Wall clock time and date at job start Tue Mar 31 2020 03:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46913 * 2 1 4 4 C 1.34776 * 119.99920 * 84.45113 * 3 2 1 5 5 O 1.21273 * 120.00330 * 4.15210 * 4 3 2 6 6 C 1.50703 * 119.99542 * 184.15221 * 4 3 2 7 7 H 1.08996 * 109.52787 * 305.45110 * 6 4 3 8 8 C 1.53150 * 109.52483 * 65.58288 * 6 4 3 9 9 O 1.43076 * 109.15148 * 175.21165 * 8 6 4 10 10 C 1.43074 * 113.59157 * 302.05055 * 9 8 6 11 11 C 1.53142 * 109.15582 * 57.95108 * 10 9 8 12 12 O 1.43076 * 109.14992 * 304.68878 * 11 10 9 13 13 C 1.46499 * 120.00013 * 264.44705 * 3 2 1 14 14 H 1.08993 * 110.64235 * 181.93601 * 13 3 2 15 15 C 1.55158 * 110.71947 * 58.59446 * 13 3 2 16 16 C 1.54911 * 101.58451 * 277.14071 * 15 13 3 17 17 N 1.47425 * 104.83115 * 322.98965 * 16 15 13 18 18 C 1.36935 * 125.64788 * 204.08999 * 17 16 15 19 19 H 1.08006 * 120.00261 * 180.02562 * 18 17 16 20 20 C 1.38804 * 120.00046 * 0.04444 * 18 17 16 21 21 N 1.31614 * 120.00546 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00059 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47057 * 60.00095 * 22 20 18 24 24 H 1.48494 * 109.47293 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.46917 * 300.00060 * 22 20 18 26 26 C 1.47018 * 108.70479 * 24.12855 * 17 16 15 27 27 H 1.09002 * 109.47237 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47327 * 300.00750 * 1 2 3 29 29 H 1.09007 * 109.47042 * 60.00162 * 1 2 3 30 30 H 1.09000 * 109.47179 * 240.00023 * 2 1 3 31 31 H 1.09002 * 109.46817 * 119.99416 * 2 1 3 32 32 H 1.09003 * 109.51927 * 295.11317 * 8 6 4 33 33 H 1.09003 * 109.52357 * 55.30985 * 8 6 4 34 34 H 1.09002 * 109.52064 * 298.04794 * 10 9 8 35 35 H 1.09001 * 109.57822 * 177.89211 * 10 9 8 36 36 H 1.09000 * 109.52640 * 184.78779 * 11 10 9 37 37 H 1.08996 * 109.52632 * 64.59073 * 11 10 9 38 38 H 1.08995 * 111.00623 * 35.21453 * 15 13 3 39 39 H 1.09002 * 111.00295 * 159.06741 * 15 13 3 40 40 H 1.08999 * 110.36915 * 204.15481 * 16 15 13 41 41 H 1.08998 * 110.36887 * 81.82564 * 16 15 13 42 42 H 0.96999 * 120.00878 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.88853 * 239.52128 * 26 17 16 44 44 H 1.09003 * 109.88832 * 118.35342 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1365 2.0542 1.1617 5 8 1.9110 1.4934 2.2131 6 6 2.5490 3.5037 1.1542 7 1 3.4860 3.6130 0.6082 8 6 1.4610 4.3419 0.4767 9 8 1.8073 5.7268 0.5729 10 6 1.9806 6.1816 1.9183 11 6 3.0686 5.3434 2.5959 12 8 2.7222 3.9585 2.4996 13 6 2.3782 2.0310 -1.2628 14 1 2.7527 3.0387 -1.0833 15 6 1.1670 2.0556 -2.2321 16 6 1.2428 0.6419 -2.8609 17 7 2.6846 0.3704 -3.0062 18 6 3.2463 -0.5018 -3.8999 19 1 4.3183 -0.6308 -3.9277 20 6 2.4381 -1.2200 -4.7704 21 7 1.1319 -1.0622 -4.7372 22 14 3.2045 -2.4093 -5.9901 23 1 3.9579 -3.4561 -5.2541 24 1 2.1346 -3.0467 -6.7990 25 1 4.1301 -1.6710 -6.8865 26 6 3.4193 1.1905 -2.0320 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.3831 4.0579 -0.5728 33 1 0.5062 4.1698 0.9735 34 1 1.0433 6.0713 2.4636 35 1 2.2783 7.2301 1.9140 36 1 3.1466 5.6273 3.6453 37 1 4.0234 5.5154 2.0991 38 1 0.2329 2.1911 -1.6869 39 1 1.2899 2.8280 -2.9914 40 1 0.7552 0.6335 -3.8356 41 1 0.7833 -0.0926 -2.1995 42 1 0.5671 -1.5638 -5.3458 43 1 4.1160 1.8484 -2.5516 44 1 3.9610 0.5467 -1.3389 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033761979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:03 Heat of formation + Delta-G solvation = -92.782861 kcal Electronic energy + Delta-G solvation = -26397.730543 eV Core-core repulsion = 22737.357775 eV Total energy + Delta-G solvation = -3660.372768 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.99166 -40.45215 -39.10582 -37.08468 -36.09365 -33.97779 -33.51715 -31.68092 -30.97971 -29.24083 -28.52428 -26.52893 -26.07156 -24.27714 -22.73737 -22.44472 -21.90276 -20.11467 -18.95618 -18.87551 -17.96457 -17.68134 -17.13160 -16.70355 -16.56995 -16.49304 -16.27681 -15.70101 -15.63817 -14.83801 -14.73616 -14.46226 -14.23277 -14.13256 -13.80577 -13.54493 -13.34726 -13.20824 -12.99453 -12.91187 -12.69905 -12.58580 -12.35968 -12.06503 -12.04751 -11.92180 -11.79863 -11.62257 -11.50598 -11.42519 -10.79408 -10.63038 -10.28496 -9.77571 -8.80816 -7.71978 -5.14853 1.36602 1.50580 1.51413 1.57691 1.59441 2.52626 2.62916 2.70742 3.30291 3.38162 3.43956 3.66941 3.77239 3.80769 3.93683 3.97931 4.10369 4.12237 4.18521 4.25273 4.38434 4.46482 4.51251 4.54373 4.68148 4.74281 4.78911 4.81630 4.87896 4.92871 4.97548 5.03691 5.14970 5.28561 5.46899 5.53714 5.76530 5.86041 5.87813 5.90477 6.33567 6.39071 6.99769 7.17323 7.83974 8.45924 9.28281 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.026818 B = 0.004126 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.807544 B = 6784.482832 C = 7083.843350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.110 3.890 3 N -0.583 5.583 4 C 0.521 3.479 5 O -0.563 6.563 6 C 0.042 3.958 7 H 0.110 0.890 8 C 0.039 3.961 9 O -0.380 6.380 10 C 0.016 3.984 11 C 0.017 3.983 12 O -0.381 6.381 13 C 0.125 3.875 14 H 0.129 0.871 15 C -0.146 4.146 16 C 0.142 3.858 17 N -0.619 5.619 18 C -0.236 4.236 19 H 0.076 0.924 20 C -0.057 4.057 21 N -0.941 5.941 22 Si 0.971 3.029 23 H -0.284 1.284 24 H -0.296 1.296 25 H -0.279 1.279 26 C 0.122 3.878 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.127 0.873 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.137 0.863 36 H 0.130 0.870 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.021 0.979 42 H 0.246 0.754 43 H 0.048 0.952 44 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.891 14.919 10.908 18.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.012 4.012 3 N -0.315 5.315 4 C 0.309 3.691 5 O -0.441 6.441 6 C -0.019 4.019 7 H 0.127 0.873 8 C -0.039 4.039 9 O -0.299 6.299 10 C -0.060 4.060 11 C -0.059 4.059 12 O -0.300 6.300 13 C 0.021 3.979 14 H 0.147 0.853 15 C -0.185 4.185 16 C 0.018 3.982 17 N -0.346 5.346 18 C -0.365 4.365 19 H 0.094 0.906 20 C -0.251 4.251 21 N -0.591 5.591 22 Si 0.800 3.200 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.205 1.205 26 C -0.004 4.004 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.038 0.962 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 0.725 14.482 11.312 18.391 hybrid contribution 0.354 -1.209 -0.690 1.436 sum 1.079 13.273 10.622 17.034 Atomic orbital electron populations 1.22129 0.94797 1.02628 1.01841 1.21503 0.95328 0.81975 1.02424 1.47946 1.63773 1.13980 1.05838 1.20366 0.77175 0.88355 0.83189 1.90669 1.51267 1.70310 1.31875 1.22567 1.01587 0.91204 0.86546 0.87288 1.23276 0.95681 0.81680 1.03215 1.88130 1.90592 1.23606 1.27531 1.23537 0.98992 1.00773 0.82723 1.23641 0.98228 0.79634 1.04434 1.88185 1.91015 1.27126 1.23701 1.22461 0.96067 0.96644 0.82682 0.85345 1.23346 0.97350 0.99611 0.98155 1.22051 0.84739 0.91451 0.99994 1.44701 1.03040 1.47628 1.39181 1.19309 0.91904 1.15115 1.10168 0.90572 1.25434 0.96013 1.02012 1.01608 1.70007 1.03106 1.45205 1.40782 0.85268 0.76845 0.78905 0.78954 1.21045 1.22196 1.20520 1.21791 0.94184 0.93346 0.91101 0.91429 0.92996 0.91420 0.89755 0.92024 0.85526 0.91927 0.91891 0.84493 0.85187 0.90725 0.89650 0.89367 0.91273 0.96156 0.94466 0.93451 0.96164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.96 9.25 71.98 0.67 -4.29 16 2 C 0.11 3.86 5.04 86.38 0.44 4.29 16 3 N -0.58 -18.31 2.44 -791.23 -1.93 -20.24 16 4 C 0.52 16.69 7.03 87.66 0.62 17.30 16 5 O -0.56 -22.40 16.16 15.93 0.26 -22.14 16 6 C 0.04 1.06 2.40 29.90 0.07 1.13 16 7 H 0.11 2.36 7.28 -2.39 -0.02 2.34 16 8 C 0.04 0.83 5.93 72.03 0.43 1.26 16 9 O -0.38 -7.62 10.85 -136.01 -1.48 -9.10 16 10 C 0.02 0.23 7.05 72.03 0.51 0.74 16 11 C 0.02 0.27 7.05 72.03 0.51 0.77 16 12 O -0.38 -10.04 10.03 -122.91 -1.23 -11.27 16 13 C 0.12 3.66 2.57 46.18 0.12 3.78 16 14 H 0.13 2.90 4.64 -2.39 -0.01 2.89 16 15 C -0.15 -4.57 5.47 31.99 0.17 -4.39 16 16 C 0.14 6.18 4.75 86.86 0.41 6.59 16 17 N -0.62 -28.91 2.91 -691.98 -2.01 -30.92 16 18 C -0.24 -12.45 10.27 84.03 0.86 -11.59 16 19 H 0.08 3.91 7.83 -2.91 -0.02 3.88 16 20 C -0.06 -3.10 5.49 84.86 0.47 -2.63 16 21 N -0.94 -52.93 10.09 21.65 0.22 -52.71 16 22 Si 0.97 44.20 29.55 68.60 2.03 46.22 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 26 C 0.12 4.51 6.17 86.73 0.54 5.05 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 2.16 4.91 -2.38 -0.01 2.15 16 30 H 0.08 3.45 4.97 -2.39 -0.01 3.44 16 31 H 0.06 2.24 7.54 -2.39 -0.02 2.23 16 32 H 0.13 2.49 5.17 -2.39 -0.01 2.48 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 2.39 6.85 -2.39 -0.02 2.37 16 39 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.07 3.57 5.87 -2.39 -0.01 3.55 16 41 H 0.02 0.94 4.13 -2.39 -0.01 0.93 16 42 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.02 0.80 7.97 -2.39 -0.02 0.78 16 Total: -1.00 -67.70 330.58 2.66 -65.03 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 1.01 Total: 17.11 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 5.80 Total: 18.01 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -3.73 Total: -103.87 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -2.45 Total: -42.51 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -67.70 2.66 -65.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033761979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.749 kcal (2) G-P(sol) polarization free energy of solvation -67.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds