Wall clock time and date at job start Tue Mar 31 2020 04:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47397 * 2 1 4 4 N 1.46501 * 109.46881 * 240.00309 * 2 1 3 5 5 C 1.34773 * 120.00347 * 85.00146 * 4 2 1 6 6 N 1.34770 * 120.00264 * 179.97438 * 5 4 2 7 7 O 1.21596 * 119.99735 * 359.97438 * 5 4 2 8 8 C 1.50707 * 109.47222 * 120.00277 * 2 1 3 9 9 O 1.21279 * 119.99901 * 97.26063 * 8 2 1 10 10 N 1.34769 * 119.99697 * 277.26389 * 8 2 1 11 11 C 1.46924 * 120.63248 * 4.79618 * 10 8 2 12 12 C 1.52763 * 109.00996 * 233.58215 * 11 10 8 13 13 C 1.53045 * 109.38112 * 305.59115 * 12 11 10 14 14 C 1.53007 * 109.44574 * 181.25124 * 13 12 11 15 15 N 1.46497 * 109.47080 * 64.93706 * 14 13 12 16 16 C 1.36936 * 119.99794 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00115 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00054 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99934 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00290 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47514 * 59.99153 * 20 18 16 22 22 H 1.48492 * 109.47433 * 179.97438 * 20 18 16 23 23 H 1.48511 * 109.47003 * 299.99639 * 20 18 16 24 24 C 1.53037 * 109.53939 * 61.23939 * 13 12 11 25 25 C 1.46929 * 120.63049 * 185.07334 * 10 8 2 26 26 H 1.09004 * 109.46864 * 296.07499 * 1 2 3 27 27 H 1.08990 * 109.47014 * 56.07397 * 1 2 3 28 28 H 1.08997 * 109.47093 * 176.07715 * 1 2 3 29 29 H 0.97000 * 119.99527 * 264.99813 * 4 2 1 30 30 H 0.96997 * 120.00374 * 0.02562 * 6 5 4 31 31 H 0.97004 * 119.99774 * 180.02562 * 6 5 4 32 32 H 1.08996 * 109.59056 * 353.41894 * 11 10 8 33 33 H 1.09007 * 109.58605 * 113.84698 * 11 10 8 34 34 H 1.08993 * 109.56972 * 185.55639 * 12 11 10 35 35 H 1.08996 * 109.35991 * 65.49554 * 12 11 10 36 36 H 1.09000 * 109.45934 * 301.21296 * 13 12 11 37 37 H 1.08997 * 109.47045 * 184.93543 * 14 13 12 38 38 H 1.09001 * 109.47260 * 304.93621 * 14 13 12 39 39 H 0.96996 * 120.00254 * 0.02562 * 15 14 13 40 40 H 0.96999 * 119.99775 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.49742 * 178.68579 * 24 13 12 42 42 H 1.09003 * 109.50004 * 58.58406 * 24 13 12 43 43 H 1.08995 * 109.59097 * 246.16154 * 25 10 8 44 44 H 1.09007 * 109.58230 * 6.44230 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 7 2.5967 -0.6534 -3.4575 7 8 1.8575 1.1615 -2.4118 8 6 2.0324 -0.7105 1.2305 9 8 2.3597 -1.8765 1.1663 10 7 2.1179 -0.0501 2.4022 11 6 1.6277 1.3299 2.5212 12 6 2.7436 2.2074 3.0855 13 6 3.2496 1.6042 4.3979 14 6 4.3459 2.4986 4.9803 15 7 3.7745 3.7976 5.3438 16 6 4.5724 4.7684 5.8880 17 1 5.6228 4.5763 6.0496 18 6 4.0309 5.9991 6.2330 19 7 2.7506 6.2332 6.0365 20 14 5.1194 7.3237 6.9746 21 1 6.2050 7.6641 6.0203 22 1 4.3063 8.5350 7.2514 23 1 5.7125 6.8250 8.2415 24 6 3.8175 0.2078 4.1340 25 6 2.7085 -0.6943 3.5832 26 1 -0.3633 0.4517 0.9231 27 1 -0.3633 0.5735 -0.8526 28 1 -0.3633 -1.0252 -0.0703 29 1 2.2490 -1.6317 -1.1526 30 1 2.8274 -1.5945 -3.4140 31 1 2.6897 -0.1693 -4.2929 32 1 1.3353 1.6999 1.5385 33 1 0.7704 1.3564 3.1939 34 1 2.3608 3.2110 3.2701 35 1 3.5627 2.2561 2.3680 36 1 2.4245 1.5328 5.1066 37 1 4.7673 2.0259 5.8675 38 1 5.1307 2.6419 4.2376 39 1 2.8310 3.9701 5.1991 40 1 2.3723 7.0933 6.2772 41 1 4.1988 -0.2118 5.0650 42 1 4.6264 0.2754 3.4066 43 1 1.9412 -0.8363 4.3442 44 1 3.1269 -1.6606 3.3014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205093921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:30 Heat of formation + Delta-G solvation = -90.010085 kcal Electronic energy + Delta-G solvation = -24752.597346 eV Core-core repulsion = 21124.637566 eV Total energy + Delta-G solvation = -3627.959781 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 3.59 seconds Orbital eigenvalues (eV) -41.79392 -40.61848 -39.01192 -36.59090 -36.11407 -34.81464 -34.43356 -32.59920 -31.95301 -30.98421 -28.30593 -26.14692 -25.02089 -24.34892 -23.22726 -22.14555 -21.33027 -20.41335 -19.58337 -19.08555 -18.39822 -17.80420 -16.88454 -16.73142 -16.64796 -16.03692 -15.83369 -15.61778 -15.37765 -15.34663 -15.27617 -14.77349 -14.64883 -14.04208 -14.00497 -13.65898 -13.51216 -13.28539 -13.07261 -12.93867 -12.72353 -12.68794 -12.23394 -12.16834 -11.94806 -11.68247 -11.55073 -11.52803 -11.31954 -10.93854 -10.85424 -10.72371 -10.15823 -9.72694 -8.96910 -7.93924 -5.21662 1.31665 1.47881 1.50325 1.56506 1.63921 2.08207 2.16891 2.57085 3.23976 3.39399 3.57852 3.76119 3.77526 3.88953 4.01564 4.05181 4.10918 4.30299 4.35805 4.42486 4.58956 4.62114 4.71175 4.74242 4.82062 4.86447 4.95996 5.02056 5.08778 5.15256 5.17583 5.24621 5.33186 5.47558 5.53601 5.55219 5.81407 6.01050 6.25895 6.29116 6.92501 7.01268 7.35827 7.59588 8.12452 8.36490 9.29190 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.019931 B = 0.003076 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.491528 B = 9101.644076 C = 9809.391899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.142 3.858 3 H 0.103 0.897 4 N -0.724 5.724 5 C 0.703 3.297 6 N -0.845 5.845 7 O -0.638 6.638 8 C 0.518 3.482 9 O -0.567 6.567 10 N -0.599 5.599 11 C 0.106 3.894 12 C -0.122 4.122 13 C -0.084 4.084 14 C 0.156 3.844 15 N -0.742 5.742 16 C -0.248 4.248 17 H 0.071 0.929 18 C -0.073 4.073 19 N -0.966 5.966 20 Si 0.971 3.029 21 H -0.280 1.280 22 H -0.294 1.294 23 H -0.278 1.278 24 C -0.116 4.116 25 C 0.116 3.884 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.413 0.587 30 H 0.414 0.586 31 H 0.423 0.577 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.019 0.981 38 H 0.011 0.989 39 H 0.377 0.623 40 H 0.252 0.748 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 -19.450 -14.715 24.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.033 3.967 3 H 0.121 0.879 4 N -0.382 5.382 5 C 0.401 3.599 6 N -0.414 5.414 7 O -0.520 6.520 8 C 0.306 3.694 9 O -0.447 6.447 10 N -0.331 5.331 11 C -0.016 4.016 12 C -0.160 4.160 13 C -0.103 4.103 14 C 0.030 3.970 15 N -0.385 5.385 16 C -0.380 4.380 17 H 0.089 0.911 18 C -0.265 4.265 19 N -0.617 5.617 20 Si 0.800 3.200 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.205 1.205 24 C -0.155 4.155 25 C -0.006 4.006 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.250 0.750 30 H 0.245 0.755 31 H 0.256 0.744 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.037 0.963 38 H 0.029 0.971 39 H 0.209 0.791 40 H 0.060 0.940 41 H 0.109 0.891 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.713 -19.043 -14.554 24.254 hybrid contribution 0.612 0.606 0.189 0.881 sum -3.102 -18.438 -14.366 23.578 Atomic orbital electron populations 1.22109 0.91298 1.03639 1.04147 1.20643 0.96799 0.97024 0.82269 0.87924 1.44738 1.71252 1.14569 1.07662 1.16081 0.77978 0.84411 0.81406 1.42747 1.71876 1.15747 1.11071 1.90968 1.59295 1.16325 1.85398 1.20662 0.77338 0.86616 0.84794 1.90644 1.51507 1.17153 1.85397 1.48133 1.59684 1.15033 1.10215 1.21925 0.96814 0.79471 1.03364 1.21753 0.98495 0.99117 0.96661 1.21202 0.97905 0.94493 0.96680 1.20822 0.94864 0.85439 0.95880 1.42542 1.09278 1.11483 1.75227 1.19572 0.92749 0.93481 1.32167 0.91103 1.25509 0.97373 1.00157 1.03472 1.69786 1.12478 1.23997 1.55437 0.85258 0.77727 0.78576 0.78477 1.20650 1.22029 1.20456 1.21828 0.97753 0.93912 1.01981 1.21684 0.96043 0.96398 0.86483 0.89555 0.91152 0.91098 0.74963 0.75537 0.74386 0.88271 0.88935 0.91524 0.92701 0.90780 0.96271 0.97069 0.79070 0.93960 0.89149 0.92221 0.89667 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.21 71.98 0.66 -1.94 16 2 C 0.14 2.91 2.12 44.25 0.09 3.01 16 3 H 0.10 2.39 6.05 -2.39 -0.01 2.38 16 4 N -0.72 -13.58 5.05 -461.40 -2.33 -15.91 16 5 C 0.70 14.77 8.80 179.06 1.58 16.35 16 6 N -0.85 -9.58 8.88 -184.75 -1.64 -11.23 16 7 O -0.64 -19.38 16.84 -4.02 -0.07 -19.45 16 8 C 0.52 11.76 6.92 87.66 0.61 12.37 16 9 O -0.57 -15.14 15.40 -3.03 -0.05 -15.19 16 10 N -0.60 -12.89 2.98 -819.72 -2.44 -15.33 16 11 C 0.11 2.25 5.65 86.22 0.49 2.73 16 12 C -0.12 -3.44 5.23 30.53 0.16 -3.28 16 13 C -0.08 -2.44 2.19 -10.76 -0.02 -2.47 16 14 C 0.16 6.08 5.65 86.38 0.49 6.57 16 15 N -0.74 -37.03 5.32 -343.45 -1.83 -38.86 16 16 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 17 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 18 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 19 N -0.97 -58.47 13.06 21.65 0.28 -58.18 16 20 Si 0.97 46.13 29.55 68.60 2.03 48.16 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 24 C -0.12 -2.68 5.36 30.67 0.16 -2.51 16 25 C 0.12 2.39 6.42 86.36 0.55 2.94 16 26 H 0.09 1.25 7.15 -2.39 -0.02 1.23 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.41 6.54 7.77 -92.71 -0.72 5.82 16 30 H 0.41 2.08 8.84 -92.71 -0.82 1.26 16 31 H 0.42 3.92 8.93 -92.71 -0.83 3.09 16 32 H 0.10 1.88 5.06 -2.39 -0.01 1.87 16 33 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.07 2.24 7.15 -2.39 -0.02 2.22 16 35 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.38 19.61 6.84 -92.71 -0.63 18.98 16 40 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 41 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.09 1.92 7.04 -2.38 -0.02 1.91 16 Total: -1.00 -74.14 353.83 -1.91 -76.05 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: -1.95 Total: 32.88 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 6.08 Total: 17.07 kcal Atomic # 7 Polarization: -131.56 SS G_CDS: -7.96 Total: -139.52 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -0.11 Total: -34.64 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -74.14 -1.91 -76.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205093921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.958 kcal (2) G-P(sol) polarization free energy of solvation -74.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.59 seconds