Wall clock time and date at job start Tue Mar 31 2020 04:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00018 * 2 1 4 4 O 1.20826 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00046 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47212 * 179.97438 * 5 3 2 7 7 H 1.09004 * 109.47346 * 305.00026 * 6 5 3 8 8 N 1.46497 * 109.47195 * 64.99546 * 6 5 3 9 9 C 1.34774 * 120.00444 * 204.99889 * 8 6 5 10 10 O 1.21282 * 119.99907 * 0.02562 * 9 8 6 11 11 C 1.50696 * 120.00466 * 180.02562 * 9 8 6 12 12 H 1.09002 * 109.47046 * 40.00032 * 11 9 8 13 13 N 1.46897 * 109.47836 * 160.00356 * 11 9 8 14 14 C 1.53010 * 109.47226 * 280.00408 * 11 9 8 15 15 C 1.52997 * 109.47035 * 174.99761 * 14 11 9 16 16 C 1.50699 * 109.46640 * 179.97438 * 15 14 11 17 17 H 1.08002 * 120.00805 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99921 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00073 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00134 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47138 * 89.99899 * 20 18 16 22 22 H 1.48496 * 109.47158 * 210.00011 * 20 18 16 23 23 H 1.48496 * 109.47065 * 330.00095 * 20 18 16 24 24 C 1.52997 * 109.47504 * 184.99949 * 6 5 3 25 25 C 1.53002 * 117.50022 * 248.74910 * 24 6 5 26 26 C 1.52997 * 117.50076 * 180.08715 * 24 6 5 27 27 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47630 * 300.00318 * 1 2 3 29 29 H 1.08998 * 109.47321 * 60.00129 * 1 2 3 30 30 H 1.09002 * 109.47060 * 299.99765 * 5 3 2 31 31 H 1.09001 * 109.47380 * 59.99853 * 5 3 2 32 32 H 0.97001 * 119.99762 * 25.00311 * 8 6 5 33 33 H 1.00897 * 110.99797 * 59.99746 * 13 11 9 34 34 H 1.00902 * 111.00437 * 183.95804 * 13 11 9 35 35 H 1.08996 * 109.46970 * 294.99694 * 14 11 9 36 36 H 1.09001 * 109.46739 * 54.99442 * 14 11 9 37 37 H 1.08996 * 109.47187 * 299.99800 * 15 14 11 38 38 H 1.08995 * 109.47228 * 59.99995 * 15 14 11 39 39 H 0.96997 * 120.00320 * 179.97438 * 19 18 16 40 40 H 1.09003 * 115.54905 * 34.41348 * 24 6 5 41 41 H 1.09000 * 117.49650 * 359.97438 * 25 24 6 42 42 H 1.09001 * 117.49817 * 145.01411 * 25 24 6 43 43 H 1.08996 * 117.49862 * 214.97497 * 26 24 6 44 44 H 1.08996 * 117.50355 * 359.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 1 3.5375 3.2575 -0.8429 8 7 3.5792 3.3762 1.2506 9 6 3.3824 4.7086 1.2982 10 8 3.5533 5.3827 0.3046 11 6 2.9499 5.3610 2.5860 12 1 3.4808 4.9038 3.4210 13 7 3.2593 6.7962 2.5360 14 6 1.4434 5.1703 2.7736 15 6 1.0255 5.7224 4.1379 16 6 -0.4584 5.5351 4.3223 17 1 -1.0449 5.0693 3.5442 18 6 -1.0677 5.9593 5.4842 19 7 -0.3538 6.5269 6.4316 20 14 -2.9069 5.7265 5.7132 21 1 -3.1635 4.4110 6.3526 22 1 -3.4390 6.8097 6.5784 23 1 -3.5803 5.7736 4.3905 24 6 5.5226 2.8237 -0.1274 25 6 6.3067 3.3216 1.0885 26 6 6.1564 4.2161 -0.1445 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 3.9563 0.7806 0.8892 31 1 3.9557 0.7809 -0.8908 32 1 3.4421 2.8370 2.0453 33 1 2.7787 7.2432 1.7696 34 1 3.0380 7.2446 3.4124 35 1 0.9090 5.7029 1.9869 36 1 1.2024 4.1085 2.7218 37 1 1.5598 5.1898 4.9245 38 1 1.2665 6.7841 4.1896 39 1 -0.7824 6.8257 7.2489 40 1 5.9853 2.0525 -0.7433 41 1 5.7377 3.5913 1.9782 42 1 7.2853 2.8781 1.2723 43 1 7.0363 4.3609 -0.7713 44 1 5.4887 5.0741 -0.0663 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818158531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:56 Heat of formation + Delta-G solvation = -107.650466 kcal Electronic energy + Delta-G solvation = -25153.557013 eV Core-core repulsion = 21492.539537 eV Total energy + Delta-G solvation = -3661.017476 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.82233 -39.84504 -37.52626 -36.54132 -35.29836 -34.08739 -32.81254 -31.47746 -29.83098 -28.07505 -26.51854 -25.03717 -23.67640 -22.33333 -21.15607 -20.82783 -20.01922 -19.74108 -17.70593 -17.35591 -16.82590 -16.60635 -16.25439 -16.06190 -15.73764 -14.74459 -14.45365 -14.39236 -14.10352 -13.78822 -13.56909 -13.25053 -13.05729 -12.76206 -12.62945 -12.23920 -12.12600 -12.03245 -11.81772 -11.68238 -11.34433 -11.03493 -10.91188 -10.89245 -10.65919 -10.62022 -10.35365 -10.03586 -9.93113 -9.80552 -9.23481 -9.14652 -8.85420 -8.41501 -8.13031 -6.06153 -4.08667 2.10730 2.51862 3.01500 3.25357 3.27959 3.34660 3.38787 3.82698 4.32872 4.41441 4.51020 4.83523 4.91945 4.97544 4.99132 5.06086 5.09212 5.12047 5.21947 5.25539 5.30275 5.37806 5.44185 5.63218 5.71905 5.80294 5.85377 5.89826 6.13382 6.26827 6.36765 6.44120 6.60226 6.63104 6.94580 7.48018 7.55770 7.63609 7.65851 7.76221 7.91576 7.95370 8.35195 8.56709 8.97418 9.55911 11.04853 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.004527 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.204366 B = 6183.414233 C = 8003.260034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.450 3.550 4 O -0.483 6.483 5 C -0.118 4.118 6 C 0.189 3.811 7 H 0.099 0.901 8 N -0.723 5.723 9 C 0.535 3.465 10 O -0.533 6.533 11 C 0.075 3.925 12 H 0.093 0.907 13 N -0.830 5.830 14 C -0.134 4.134 15 C 0.025 3.975 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.175 4.175 25 C -0.173 4.173 26 C -0.179 4.179 27 H 0.099 0.901 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.112 0.888 31 H 0.119 0.881 32 H 0.398 0.602 33 H 0.345 0.655 34 H 0.353 0.647 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.017 0.983 38 H 0.017 0.983 39 H 0.261 0.739 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.599 -13.822 -12.302 21.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.282 6.282 3 C 0.291 3.709 4 O -0.368 6.368 5 C -0.156 4.156 6 C 0.084 3.916 7 H 0.117 0.883 8 N -0.375 5.375 9 C 0.323 3.677 10 O -0.409 6.409 11 C -0.040 4.040 12 H 0.111 0.889 13 N -0.362 5.362 14 C -0.174 4.174 15 C -0.012 4.012 16 C -0.560 4.560 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.194 4.194 25 C -0.211 4.211 26 C -0.215 4.215 27 H 0.118 0.882 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.130 0.870 31 H 0.137 0.863 32 H 0.232 0.768 33 H 0.158 0.842 34 H 0.168 0.832 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.071 0.929 40 H 0.127 0.873 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.218 -13.152 -12.969 21.610 hybrid contribution -2.373 -0.401 0.804 2.537 sum 8.845 -13.553 -12.165 20.246 Atomic orbital electron populations 1.23273 0.76048 1.03545 1.02974 1.86465 1.23676 1.33599 1.84457 1.23691 0.92093 0.81636 0.73459 1.90802 1.66831 1.35929 1.43223 1.21696 0.88174 0.98945 1.06820 1.20138 0.92031 0.90064 0.89401 0.88276 1.45918 1.70669 1.08340 1.12616 1.20728 0.74846 0.81421 0.90724 1.90556 1.50467 1.63034 1.36823 1.21457 0.97346 0.91120 0.94108 0.88908 1.58758 1.65998 1.01338 1.10086 1.22330 0.91708 1.01649 1.01685 1.19100 0.96408 0.96077 0.89661 1.21194 0.93371 1.39379 1.02013 0.92776 1.25003 0.98159 0.95127 0.95992 1.69948 1.35643 1.40578 1.07142 0.86597 0.85565 0.77785 0.78110 1.20659 1.21134 1.19894 1.22682 0.93622 0.99528 1.03593 1.22943 1.00728 1.04269 0.93127 1.23361 1.02841 0.94969 1.00357 0.88225 0.91456 0.91939 0.86963 0.86337 0.76766 0.84162 0.83176 0.92756 0.92607 0.96465 0.96445 0.92931 0.87295 0.88461 0.89326 0.89543 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -3.90 10.56 -39.26 -0.41 -4.31 16 3 C 0.45 5.26 7.82 36.01 0.28 5.54 16 4 O -0.48 -7.66 15.10 -18.75 -0.28 -7.94 16 5 C -0.12 -0.96 5.34 -27.88 -0.15 -1.11 16 6 C 0.19 2.10 2.00 -67.93 -0.14 1.96 16 7 H 0.10 1.39 7.39 -51.93 -0.38 1.00 16 8 N -0.72 -9.38 2.76 -53.81 -0.15 -9.53 16 9 C 0.54 8.88 5.91 -10.99 -0.06 8.81 16 10 O -0.53 -10.17 13.28 5.56 0.07 -10.10 16 11 C 0.07 1.31 3.21 -68.86 -0.22 1.09 16 12 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 13 N -0.83 -14.58 8.94 -5.65 -0.05 -14.63 16 14 C -0.13 -2.78 4.78 -26.73 -0.13 -2.90 16 15 C 0.02 0.61 4.74 -27.89 -0.13 0.48 16 16 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 20 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 C -0.17 -1.71 5.70 -90.62 -0.52 -2.23 16 25 C -0.17 -1.82 9.74 -26.69 -0.26 -2.08 16 26 C -0.18 -2.15 9.82 -26.69 -0.26 -2.41 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 29 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.12 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.40 4.56 8.60 -40.82 -0.35 4.21 16 33 H 0.35 6.22 8.58 -39.29 -0.34 5.89 16 34 H 0.35 6.25 7.55 -39.29 -0.30 5.95 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.11 0.81 8.11 -51.93 -0.42 0.39 16 41 H 0.10 1.13 6.67 -51.93 -0.35 0.79 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.12 1.91 5.02 -51.93 -0.26 1.65 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -33.67 363.36 -7.51 -41.18 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -6.94 Total: 13.77 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -0.93 Total: -4.87 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.54 Total: -49.80 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.62 Total: -22.36 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.67 -7.51 -41.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818158531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.473 kcal (2) G-P(sol) polarization free energy of solvation -33.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds