H 1.09006 * 110.48464 * 156.62036 * 6 5 3 33 33 H 1.08998 * 110.49183 * 279.13657 * 6 5 3 34 34 H 1.09004 * 110.04555 * 217.08890 * 7 6 5 35 35 H 1.08997 * 110.07344 * 95.62491 * 7 6 5 36 36 H 0.97002 * 119.99559 * 92.90101 * 10 8 7 37 37 H 1.08994 * 109.88651 * 59.53765 * 14 13 11 38 38 H 1.09003 * 110.00877 * 298.44447 * 14 13 11 39 39 H 1.09006 * 110.72177 * 219.44041 * 15 14 13 40 40 H 1.09003 * 110.87744 * 96.23646 * 15 14 13 41 41 H 0.96702 * 113.99424 * 176.81865 * 17 16 15 42 42 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 43 43 H 1.08995 * 110.36529 * 85.27226 * 26 13 11 44 44 H 1.08998 * 110.36977 * 322.94896 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3379 2.0234 0.4695 5 6 2.3514 1.7468 -1.4449 6 6 3.4600 2.8062 -1.2260 7 6 4.2960 2.2432 -0.0566 8 6 3.3731 1.2897 0.7226 9 1 3.7873 0.2814 0.7165 10 7 3.2156 1.7589 2.1014 11 6 4.1035 1.3880 3.0451 12 8 5.0350 0.6636 2.7521 13 7 3.9588 1.8201 4.3134 14 6 2.8843 2.6961 4.8029 15 6 3.1122 2.8993 6.3156 16 6 3.9763 1.6708 6.7050 17 8 3.1590 0.5202 6.9291 18 6 4.8265 1.9694 7.9129 19 1 4.7761 2.9410 8.3819 20 6 5.6732 1.0044 8.4155 21 7 5.7349 -0.1786 7.8442 22 14 6.7328 1.3771 9.9080 23 1 5.9919 1.0169 11.1436 24 1 7.9872 0.5857 9.8347 25 1 7.0617 2.8250 9.9326 26 6 4.8519 1.4927 5.4398 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 2.7298 0.9062 -2.0265 31 1 1.4810 2.1891 -1.9295 32 1 4.0748 2.9055 -2.1207 33 1 3.0217 3.7671 -0.9567 34 1 4.6266 3.0551 0.5912 35 1 5.1575 1.6975 -0.4414 36 1 2.4723 2.3367 2.3351 37 1 1.9160 2.2251 4.6339 38 1 2.9235 3.6570 4.2898 39 1 2.1640 2.8899 6.8532 40 1 3.6525 3.8267 6.5059 41 1 3.6580 -0.2840 7.1275 42 1 6.3309 -0.8574 8.1976 43 1 5.6983 2.1790 5.4647 44 1 5.1997 0.4627 5.3612 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592031922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:46 Heat of formation + Delta-G solvation = -126.126105 kcal Electronic energy + Delta-G solvation = -25384.339673 eV Core-core repulsion = 21722.521033 eV Total energy + Delta-G solvation = -3661.818640 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.02690 -38.85363 -37.27825 -36.09840 -34.20218 -33.21809 -32.12547 -30.09078 -28.46075 -28.04160 -27.41141 -26.07814 -24.77175 -22.60575 -21.18078 -20.45905 -19.59023 -19.33958 -17.66335 -17.09716 -17.01406 -16.25299 -15.38596 -15.17055 -15.03497 -14.82214 -14.61092 -14.33846 -13.85325 -13.60668 -13.29324 -13.03209 -12.82000 -12.63252 -12.28882 -11.99646 -11.86824 -11.59058 -11.52384 -11.38463 -11.27638 -11.02742 -10.84244 -10.79810 -10.64554 -10.56826 -10.44235 -10.15903 -9.83139 -9.55113 -9.37282 -8.76179 -8.65499 -8.32875 -7.64943 -6.26096 -4.35510 3.08243 3.22895 3.30065 3.32333 3.62236 3.78542 4.26930 4.32148 4.44466 4.62289 4.77334 4.95768 5.01058 5.13684 5.15468 5.32095 5.34624 5.42948 5.45193 5.49510 5.54484 5.66038 5.67652 5.79497 5.82578 5.94245 6.04644 6.09187 6.12158 6.21700 6.52936 6.72763 6.83732 6.89491 6.99340 7.07003 7.25398 7.35129 7.66864 7.77367 8.04532 8.57371 8.68618 9.18867 9.34071 9.49019 10.81436 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.027097 B = 0.003494 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.059032 B = 8012.056047 C = 8270.282146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.078 3.922 4 H 0.071 0.929 5 C -0.141 4.141 6 C -0.122 4.122 7 C -0.132 4.132 8 C 0.162 3.838 9 H 0.101 0.899 10 N -0.745 5.745 11 C 0.718 3.282 12 O -0.595 6.595 13 N -0.628 5.628 14 C 0.106 3.894 15 C -0.116 4.116 16 C 0.249 3.751 17 O -0.584 6.584 18 C -0.538 4.538 19 H 0.067 0.933 20 C 0.071 3.929 21 N -0.894 5.894 22 Si 0.904 3.096 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.112 3.888 27 H 0.042 0.958 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.390 0.610 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.385 0.615 42 H 0.271 0.729 43 H 0.056 0.944 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.193 6.129 -15.649 19.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.295 6.295 3 C 0.019 3.981 4 H 0.089 0.911 5 C -0.180 4.180 6 C -0.159 4.159 7 C -0.171 4.171 8 C 0.056 3.944 9 H 0.119 0.881 10 N -0.401 5.401 11 C 0.420 3.580 12 O -0.473 6.473 13 N -0.364 5.364 14 C -0.017 4.017 15 C -0.154 4.154 16 C 0.208 3.792 17 O -0.394 6.394 18 C -0.576 4.576 19 H 0.085 0.915 20 C -0.132 4.132 21 N -0.533 5.533 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.010 4.010 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.223 0.777 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.237 0.763 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.744 5.629 -16.016 19.096 hybrid contribution 0.435 0.265 0.987 1.110 sum -8.309 5.894 -15.029 18.156 Atomic orbital electron populations 1.22789 0.81105 1.02866 0.99763 1.87974 1.19592 1.27028 1.94863 1.23272 0.94369 0.84939 0.95538 0.91132 1.22902 0.99058 0.99547 0.96456 1.22307 0.96951 0.98019 0.98671 1.22566 0.98343 0.99367 0.96851 1.21349 0.93455 0.99787 0.79792 0.88060 1.45232 1.30945 1.55684 1.08239 1.15504 0.82480 0.80359 0.79687 1.90882 1.34091 1.41883 1.80468 1.47897 1.30035 1.51409 1.07104 1.21896 0.90562 0.92528 0.96733 1.22594 1.01220 0.99536 0.92085 1.19605 0.86217 0.82873 0.90489 1.86065 1.38709 1.21438 1.93185 1.21488 1.23246 1.00013 1.12878 0.91520 1.25075 0.96173 0.94859 0.97080 1.69578 1.38748 1.04339 1.40613 0.86394 0.79554 0.78523 0.82365 1.20409 1.20988 1.19711 1.23147 0.92508 1.01570 0.83777 0.93956 0.94210 0.89596 0.90084 0.91256 0.91171 0.91493 0.90820 0.90682 0.77652 0.92799 0.93262 0.90817 0.90499 0.76270 0.91884 0.92525 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.85 101.05 1.10 1.38 16 2 O -0.38 -4.75 10.41 -35.23 -0.37 -5.11 16 3 C 0.08 0.85 3.05 -25.07 -0.08 0.78 16 4 H 0.07 0.68 7.41 -51.93 -0.38 0.29 16 5 C -0.14 -1.25 6.62 -24.74 -0.16 -1.41 16 6 C -0.12 -1.06 6.83 -25.01 -0.17 -1.23 16 7 C -0.13 -1.58 6.60 -25.55 -0.17 -1.75 16 8 C 0.16 2.26 2.99 -66.81 -0.20 2.06 16 9 H 0.10 1.73 7.51 -51.93 -0.39 1.34 16 10 N -0.74 -11.66 4.95 -57.58 -0.28 -11.94 16 11 C 0.72 14.98 8.48 -86.92 -0.74 14.24 16 12 O -0.59 -14.75 16.27 5.29 0.09 -14.67 16 13 N -0.63 -13.24 3.33 -176.25 -0.59 -13.83 16 14 C 0.11 1.86 6.15 -3.07 -0.02 1.85 16 15 C -0.12 -2.30 6.13 -24.90 -0.15 -2.45 16 16 C 0.25 6.08 0.88 -89.63 -0.08 6.00 16 17 O -0.58 -15.21 13.16 -35.23 -0.46 -15.67 16 18 C -0.54 -14.04 8.25 -34.44 -0.28 -14.33 16 19 H 0.07 1.69 7.76 -52.49 -0.41 1.29 16 20 C 0.07 1.87 5.31 -17.82 -0.09 1.77 16 21 N -0.89 -24.14 10.73 55.43 0.59 -23.54 16 22 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 C 0.11 2.75 5.62 -2.54 -0.01 2.73 16 27 H 0.04 0.36 8.11 -51.93 -0.42 -0.06 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.95 7.92 -51.93 -0.41 0.54 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.39 5.11 7.33 -40.82 -0.30 4.81 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.08 1.42 8.01 -51.93 -0.42 1.01 16 41 H 0.39 10.44 7.02 45.56 0.32 10.76 16 42 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.06 1.42 8.03 -51.93 -0.42 1.00 16 44 H 0.08 2.24 7.63 -51.93 -0.40 1.85 16 LS Contribution 353.92 15.07 5.33 5.33 Total: -1.00 -31.09 353.92 -8.36 -39.44 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -6.59 Total: 14.93 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -1.06 Total: 9.65 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.28 Total: -49.31 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -0.74 Total: -35.45 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.09 -8.36 -39.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592031922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.682 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds