Wall clock time and date at job start Tue Mar 31 2020 04:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00228 * 2 1 4 4 H 1.08999 * 109.46762 * 30.00156 * 3 2 1 5 5 C 1.50693 * 109.47051 * 270.00298 * 3 2 1 6 6 O 1.21281 * 120.00120 * 347.20476 * 5 3 2 7 7 N 1.34782 * 120.00349 * 167.20687 * 5 3 2 8 8 C 1.46964 * 120.59742 * 184.53267 * 7 5 3 9 9 C 1.53817 * 108.39556 * 124.75888 * 8 7 5 10 10 N 1.46966 * 108.57789 * 49.63832 * 9 8 7 11 11 C 1.36939 * 120.59073 * 124.66451 * 10 9 8 12 12 H 1.08005 * 119.99628 * 209.66188 * 11 10 9 13 13 C 1.38807 * 120.00012 * 29.66736 * 11 10 9 14 14 N 1.31619 * 120.00109 * 12.14615 * 13 11 10 15 15 Si 1.86800 * 120.00071 * 192.14067 * 13 11 10 16 16 H 1.48502 * 109.46929 * 60.00363 * 15 13 11 17 17 H 1.48499 * 109.47143 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47237 * 300.00159 * 15 13 11 19 19 C 1.46970 * 118.81302 * 304.64719 * 10 9 8 20 20 C 1.46964 * 120.58893 * 4.82064 * 7 5 3 21 21 C 1.53001 * 109.47020 * 150.00024 * 3 2 1 22 22 H 1.09001 * 110.74577 * 177.84419 * 21 3 2 23 23 C 1.55303 * 110.84945 * 301.31535 * 21 3 2 24 24 C 1.55204 * 100.82483 * 152.18022 * 23 21 3 25 25 O 1.43640 * 105.26006 * 323.81462 * 24 23 21 26 26 C 1.43238 * 109.97258 * 24.28703 * 25 24 23 27 27 H 1.09001 * 109.47301 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46776 * 300.00082 * 1 2 3 29 29 H 1.09000 * 109.47126 * 59.99561 * 1 2 3 30 30 H 1.08994 * 109.61301 * 244.54197 * 8 7 5 31 31 H 1.09001 * 109.60665 * 5.05793 * 8 7 5 32 32 H 1.09006 * 109.73984 * 289.85347 * 9 8 7 33 33 H 1.08997 * 109.53148 * 169.30171 * 9 8 7 34 34 H 0.97002 * 120.00404 * 180.02562 * 14 13 11 35 35 H 1.08997 * 109.60771 * 295.48319 * 19 10 9 36 36 H 1.09004 * 109.60794 * 174.96937 * 19 10 9 37 37 H 1.09001 * 109.61349 * 354.94243 * 20 7 5 38 38 H 1.08997 * 109.61213 * 115.28907 * 20 7 5 39 39 H 1.09005 * 111.12132 * 270.24234 * 23 21 3 40 40 H 1.08995 * 111.12302 * 34.40325 * 23 21 3 41 41 H 1.09001 * 110.36810 * 204.79480 * 24 23 21 42 42 H 1.09002 * 110.20809 * 82.75340 * 24 23 21 43 43 H 1.08991 * 109.83112 * 238.77144 * 26 25 24 44 44 H 1.09004 * 109.82999 * 117.79654 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2145 1.7643 -1.4208 6 8 2.1164 0.9722 -2.3339 7 7 2.5063 3.0550 -1.6768 8 6 2.6105 3.5381 -3.0609 9 6 1.6499 4.7270 -3.2336 10 7 1.8757 5.6751 -2.1336 11 6 2.1723 6.9864 -2.3937 12 1 2.7816 7.5496 -1.7023 13 6 1.6898 7.5918 -3.5458 14 7 0.7615 6.9953 -4.2634 15 14 2.3577 9.2532 -4.0779 16 1 3.8199 9.1461 -4.3144 17 1 1.6832 9.6798 -5.3302 18 1 2.1006 10.2545 -3.0119 19 6 1.7772 5.1907 -0.7495 20 6 2.7323 4.0031 -0.5768 21 6 3.3590 1.2632 0.7213 22 1 3.8389 2.2416 0.7003 23 6 3.1895 0.7618 2.1813 24 6 4.5815 0.1235 2.4338 25 8 4.9584 -0.4694 1.1809 26 6 4.2782 0.1869 0.1047 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 3.6329 3.8585 -3.2606 31 1 2.3337 2.7392 -3.7489 32 1 0.6188 4.3742 -3.2066 33 1 1.8462 5.2186 -4.1864 34 1 0.4245 7.4181 -5.0687 35 1 0.7553 4.8710 -0.5458 36 1 2.0575 5.9887 -0.0619 37 1 2.5360 3.5115 0.3761 38 1 3.7640 4.3535 -0.6020 39 1 3.0051 1.5923 2.8629 40 1 2.3981 0.0156 2.2510 41 1 4.5138 -0.6401 3.2087 42 1 5.3009 0.8904 2.7210 43 1 3.6805 -0.5359 -0.4505 44 1 5.0037 0.6567 -0.5594 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597272772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:39 Heat of formation + Delta-G solvation = -88.059871 kcal Electronic energy + Delta-G solvation = -26048.535365 eV Core-core repulsion = 22388.367400 eV Total energy + Delta-G solvation = -3660.167964 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.58372 -38.96873 -37.60284 -36.53892 -34.12355 -32.97568 -31.24938 -30.58538 -29.72028 -27.50808 -26.87543 -25.78376 -23.77295 -22.86028 -22.58969 -21.27945 -20.31627 -18.88908 -17.46723 -17.16925 -16.60716 -16.31290 -15.99437 -15.27536 -14.96586 -14.86001 -14.73179 -14.44179 -14.04057 -13.72881 -13.51399 -13.43152 -13.31265 -13.13825 -12.82968 -12.41601 -11.98815 -11.82160 -11.61825 -11.42490 -11.22451 -10.99428 -10.92967 -10.82939 -10.77067 -10.66347 -10.45234 -10.29764 -10.03708 -9.92796 -9.54762 -9.03452 -8.64727 -8.31525 -6.76144 -5.89497 -3.39325 2.81554 3.16002 3.31159 3.37530 3.37849 3.65833 3.81422 4.16680 4.38088 4.46667 4.73310 4.74618 4.99100 5.02891 5.07228 5.20261 5.21820 5.27677 5.28757 5.42073 5.54633 5.56509 5.63612 5.64480 5.66837 5.74506 5.78381 5.86533 6.06059 6.10045 6.26595 6.31034 6.41896 6.59150 6.75386 6.90241 6.93181 7.20702 7.53054 7.65422 7.81211 8.31860 8.47369 9.06729 9.67988 10.24504 11.17242 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.024571 B = 0.003966 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.280257 B = 7057.979846 C = 7481.675021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.085 3.915 4 H 0.089 0.911 5 C 0.485 3.515 6 O -0.536 6.536 7 N -0.594 5.594 8 C 0.085 3.915 9 C 0.158 3.842 10 N -0.590 5.590 11 C -0.259 4.259 12 H 0.067 0.933 13 C 0.006 3.994 14 N -0.904 5.904 15 Si 0.908 3.092 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.282 1.282 19 C 0.131 3.869 20 C 0.083 3.917 21 C -0.120 4.120 22 H 0.105 0.895 23 C -0.148 4.148 24 C 0.052 3.948 25 O -0.384 6.384 26 C 0.061 3.939 27 H 0.089 0.911 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.022 0.978 33 H 0.105 0.895 34 H 0.257 0.743 35 H 0.022 0.978 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.087 0.913 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.835 -10.527 12.973 16.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.023 3.977 4 H 0.106 0.894 5 C 0.272 3.728 6 O -0.413 6.413 7 N -0.328 5.328 8 C -0.038 4.038 9 C 0.032 3.968 10 N -0.313 5.313 11 C -0.388 4.388 12 H 0.085 0.915 13 C -0.193 4.193 14 N -0.548 5.548 15 Si 0.737 3.263 16 H -0.209 1.209 17 H -0.215 1.215 18 H -0.208 1.208 19 C 0.003 3.997 20 C -0.042 4.042 21 C -0.139 4.139 22 H 0.123 0.877 23 C -0.185 4.185 24 C -0.024 4.024 25 O -0.303 6.303 26 C -0.016 4.016 27 H 0.108 0.892 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.040 0.960 33 H 0.123 0.877 34 H 0.067 0.933 35 H 0.040 0.960 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.105 0.895 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.934 -11.203 12.286 16.884 hybrid contribution -0.168 1.480 -0.316 1.522 sum 2.766 -9.724 11.970 15.668 Atomic orbital electron populations 1.22862 0.80543 1.03079 1.00235 1.87944 1.20008 1.24808 1.94461 1.21837 0.95836 0.86747 0.93260 0.89367 1.21097 0.77916 0.82309 0.91522 1.90670 1.51374 1.52850 1.46438 1.48138 1.68234 1.07822 1.08634 1.22655 1.01394 0.98721 0.81006 1.21338 0.93870 0.86988 0.94602 1.43963 1.82163 1.06412 0.98787 1.19152 1.25554 0.86991 1.07133 0.91538 1.25144 0.96418 0.98054 0.99724 1.69942 1.28150 1.39146 1.17519 0.86296 0.78543 0.83554 0.77884 1.20870 1.21522 1.20807 1.21282 0.95339 0.93793 0.89270 1.22525 1.01312 0.92022 0.88317 1.22954 0.94143 1.01367 0.95460 0.87711 1.23339 0.98836 1.01546 0.94811 1.23367 0.94358 0.97389 0.87296 1.88390 1.68079 1.59055 1.14798 1.23120 0.94195 0.94602 0.89653 0.89228 0.93955 0.93539 0.92099 0.90187 0.95976 0.87734 0.93300 0.95983 0.91395 0.91059 0.91266 0.89666 0.89284 0.89813 0.92278 0.89479 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.81 101.05 1.09 1.42 16 2 O -0.36 -4.93 8.04 -54.81 -0.44 -5.37 16 3 C 0.08 1.13 1.46 -27.89 -0.04 1.09 16 4 H 0.09 1.03 6.89 -51.93 -0.36 0.67 16 5 C 0.49 8.36 6.52 -10.99 -0.07 8.29 16 6 O -0.54 -11.12 15.97 -14.02 -0.22 -11.34 16 7 N -0.59 -10.42 2.94 -172.21 -0.51 -10.92 16 8 C 0.09 1.70 6.61 -3.36 -0.02 1.67 16 9 C 0.16 3.69 5.50 -3.36 -0.02 3.67 16 10 N -0.59 -13.91 2.97 -171.75 -0.51 -14.42 16 11 C -0.26 -6.69 9.59 -15.06 -0.14 -6.84 16 12 H 0.07 1.66 7.86 -52.48 -0.41 1.25 16 13 C 0.01 0.15 5.03 -17.43 -0.09 0.06 16 14 N -0.90 -25.26 10.97 55.49 0.61 -24.65 16 15 Si 0.91 20.82 29.57 -169.99 -5.03 15.79 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 19 C 0.13 2.44 6.67 -3.59 -0.02 2.42 16 20 C 0.08 1.26 5.48 -3.60 -0.02 1.24 16 21 C -0.12 -1.38 2.43 -88.68 -0.22 -1.60 16 22 H 0.10 1.11 6.06 -51.93 -0.31 0.80 16 23 C -0.15 -1.34 6.58 -24.34 -0.16 -1.50 16 24 C 0.05 0.51 7.78 38.32 0.30 0.80 16 25 O -0.38 -5.18 11.36 -35.23 -0.40 -5.58 16 26 C 0.06 0.82 6.82 37.88 0.26 1.08 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.08 1.61 7.02 -51.93 -0.36 1.25 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 2.71 5.92 -51.93 -0.31 2.40 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 37 H 0.07 0.83 4.64 -51.93 -0.24 0.59 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.85 7.38 -51.93 -0.38 0.46 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.09 1.36 7.04 -51.93 -0.37 0.99 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 342.98 15.07 5.17 5.17 Total: -1.00 -31.49 342.98 -7.43 -38.92 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.94 Total: 0.58 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 0.84 Total: 11.82 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.41 Total: -49.99 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -1.06 Total: -22.29 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.49 -7.43 -38.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597272772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.142 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds