Wall clock time and date at job start Tue Mar 31 2020 03:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21285 * 119.99961 * 2 1 4 4 N 1.34780 * 120.00016 * 179.97438 * 2 1 3 5 5 C 1.46505 * 119.99885 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.47287 * 325.00006 * 5 4 2 7 7 C 1.53002 * 109.47380 * 84.99940 * 5 4 2 8 8 C 1.53003 * 109.47014 * 295.00247 * 7 5 4 9 9 O 1.42897 * 109.46947 * 180.02562 * 8 7 5 10 10 C 1.50699 * 109.46793 * 204.99949 * 5 4 2 11 11 O 1.21277 * 120.00351 * 359.97438 * 10 5 4 12 12 N 1.34779 * 119.99622 * 180.02562 * 10 5 4 13 13 C 1.46499 * 119.99863 * 180.02562 * 12 10 5 14 14 H 1.09005 * 109.35317 * 324.81643 * 13 12 10 15 15 C 1.52959 * 109.41821 * 84.64317 * 13 12 10 16 16 C 1.53652 * 109.32660 * 183.83330 * 15 13 12 17 17 C 1.51269 * 108.31082 * 305.14051 * 16 15 13 18 18 C 1.37885 * 120.84892 * 231.38027 * 17 16 15 19 19 N 1.31516 * 119.99913 * 180.27944 * 18 17 16 20 20 Si 1.86798 * 119.99766 * 0.28022 * 18 17 16 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 17 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 17 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 17 24 24 C 1.51267 * 118.30147 * 51.65779 * 17 16 15 25 25 C 1.52964 * 109.41240 * 204.99665 * 13 12 10 26 26 H 1.09004 * 109.46883 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47365 * 300.00250 * 1 2 3 28 28 H 1.09007 * 109.46708 * 60.00567 * 1 2 3 29 29 H 0.96998 * 120.00017 * 0.02562 * 4 2 1 30 30 H 1.08999 * 109.46889 * 54.99464 * 7 5 4 31 31 H 1.08999 * 109.47376 * 175.00040 * 7 5 4 32 32 H 1.09003 * 109.46577 * 299.99870 * 8 7 5 33 33 H 1.08999 * 109.47218 * 59.99696 * 8 7 5 34 34 H 0.96704 * 113.99859 * 179.97438 * 9 8 7 35 35 H 0.97007 * 120.00304 * 359.97438 * 12 10 5 36 36 H 1.09001 * 109.47998 * 303.68926 * 15 13 12 37 37 H 1.08999 * 109.47702 * 63.72290 * 15 13 12 38 38 H 1.09007 * 109.69461 * 185.52287 * 16 15 13 39 39 H 1.09007 * 109.78671 * 64.80813 * 16 15 13 40 40 H 0.97001 * 119.99646 * 179.97438 * 19 18 17 41 41 H 1.09001 * 109.63015 * 68.11448 * 24 17 16 42 42 H 1.09004 * 109.62839 * 188.49697 * 24 17 16 43 43 H 1.09002 * 109.47682 * 56.31342 * 25 13 12 44 44 H 1.08996 * 109.49475 * 296.28284 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0095 -0.3255 -0.5884 7 6 4.1554 -1.0411 1.4383 8 6 3.7504 0.3210 2.0053 9 8 4.2267 0.4390 3.3474 10 6 4.1484 -2.4550 -0.5989 11 8 3.3605 -3.2908 -0.9881 12 7 5.4736 -2.6784 -0.7019 13 6 5.9621 -3.9301 -1.2857 14 1 5.2896 -4.7431 -1.0118 15 6 6.0060 -3.7978 -2.8089 16 6 6.4265 -5.1415 -3.4242 17 6 7.7377 -5.5615 -2.7976 18 6 8.8128 -5.9219 -3.5821 19 7 9.9433 -6.2896 -3.0196 20 14 8.6635 -5.8879 -5.4438 21 1 9.9494 -6.3156 -6.0513 22 1 7.5823 -6.8119 -5.8707 23 1 8.3407 -4.5087 -5.8894 24 6 7.8372 -5.5821 -1.2883 25 6 7.3639 -4.2276 -0.7505 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.6959 -2.0073 0.0005 30 1 3.7205 -1.8326 2.0486 31 1 5.2417 -1.1302 1.4478 32 1 4.1852 1.1125 1.3949 33 1 2.6641 0.4101 1.9958 34 1 4.0060 1.2800 3.7706 35 1 6.1038 -2.0101 -0.3902 36 1 5.0179 -3.5233 -3.1785 37 1 6.7251 -3.0270 -3.0862 38 1 6.5548 -5.0285 -4.5008 39 1 5.6655 -5.8949 -3.2204 40 1 10.6995 -6.5435 -3.5715 41 1 7.2045 -6.3755 -0.8904 42 1 8.8718 -5.7555 -0.9920 43 1 7.3381 -4.2579 0.3388 44 1 8.0509 -3.4468 -1.0763 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182135370.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:54 Heat of formation + Delta-G solvation = -173.110160 kcal Electronic energy + Delta-G solvation = -24937.414747 eV Core-core repulsion = 21273.558725 eV Total energy + Delta-G solvation = -3663.856022 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.68337 -40.36175 -38.52750 -37.90264 -35.98363 -35.48267 -33.66185 -32.72094 -31.47415 -30.22669 -29.34910 -27.17571 -24.12883 -23.32956 -22.99096 -21.65840 -21.38686 -21.23320 -19.01027 -18.33935 -18.04538 -17.85836 -17.07850 -16.83531 -16.43885 -16.20285 -15.94057 -15.68267 -15.15615 -14.99888 -14.65249 -14.53629 -14.22289 -14.15857 -13.92924 -13.73558 -13.48482 -13.28627 -12.97133 -12.78471 -12.68648 -12.61352 -12.55852 -12.25224 -12.01037 -11.82759 -11.61607 -11.14383 -11.01643 -10.88723 -10.82295 -10.67901 -10.55312 -10.26161 -9.96269 -8.18552 -6.12337 1.38554 1.40507 1.43593 1.47933 1.57546 1.83506 2.39527 2.39835 3.08719 3.19342 3.58338 3.87003 3.92294 4.00833 4.07038 4.17552 4.27103 4.37950 4.47913 4.52188 4.62227 4.68245 4.70290 4.82120 4.85534 4.94020 5.00953 5.05942 5.07854 5.09531 5.18870 5.22537 5.28502 5.54341 5.55391 5.65320 5.75224 5.82146 6.33459 6.47203 6.50347 6.83582 6.93490 7.12823 7.16307 7.45860 8.92092 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.024057 B = 0.003356 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.632806 B = 8340.671747 C = 9055.920305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.509 3.491 3 O -0.582 6.582 4 N -0.709 5.709 5 C 0.138 3.862 6 H 0.117 0.883 7 C -0.123 4.123 8 C 0.091 3.909 9 O -0.593 6.593 10 C 0.513 3.487 11 O -0.569 6.569 12 N -0.706 5.706 13 C 0.167 3.833 14 H 0.063 0.937 15 C -0.107 4.107 16 C -0.011 4.011 17 C -0.501 4.501 18 C 0.027 3.973 19 N -0.928 5.928 20 Si 0.939 3.061 21 H -0.293 1.293 22 H -0.271 1.271 23 H -0.265 1.265 24 C 0.009 3.991 25 C -0.102 4.102 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.416 0.584 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.397 0.603 35 H 0.413 0.587 36 H 0.042 0.958 37 H 0.055 0.945 38 H 0.026 0.974 39 H 0.017 0.983 40 H 0.264 0.736 41 H -0.001 1.001 42 H 0.033 0.967 43 H 0.061 0.939 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.193 14.374 8.928 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.299 3.701 3 O -0.462 6.462 4 N -0.364 5.364 5 C 0.029 3.971 6 H 0.135 0.865 7 C -0.162 4.162 8 C 0.013 3.987 9 O -0.402 6.402 10 C 0.299 3.701 11 O -0.448 6.448 12 N -0.357 5.357 13 C 0.063 3.937 14 H 0.081 0.919 15 C -0.146 4.146 16 C -0.049 4.049 17 C -0.520 4.520 18 C -0.172 4.172 19 N -0.567 5.567 20 Si 0.766 3.234 21 H -0.219 1.219 22 H -0.196 1.196 23 H -0.190 1.190 24 C -0.029 4.029 25 C -0.140 4.140 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.122 0.878 29 H 0.254 0.746 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.247 0.753 35 H 0.249 0.751 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.044 0.956 39 H 0.035 0.965 40 H 0.073 0.927 41 H 0.017 0.983 42 H 0.052 0.948 43 H 0.079 0.921 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.920 13.855 8.488 22.747 hybrid contribution 0.359 0.036 -0.906 0.975 sum -15.561 13.891 7.582 22.194 Atomic orbital electron populations 1.21885 0.88069 1.06144 1.06288 1.21525 0.92253 0.82404 0.73949 1.90705 1.71576 1.32374 1.51555 1.46018 1.05303 1.10349 1.74702 1.20606 0.83097 0.95949 0.97433 0.86495 1.21847 1.02922 0.98265 0.93132 1.22123 0.97779 0.96184 0.82598 1.86382 1.81631 1.43988 1.28158 1.20710 0.82872 0.88249 0.78313 1.90686 1.55946 1.47467 1.50682 1.46104 1.06625 1.21102 1.61833 1.20676 0.95366 0.84958 0.92667 0.91919 1.21861 0.98831 0.98753 0.95148 1.19681 0.95752 0.93944 0.95560 1.20605 0.95916 1.42840 0.92669 1.25533 0.94837 0.94824 1.02010 1.69939 1.03365 1.46478 1.36933 0.85861 0.76822 0.79124 0.81584 1.21937 1.19594 1.19049 1.19292 0.96915 0.92316 0.94391 1.21707 0.94085 0.99627 0.98595 0.88488 0.87329 0.87779 0.74569 0.90704 0.88846 0.93180 0.93597 0.75318 0.75081 0.93912 0.92655 0.95552 0.96453 0.92706 0.98297 0.94797 0.92061 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 10.39 71.23 0.74 -0.86 16 2 C 0.51 9.32 6.51 87.65 0.57 9.89 16 3 O -0.58 -14.35 14.24 -3.05 -0.04 -14.39 16 4 N -0.71 -13.44 4.90 -446.08 -2.19 -15.62 16 5 C 0.14 2.92 2.67 44.24 0.12 3.04 16 6 H 0.12 2.49 7.58 -2.39 -0.02 2.47 16 7 C -0.12 -2.40 5.20 30.60 0.16 -2.24 16 8 C 0.09 1.77 5.65 71.98 0.41 2.18 16 9 O -0.59 -11.43 13.66 -148.98 -2.03 -13.46 16 10 C 0.51 13.98 7.18 87.66 0.63 14.61 16 11 O -0.57 -19.29 15.50 -3.02 -0.05 -19.34 16 12 N -0.71 -19.30 4.94 -442.65 -2.18 -21.49 16 13 C 0.17 5.99 2.35 44.97 0.11 6.10 16 14 H 0.06 2.51 7.58 -2.38 -0.02 2.49 16 15 C -0.11 -4.20 5.52 30.80 0.17 -4.03 16 16 C -0.01 -0.51 5.62 30.25 0.17 -0.34 16 17 C -0.50 -25.89 5.50 -16.17 -0.09 -25.98 16 18 C 0.03 1.45 5.46 84.66 0.46 1.91 16 19 N -0.93 -53.49 12.73 21.45 0.27 -53.22 16 20 Si 0.94 43.29 26.80 68.60 1.84 45.13 16 21 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 C 0.01 0.43 5.97 30.11 0.18 0.61 16 25 C -0.10 -3.87 5.40 30.66 0.17 -3.70 16 26 H 0.10 0.60 7.91 -2.38 -0.02 0.58 16 27 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.42 7.36 7.63 -92.71 -0.71 6.65 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 1.70 7.43 -2.39 -0.02 1.68 16 32 H 0.05 1.02 7.85 -2.39 -0.02 1.00 16 33 H 0.05 0.92 5.65 -2.39 -0.01 0.91 16 34 H 0.40 4.17 9.12 -74.05 -0.68 3.49 16 35 H 0.41 8.91 7.96 -92.70 -0.74 8.18 16 36 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.03 1.18 5.17 -2.38 -0.01 1.17 16 39 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 41 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 42 H 0.03 1.81 7.07 -2.38 -0.02 1.79 16 43 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -68.83 350.02 -1.68 -70.50 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -1.08 Total: 20.72 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 3.79 Total: 1.18 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -4.10 Total: -90.33 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -2.13 Total: -47.19 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.84 Total: 45.13 kcal Total: -68.83 -1.68 -70.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182135370.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.605 kcal (2) G-P(sol) polarization free energy of solvation -68.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds