Wall clock time and date at job start Tue Mar 31 2020 03:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.20759 * 120.00137 * 2 1 4 4 C 1.50693 * 119.99845 * 179.72005 * 2 1 3 5 5 C 1.52996 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.53007 * 109.47387 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47326 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00140 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99750 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99611 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.46203 * 325.02365 * 10 9 7 12 12 C 1.53042 * 109.46377 * 84.99791 * 10 9 7 13 13 C 1.53189 * 109.31439 * 181.38626 * 12 10 9 14 14 N 1.46931 * 108.77230 * 305.36168 * 13 12 10 15 15 C 1.36936 * 120.62954 * 233.58772 * 14 13 12 16 16 H 1.07998 * 119.99973 * 151.83318 * 15 14 13 17 17 C 1.38817 * 119.99961 * 331.83734 * 15 14 13 18 18 N 1.31614 * 120.00261 * 343.07654 * 17 15 14 19 19 Si 1.86807 * 119.99788 * 163.07626 * 17 15 14 20 20 H 1.48501 * 109.47061 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46900 * 119.99951 * 19 17 15 22 22 H 1.48498 * 109.46944 * 239.99878 * 19 17 15 23 23 C 1.46925 * 118.73938 * 53.61195 * 14 13 12 24 24 C 1.53047 * 109.46018 * 205.06457 * 10 9 7 25 25 H 1.08995 * 109.49366 * 298.56778 * 24 10 9 26 26 O 1.42901 * 109.49259 * 58.65993 * 24 10 9 27 27 H 1.08996 * 109.47102 * 240.28004 * 1 2 3 28 28 H 1.09000 * 109.47086 * 0.27838 * 1 2 3 29 29 H 1.09001 * 109.46935 * 120.27537 * 1 2 3 30 30 H 1.09003 * 109.47141 * 300.00198 * 4 2 1 31 31 H 1.09002 * 109.47006 * 59.99990 * 4 2 1 32 32 H 1.09003 * 109.47103 * 299.99973 * 5 4 2 33 33 H 1.09000 * 109.47540 * 60.00524 * 5 4 2 34 34 H 1.09003 * 109.46815 * 299.99951 * 6 5 4 35 35 H 1.09002 * 109.47005 * 59.99543 * 6 5 4 36 36 H 0.96994 * 120.00088 * 359.97438 * 9 7 6 37 37 H 1.08999 * 109.49194 * 301.33757 * 12 10 9 38 38 H 1.09001 * 109.49514 * 61.42663 * 12 10 9 39 39 H 1.08999 * 109.59084 * 65.14871 * 13 12 10 40 40 H 1.09001 * 109.58389 * 185.57969 * 13 12 10 41 41 H 0.97001 * 120.00466 * 180.02562 * 18 17 15 42 42 H 1.08996 * 109.58348 * 66.17433 * 23 14 13 43 43 H 1.08996 * 109.58256 * 186.45791 * 23 14 13 44 44 H 0.96708 * 113.99474 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3050 0.0064 5 6 3.7647 -1.0255 0.0057 6 6 4.5298 -2.3505 0.0115 7 6 6.0114 -2.0752 0.0114 8 8 6.4157 -0.9317 0.0066 9 7 6.8872 -3.0997 0.0156 10 6 8.3275 -2.8319 0.0150 11 1 8.5308 -1.9399 -0.5776 12 6 8.8054 -2.6095 1.4517 13 6 10.3048 -2.2957 1.4440 14 7 11.0094 -3.3716 0.7334 15 6 12.0559 -4.0288 1.3234 16 1 12.2740 -5.0509 1.0514 17 6 12.8364 -3.3811 2.2713 18 7 12.8006 -2.0690 2.3681 19 14 13.9374 -4.3720 3.4096 20 1 13.7962 -5.8175 3.1002 21 1 15.3505 -3.9592 3.2144 22 1 13.5403 -4.1269 4.8193 23 6 10.5701 -3.7286 -0.6224 24 6 9.0678 -4.0262 -0.5916 25 1 8.8850 -4.9135 0.0146 26 8 8.5988 -4.2521 -1.9224 27 1 -0.3633 -0.5095 0.8925 28 1 -0.3633 1.0277 -0.0050 29 1 -0.3633 -0.5181 -0.8875 30 1 1.9971 -1.8723 0.8991 31 1 1.9971 -1.8809 -0.8808 32 1 4.0284 -0.4581 -0.8869 33 1 4.0278 -0.4499 0.8931 34 1 4.2661 -2.9183 0.9038 35 1 4.2666 -2.9259 -0.8761 36 1 6.5638 -4.0141 0.0190 37 1 8.2610 -1.7735 1.8908 38 1 8.6251 -3.5102 2.0386 39 1 10.4772 -1.3475 0.9348 40 1 10.6705 -2.2343 2.4690 41 1 13.3462 -1.6165 3.0302 42 1 10.7641 -2.8972 -1.3000 43 1 11.1127 -4.6109 -0.9618 44 1 9.0255 -4.9965 -2.3687 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099671107.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:43 Heat of formation + Delta-G solvation = -119.317205 kcal Electronic energy + Delta-G solvation = -24341.483321 eV Core-core repulsion = 20679.959937 eV Total energy + Delta-G solvation = -3661.523384 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.94231 -39.51301 -37.96405 -35.40982 -34.53869 -34.13706 -31.96738 -31.04990 -30.04519 -28.73428 -27.84158 -25.10813 -22.95986 -22.27590 -21.54184 -20.08790 -19.81775 -19.35954 -17.29626 -16.80505 -16.50595 -16.31456 -16.05000 -15.63136 -15.15922 -15.08647 -14.81131 -14.00697 -13.88554 -13.82242 -13.43835 -13.19594 -12.89127 -12.76794 -12.57479 -12.28652 -12.20691 -12.06000 -11.86306 -11.58152 -11.56129 -11.10592 -10.91780 -10.89735 -10.65950 -10.31327 -10.25004 -9.97245 -9.93153 -9.76499 -9.68023 -9.34272 -8.71260 -8.44564 -6.77029 -5.85155 -3.29914 1.71846 2.91524 3.32825 3.37929 3.41070 3.43203 3.82737 4.36591 4.50965 4.58592 4.73288 4.75784 4.90221 5.00393 5.04560 5.22061 5.29235 5.30877 5.33322 5.38223 5.46815 5.50950 5.57240 5.72312 5.78237 5.96985 5.98957 6.13471 6.23485 6.35129 6.48626 6.55238 6.67827 6.77809 6.91317 7.27226 7.29568 7.61083 7.72741 7.80419 7.91344 8.37470 8.53030 9.12771 9.75149 10.31386 11.23374 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.027699 B = 0.002728 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.628814 B =10259.891256 C =10829.079986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.348 3.652 3 O -0.451 6.451 4 C -0.173 4.173 5 C -0.098 4.098 6 C -0.139 4.139 7 C 0.507 3.493 8 O -0.540 6.540 9 N -0.719 5.719 10 C 0.162 3.838 11 H 0.086 0.914 12 C -0.146 4.146 13 C 0.171 3.829 14 N -0.588 5.588 15 C -0.259 4.259 16 H 0.067 0.933 17 C 0.005 3.995 18 N -0.898 5.898 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.120 3.880 24 C 0.080 3.920 25 H 0.056 0.944 26 O -0.571 6.571 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.395 0.605 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.024 0.976 40 H 0.093 0.907 41 H 0.255 0.745 42 H 0.029 0.971 43 H 0.060 0.940 44 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.392 -5.075 -4.971 23.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.223 3.777 3 O -0.324 6.324 4 C -0.210 4.210 5 C -0.136 4.136 6 C -0.180 4.180 7 C 0.293 3.707 8 O -0.417 6.417 9 N -0.368 5.368 10 C 0.058 3.942 11 H 0.105 0.895 12 C -0.186 4.186 13 C 0.045 3.955 14 N -0.312 5.312 15 C -0.389 4.389 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.542 5.542 19 Si 0.734 3.266 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.215 1.215 23 C -0.007 4.007 24 C 0.019 3.981 25 H 0.073 0.927 26 O -0.376 6.376 27 H 0.109 0.891 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.228 0.772 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.042 0.958 40 H 0.111 0.889 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.078 0.922 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -22.036 -3.058 -4.723 22.743 hybrid contribution 0.739 -1.579 0.496 1.813 sum -21.298 -4.638 -4.227 22.203 Atomic orbital electron populations 1.22335 0.94652 1.04880 1.04402 1.24650 0.91869 0.90500 0.70641 1.90465 1.71971 1.35156 1.34846 1.22165 0.96781 0.97469 1.04610 1.21151 0.91354 0.96121 1.04934 1.21671 0.92399 0.99806 1.04084 1.20586 0.88493 0.85374 0.76211 1.90730 1.80293 1.21353 1.49326 1.46114 1.06962 1.08919 1.74833 1.20981 0.77833 0.97945 0.97454 0.89549 1.22591 1.00782 1.01156 0.94087 1.20832 0.85427 0.89612 0.99656 1.44054 1.35561 1.41216 1.10410 1.19192 1.05898 0.94195 1.19565 0.91514 1.25097 0.97666 0.95197 1.01514 1.70041 1.41968 1.06417 1.35770 0.86208 0.80101 0.79526 0.80804 1.20230 1.21627 1.21456 1.21525 0.90933 0.99021 0.89247 1.22769 0.96273 0.96726 0.82283 0.92655 1.86484 1.66873 1.55446 1.28753 0.89059 0.90168 0.89087 0.88362 0.88389 0.90614 0.90551 0.89109 0.89077 0.77184 0.91968 0.92425 0.95801 0.88913 0.93458 0.95361 0.92189 0.78057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.00 10.26 36.01 0.37 -0.63 16 2 C 0.35 2.98 7.27 -29.04 -0.21 2.77 16 3 O -0.45 -6.13 16.71 6.00 0.10 -6.03 16 4 C -0.17 -1.16 5.64 -27.89 -0.16 -1.31 16 5 C -0.10 -1.06 3.79 -26.73 -0.10 -1.16 16 6 C -0.14 -1.37 5.70 -27.88 -0.16 -1.53 16 7 C 0.51 7.74 7.79 -10.98 -0.09 7.66 16 8 O -0.54 -10.84 15.64 5.56 0.09 -10.76 16 9 N -0.72 -10.58 4.92 -53.76 -0.26 -10.85 16 10 C 0.16 2.95 2.12 -67.89 -0.14 2.81 16 11 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 12 C -0.15 -2.91 5.65 -26.61 -0.15 -3.06 16 13 C 0.17 4.15 5.30 -3.71 -0.02 4.13 16 14 N -0.59 -14.51 2.99 -172.32 -0.52 -15.02 16 15 C -0.26 -6.94 9.58 -15.06 -0.14 -7.09 16 16 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 17 C 0.00 0.12 4.92 -17.43 -0.09 0.04 16 18 N -0.90 -26.01 11.20 55.49 0.62 -25.39 16 19 Si 0.90 21.31 29.59 -169.99 -5.03 16.28 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.12 2.46 6.14 -3.71 -0.02 2.44 16 24 C 0.08 1.37 3.14 -26.61 -0.08 1.29 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 O -0.57 -8.50 13.16 -35.23 -0.46 -8.96 16 27 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16 33 H 0.08 1.01 8.05 -51.93 -0.42 0.59 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.40 4.63 8.60 -40.82 -0.35 4.28 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 2.49 6.06 -51.93 -0.31 2.17 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 44 H 0.37 3.95 9.09 45.56 0.41 4.36 16 LS Contribution 362.08 15.07 5.46 5.46 Total: -1.00 -35.27 362.08 -7.52 -42.79 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.51 Total: 6.14 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -1.00 Total: 6.34 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.16 Total: -51.26 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.28 Total: -25.74 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.27 -7.52 -42.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099671107.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.528 kcal (2) G-P(sol) polarization free energy of solvation -35.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds