Wall clock time and date at job start Tue Mar 31 2020 04:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34234 * 116.99990 * 2 1 4 4 O 1.20826 * 119.99607 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00253 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47219 * 180.02562 * 5 3 2 7 7 C 1.34772 * 119.99928 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99704 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.99948 * 179.97438 * 7 6 5 10 10 N 1.46896 * 109.47133 * 179.97438 * 9 7 6 11 11 C 1.46903 * 111.00418 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47667 * 205.00504 * 11 10 9 13 13 C 1.52997 * 109.47232 * 180.02562 * 12 11 10 14 14 C 1.52992 * 109.47296 * 59.99748 * 13 12 11 15 15 C 1.50700 * 109.47257 * 59.99902 * 14 13 12 16 16 H 1.07999 * 119.99988 * 359.97438 * 15 14 13 17 17 C 1.37885 * 120.00047 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99792 * 359.72305 * 17 15 14 19 19 Si 1.86795 * 120.00009 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47163 * 59.99902 * 19 17 15 21 21 H 1.48495 * 109.47159 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47290 * 299.99897 * 19 17 15 23 23 C 1.53003 * 109.47195 * 299.99941 * 14 13 12 24 24 C 1.52994 * 109.46903 * 84.99606 * 11 10 9 25 25 H 1.08998 * 109.46634 * 60.00137 * 1 2 3 26 26 H 1.08999 * 109.46819 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47423 * 300.00113 * 1 2 3 28 28 H 1.08995 * 109.47013 * 60.00117 * 5 3 2 29 29 H 1.09002 * 109.46992 * 300.00478 * 5 3 2 30 30 H 0.96998 * 119.99594 * 0.02562 * 6 5 3 31 31 H 1.08995 * 109.47133 * 59.99744 * 9 7 6 32 32 H 1.09002 * 109.47408 * 299.99776 * 9 7 6 33 33 H 1.00896 * 111.00418 * 303.95420 * 10 9 7 34 34 H 1.09005 * 109.46638 * 325.00521 * 11 10 9 35 35 H 1.08998 * 109.46987 * 59.99359 * 12 11 10 36 36 H 1.09005 * 109.46648 * 300.00005 * 12 11 10 37 37 H 1.08996 * 109.46678 * 299.99615 * 13 12 11 38 38 H 1.09004 * 109.46869 * 179.97438 * 13 12 11 39 39 H 1.08997 * 109.47279 * 180.02562 * 14 13 12 40 40 H 0.97000 * 119.99468 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.47453 * 180.02562 * 23 14 13 42 42 H 1.08996 * 109.47248 * 300.00419 * 23 14 13 43 43 H 1.08999 * 109.47824 * 300.01002 * 24 11 10 44 44 H 1.09005 * 109.46726 * 60.00969 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2750 0.0006 6 7 3.9817 2.6799 0.0011 7 6 5.2920 2.9952 0.0011 8 8 6.1273 2.1158 0.0012 9 6 5.7193 4.4403 0.0011 10 7 7.1862 4.5172 0.0017 11 6 7.6402 5.9144 0.0011 12 6 9.0414 5.9951 -0.6080 13 6 9.5144 7.4501 -0.6080 14 6 9.5519 7.9743 0.8288 15 6 10.5031 7.1369 1.6444 16 1 11.0280 6.3130 1.1840 17 6 10.7024 7.4220 2.9786 18 7 10.0665 8.4282 3.5381 19 14 11.8819 6.3845 3.9894 20 1 13.2420 6.4639 3.3985 21 1 11.9181 6.8932 5.3840 22 1 11.4237 4.9719 3.9890 23 6 8.1507 7.8936 1.4379 24 6 7.6774 6.4391 1.4377 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.9564 0.7807 -0.8891 29 1 3.9557 0.7810 0.8908 30 1 3.3136 3.3831 0.0014 31 1 5.3294 4.9345 0.8909 32 1 5.3296 4.9344 -0.8890 33 1 7.5745 4.0110 0.7833 34 1 6.9521 6.5197 -0.5891 35 1 9.0148 5.6212 -1.6315 36 1 9.7295 5.3897 -0.0178 37 1 8.8264 8.0557 -1.1979 38 1 10.5129 7.5075 -1.0416 39 1 9.8885 9.0110 0.8287 40 1 10.2064 8.6285 4.4769 41 1 8.1772 8.2675 2.4614 42 1 7.4627 8.4992 0.8480 43 1 6.6792 6.3816 1.8717 44 1 8.3656 5.8338 2.0279 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328495.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:35 Heat of formation + Delta-G solvation = -131.788435 kcal Electronic energy + Delta-G solvation = -24132.056879 eV Core-core repulsion = 20469.992702 eV Total energy + Delta-G solvation = -3662.064177 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.10394 -39.70227 -38.07232 -37.13115 -34.88530 -34.49095 -32.07014 -30.13798 -29.50636 -28.78248 -27.32899 -25.40161 -24.15549 -21.67220 -21.42714 -20.74196 -20.62201 -18.85244 -18.17086 -17.70351 -17.20889 -16.49005 -16.15127 -15.67577 -15.55319 -14.89721 -14.50481 -14.40522 -14.12933 -13.84772 -13.54458 -13.46358 -13.05697 -12.87813 -12.60799 -12.55834 -12.18722 -11.74225 -11.35619 -11.32429 -11.31534 -11.11554 -10.96487 -10.83375 -10.57449 -10.30234 -10.06911 -9.94425 -9.65090 -9.47739 -9.15707 -8.96189 -8.66117 -8.27055 -7.85300 -5.92720 -3.96605 1.59939 1.92840 2.54150 2.99003 3.35144 3.39735 3.43351 4.14015 4.48372 4.55560 4.61055 4.68506 4.72590 4.83597 4.99880 5.03546 5.32846 5.37735 5.39988 5.62584 5.74441 5.83976 6.00021 6.07888 6.34527 6.43550 6.47829 6.56115 6.78144 6.78840 6.92071 7.06338 7.11020 7.21683 7.23660 7.35378 7.50262 7.60674 7.74049 7.81079 7.98173 8.07025 8.19394 8.53918 9.06109 9.66474 11.13079 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.024193 B = 0.002642 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.079014 B =10594.127413 C =10938.787476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.460 3.540 4 O -0.504 6.504 5 C 0.129 3.871 6 N -0.732 5.732 7 C 0.519 3.481 8 O -0.519 6.519 9 C 0.044 3.956 10 N -0.673 5.673 11 C 0.095 3.905 12 C -0.092 4.092 13 C -0.107 4.107 14 C 0.042 3.958 15 C -0.499 4.499 16 H 0.055 0.945 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.884 3.116 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.278 1.278 23 C -0.104 4.104 24 C -0.128 4.128 25 H 0.065 0.935 26 H 0.105 0.895 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.411 0.589 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.350 0.650 34 H 0.063 0.937 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.032 0.968 38 H 0.047 0.953 39 H 0.024 0.976 40 H 0.258 0.742 41 H 0.090 0.910 42 H 0.013 0.987 43 H 0.027 0.973 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.397 -13.225 -6.948 23.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.302 3.698 4 O -0.391 6.391 5 C 0.004 3.996 6 N -0.392 5.392 7 C 0.306 3.694 8 O -0.393 6.393 9 C -0.089 4.089 10 N -0.304 5.304 11 C -0.014 4.014 12 C -0.130 4.130 13 C -0.145 4.145 14 C 0.024 3.976 15 C -0.537 4.537 16 H 0.074 0.926 17 C -0.141 4.141 18 N -0.532 5.532 19 Si 0.712 3.288 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.203 1.203 23 C -0.142 4.142 24 C -0.167 4.167 25 H 0.084 0.916 26 H 0.123 0.877 27 H 0.084 0.916 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.249 0.751 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.170 0.830 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.042 0.958 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.032 0.968 43 H 0.046 0.954 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.978 -13.575 -7.460 23.731 hybrid contribution -0.291 0.062 1.631 1.658 sum -18.269 -13.513 -5.829 23.460 Atomic orbital electron populations 1.23346 0.75471 1.04103 1.02859 1.86489 1.24041 1.32595 1.83849 1.23643 0.91999 0.81790 0.72335 1.90687 1.66852 1.36285 1.45270 1.20580 0.86522 0.86012 1.06506 1.45829 1.08580 1.06830 1.77921 1.20875 0.80979 0.92293 0.75235 1.90731 1.51091 1.49927 1.47533 1.21772 0.92476 0.91616 1.03010 1.60449 1.04024 1.14743 1.51217 1.21642 0.97138 0.85826 0.96814 1.21334 0.95036 0.97763 0.98822 1.21563 0.98636 0.94838 0.99483 1.18696 0.92918 0.96351 0.89624 1.21139 1.23867 1.14403 0.94303 0.92644 1.24947 0.95946 0.95205 0.97982 1.69866 1.42550 1.28581 1.12245 0.86783 0.81905 0.80792 0.79281 1.20395 1.21539 1.20325 1.21443 0.96711 0.92712 1.03368 1.22045 0.98569 1.00423 0.95692 0.91604 0.87696 0.91587 0.86900 0.86946 0.75130 0.92042 0.88140 0.83044 0.91882 0.93802 0.91134 0.94924 0.93392 0.95834 0.93199 0.89214 0.96844 0.95399 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.56 101.05 1.07 1.24 16 2 O -0.35 -2.66 10.57 -39.27 -0.41 -3.07 16 3 C 0.46 3.94 8.03 36.00 0.29 4.22 16 4 O -0.50 -5.42 15.42 -18.75 -0.29 -5.71 16 5 C 0.13 1.06 6.27 -5.19 -0.03 1.03 16 6 N -0.73 -7.16 5.53 -61.47 -0.34 -7.50 16 7 C 0.52 6.65 7.87 -10.99 -0.09 6.56 16 8 O -0.52 -8.49 16.20 5.56 0.09 -8.40 16 9 C 0.04 0.56 5.97 -4.98 -0.03 0.53 16 10 N -0.67 -10.86 5.87 -108.00 -0.63 -11.49 16 11 C 0.09 1.67 2.47 -67.71 -0.17 1.50 16 12 C -0.09 -1.76 5.30 -26.73 -0.14 -1.90 16 13 C -0.11 -2.20 5.41 -26.74 -0.14 -2.35 16 14 C 0.04 1.03 2.58 -91.77 -0.24 0.79 16 15 C -0.50 -13.16 6.61 -34.44 -0.23 -13.39 16 16 H 0.06 1.46 6.71 -52.49 -0.35 1.11 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 18 N -0.89 -25.13 11.33 55.43 0.63 -24.50 16 19 Si 0.88 21.24 29.54 -169.99 -5.02 16.22 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.10 -2.37 5.23 -26.75 -0.14 -2.51 16 24 C -0.13 -2.57 4.95 -26.76 -0.13 -2.70 16 25 H 0.07 0.32 8.13 -51.93 -0.42 -0.10 16 26 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 28 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.41 3.59 7.44 -40.82 -0.30 3.29 16 31 H 0.06 0.73 7.43 -51.93 -0.39 0.35 16 32 H 0.10 1.12 8.05 -51.93 -0.42 0.70 16 33 H 0.35 6.03 8.17 -39.29 -0.32 5.71 16 34 H 0.06 1.06 7.80 -51.93 -0.40 0.65 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.49 6.62 -51.93 -0.34 1.14 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.09 2.32 6.08 -51.93 -0.32 2.01 16 42 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.03 0.51 7.45 -51.93 -0.39 0.12 16 44 H 0.07 1.67 7.20 -51.93 -0.37 1.30 16 LS Contribution 354.99 15.07 5.35 5.35 Total: -1.00 -31.18 354.99 -7.68 -38.86 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.97 Total: 5.69 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -0.08 Total: -5.43 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.35 Total: -43.50 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.61 Total: -17.19 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.18 -7.68 -38.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328495.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.927 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds