Wall clock time and date at job start Tue Mar 31 2020 03:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46546 * 2 1 4 4 C 1.50697 * 109.47100 * 119.99438 * 2 1 3 5 5 O 1.20826 * 119.99964 * 105.06299 * 4 2 1 6 6 O 1.34233 * 120.00563 * 285.06326 * 4 2 1 7 7 C 1.45195 * 117.00229 * 179.97438 * 6 4 2 8 8 C 1.50702 * 109.47253 * 179.97438 * 7 6 4 9 9 O 1.21296 * 119.99607 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00291 * 180.02562 * 8 7 6 11 11 C 1.37094 * 120.00179 * 180.02562 * 10 8 7 12 12 H 1.08006 * 119.99813 * 0.02562 * 11 10 8 13 13 C 1.38942 * 120.00166 * 179.97438 * 11 10 8 14 14 N 1.31409 * 120.00279 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00137 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46917 * 90.00276 * 15 13 11 17 17 H 1.48499 * 109.47108 * 209.99918 * 15 13 11 18 18 H 1.48501 * 109.47272 * 330.00360 * 15 13 11 19 19 N 1.46891 * 109.47010 * 239.99728 * 2 1 3 20 20 C 1.48003 * 111.00153 * 80.02451 * 19 2 1 21 21 C 1.50445 * 112.82740 * 191.34502 * 20 19 2 22 22 C 1.54309 * 108.50145 * 93.73046 * 21 20 19 23 23 C 1.45884 * 112.18185 * 281.46113 * 22 21 20 24 24 C 1.54315 * 112.18289 * 61.12079 * 23 22 21 25 25 C 1.48007 * 111.00316 * 311.30663 * 19 2 1 26 26 H 1.09003 * 109.47008 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47035 * 300.00138 * 1 2 3 28 28 H 1.08994 * 109.47430 * 60.00233 * 1 2 3 29 29 H 1.08998 * 109.47147 * 300.00318 * 7 6 4 30 30 H 1.08997 * 109.46955 * 60.00310 * 7 6 4 31 31 H 0.96997 * 119.99730 * 359.97438 * 10 8 7 32 32 H 0.97002 * 120.00860 * 179.97438 * 14 13 11 33 33 H 1.08998 * 108.80786 * 312.20857 * 20 19 2 34 34 H 1.09004 * 108.81182 * 70.47792 * 20 19 2 35 35 H 1.08994 * 109.63569 * 334.02445 * 21 20 19 36 36 H 1.08999 * 109.62840 * 213.43119 * 21 20 19 37 37 H 1.08994 * 108.94117 * 160.76479 * 22 21 20 38 38 H 1.09002 * 108.94016 * 42.15361 * 22 21 20 39 39 H 1.08993 * 108.93843 * 300.42656 * 23 22 21 40 40 H 1.09004 * 108.93809 * 181.81645 * 23 22 21 41 41 H 1.09003 * 109.63205 * 161.76095 * 24 23 22 42 42 H 1.09003 * 109.63421 * 41.16480 * 24 23 22 43 43 H 1.08999 * 108.80943 * 205.70798 * 25 19 2 44 44 H 1.08998 * 108.80486 * 323.97232 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.4901 -1.8248 1.1402 6 8 1.9713 -0.1048 2.4270 7 6 2.4727 -0.8488 3.5686 8 6 2.3242 -0.0158 4.8156 9 8 1.8427 1.0955 4.7488 10 7 2.7265 -0.5054 6.0051 11 6 2.5909 0.2522 7.1396 12 1 2.1613 1.2414 7.0802 13 6 3.0051 -0.2528 8.3659 14 7 3.5273 -1.4565 8.4383 15 14 2.8210 0.7798 9.9117 16 1 1.4972 0.5139 10.5298 17 1 3.8961 0.4272 10.8734 18 1 2.9233 2.2191 9.5606 19 7 2.0197 -0.6925 -1.1993 20 6 1.9708 0.1960 -2.3820 21 6 2.2009 -0.5392 -3.6742 22 6 0.8306 -0.9354 -4.2629 23 6 0.2661 -2.1079 -3.6034 24 6 0.0226 -1.8692 -2.0985 25 6 1.3366 -1.9935 -1.3767 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.9045 -1.7724 3.6784 30 1 3.5253 -1.0860 3.4138 31 1 3.1112 -1.3942 6.0585 32 1 3.8169 -1.8091 9.2943 33 1 0.9933 0.6767 -2.4202 34 1 2.7348 0.9661 -2.2748 35 1 2.7914 -1.4356 -3.4855 36 1 2.7271 0.1086 -4.3753 37 1 0.9504 -1.1501 -5.3247 38 1 0.1411 -0.0989 -4.1483 39 1 0.9533 -2.9456 -3.7220 40 1 -0.6815 -2.3597 -4.0797 41 1 -0.6762 -2.6142 -1.7179 42 1 -0.3851 -0.8696 -1.9475 43 1 1.9880 -2.6579 -1.9443 44 1 1.1585 -2.4335 -0.3955 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741027628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:52 Heat of formation + Delta-G solvation = -114.267127 kcal Electronic energy + Delta-G solvation = -24687.579493 eV Core-core repulsion = 21026.275097 eV Total energy + Delta-G solvation = -3661.304396 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.80296 -39.43147 -38.06036 -36.13422 -35.14767 -33.98113 -32.53684 -31.37371 -30.77431 -28.32001 -27.05346 -25.25923 -24.82048 -23.69009 -20.91466 -20.59401 -19.67347 -19.50868 -18.05327 -17.62236 -16.54744 -16.37884 -16.10929 -15.92035 -15.40188 -14.90555 -14.51316 -14.28630 -14.10095 -13.91963 -13.76565 -13.37426 -13.28446 -12.93105 -12.52356 -12.43355 -12.28430 -12.10711 -12.01569 -11.68342 -11.60860 -11.45987 -11.12004 -10.94540 -10.86325 -10.72728 -10.51330 -10.43230 -10.31874 -10.28578 -9.97452 -9.59024 -8.50245 -8.39272 -8.06691 -6.48469 -3.90500 2.39859 2.62393 3.14255 3.24165 3.30266 3.70330 3.76174 4.12793 4.34525 4.44794 4.58449 4.70954 4.77899 4.85818 4.92392 4.97466 5.09920 5.14504 5.16766 5.18744 5.33458 5.39887 5.46463 5.57372 5.60921 5.63545 5.69152 5.72753 5.73987 5.82438 5.83832 5.90301 5.98049 6.05599 6.08665 6.16957 6.68340 6.82377 6.95861 7.49078 7.91938 8.03978 8.50559 9.08686 9.41316 9.91412 10.68826 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.046778 B = 0.002541 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.425194 B =11018.058194 C =11159.634316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.097 3.903 3 H 0.116 0.884 4 C 0.464 3.536 5 O -0.499 6.499 6 O -0.327 6.327 7 C 0.062 3.938 8 C 0.439 3.561 9 O -0.576 6.576 10 N -0.553 5.553 11 C -0.302 4.302 12 H 0.106 0.894 13 C 0.024 3.976 14 N -0.898 5.898 15 Si 0.934 3.066 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.268 1.268 19 N -0.534 5.534 20 C 0.064 3.936 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.162 4.162 25 C 0.058 3.942 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.395 0.605 32 H 0.274 0.726 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.059 -1.328 -23.161 23.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.013 4.013 3 H 0.134 0.866 4 C 0.305 3.695 5 O -0.386 6.386 6 O -0.241 6.241 7 C -0.016 4.016 8 C 0.224 3.776 9 O -0.460 6.460 10 N -0.191 5.191 11 C -0.431 4.431 12 H 0.124 0.876 13 C -0.178 4.178 14 N -0.538 5.538 15 Si 0.760 3.240 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.193 1.193 19 N -0.259 5.259 20 C -0.062 4.062 21 C -0.159 4.159 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.201 4.201 25 C -0.069 4.069 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.228 0.772 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.680 -1.126 -22.967 23.465 hybrid contribution -0.525 -0.170 0.778 0.954 sum -5.205 -1.296 -22.189 22.828 Atomic orbital electron populations 1.22616 0.94193 1.03573 1.03753 1.21073 0.94758 0.98640 0.86859 0.86582 1.23489 0.75822 0.85258 0.84886 1.90612 1.41729 1.19889 1.86354 1.86535 1.75153 1.47014 1.15447 1.22713 1.00289 0.94691 0.83885 1.19342 0.86002 0.88347 0.83915 1.90558 1.48989 1.20683 1.85809 1.41707 1.54315 1.17852 1.05212 1.19720 1.39048 1.00532 0.83791 0.87638 1.25309 0.96549 0.96430 0.99509 1.69612 1.41080 1.16037 1.27096 0.85801 0.77935 0.79889 0.80339 1.20280 1.20817 1.19281 1.61551 1.57876 1.04514 1.01941 1.21801 1.00620 0.94867 0.88909 1.21425 0.97311 1.01508 0.95610 1.20606 0.96776 0.98646 0.99738 1.20574 1.00790 0.98597 0.95683 1.22359 0.99038 1.03040 0.95640 1.21954 0.92788 0.90373 1.01746 0.91108 0.90339 0.90895 0.89708 0.89573 0.77163 0.91641 0.94332 0.90791 0.90439 0.90937 0.92193 0.92326 0.92020 0.92487 0.91341 0.90548 0.90696 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 7.48 37.16 0.28 -1.59 16 2 C 0.10 1.17 2.77 -68.87 -0.19 0.98 16 3 H 0.12 1.29 7.94 -51.93 -0.41 0.88 16 4 C 0.46 7.48 6.96 36.00 0.25 7.73 16 5 O -0.50 -8.84 14.19 -18.75 -0.27 -9.11 16 6 O -0.33 -6.18 9.75 -45.91 -0.45 -6.63 16 7 C 0.06 1.20 5.94 36.01 0.21 1.42 16 8 C 0.44 10.70 7.86 -10.99 -0.09 10.62 16 9 O -0.58 -16.12 16.08 -14.12 -0.23 -16.35 16 10 N -0.55 -14.13 5.29 -10.96 -0.06 -14.19 16 11 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 12 H 0.11 3.05 7.16 -52.48 -0.38 2.68 16 13 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 14 N -0.90 -24.24 13.05 55.50 0.72 -23.51 16 15 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 N -0.53 -5.96 4.41 -229.31 -1.01 -6.97 16 20 C 0.06 0.55 4.81 -4.49 -0.02 0.53 16 21 C -0.12 -0.88 5.63 -27.32 -0.15 -1.04 16 22 C -0.12 -0.79 5.30 -29.41 -0.16 -0.95 16 23 C -0.12 -0.85 5.30 -29.41 -0.16 -1.01 16 24 C -0.16 -1.35 4.22 -27.32 -0.12 -1.46 16 25 C 0.06 0.62 4.12 -4.49 -0.02 0.60 16 26 H 0.07 0.73 5.65 -51.93 -0.29 0.43 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.60 5.81 -51.93 -0.30 0.30 16 29 H 0.08 1.50 8.13 -51.93 -0.42 1.08 16 30 H 0.09 1.55 8.13 -51.93 -0.42 1.13 16 31 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 32 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.04 0.30 5.39 -51.93 -0.28 0.02 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.66 7.08 -51.93 -0.37 0.29 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.38 7.52 -51.93 -0.39 -0.01 16 39 H 0.06 0.45 7.52 -51.93 -0.39 0.06 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.63 4.08 -51.93 -0.21 0.42 16 43 H 0.07 0.81 6.59 -51.93 -0.34 0.46 16 44 H 0.08 1.06 5.51 -51.93 -0.29 0.77 16 LS Contribution 340.78 15.07 5.14 5.14 Total: -1.00 -31.86 340.78 -8.06 -39.92 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.49 Total: 8.07 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -0.40 Total: 7.86 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.35 Total: -44.68 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.94 Total: -32.08 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.86 -8.06 -39.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741027628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.348 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds