Wall clock time and date at job start Tue Mar 31 2020 04:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.45350 * 2 1 4 4 C 1.53032 * 109.46482 * 119.96893 * 2 1 3 5 5 C 1.53123 * 109.28121 * 179.19636 * 4 2 1 6 6 H 1.09002 * 109.52604 * 182.38110 * 5 4 2 7 7 N 1.46501 * 109.52078 * 62.25444 * 5 4 2 8 8 C 1.34779 * 120.00236 * 155.00101 * 7 5 4 9 9 O 1.21588 * 119.99579 * 0.02562 * 8 7 5 10 10 N 1.34774 * 119.99986 * 179.97438 * 8 7 5 11 11 C 1.46502 * 119.99756 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.46889 * 179.97438 * 11 10 8 13 13 O 1.21293 * 120.00014 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99827 * 179.97438 * 12 11 10 15 15 C 1.37100 * 119.99992 * 180.02562 * 14 12 11 16 16 H 1.07994 * 120.00103 * 0.02562 * 15 14 12 17 17 C 1.38952 * 119.99843 * 179.97438 * 15 14 12 18 18 N 1.31408 * 119.99854 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00141 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47334 * 89.99692 * 19 17 15 21 21 H 1.48505 * 109.46762 * 209.99870 * 19 17 15 22 22 H 1.48497 * 109.47092 * 329.99644 * 19 17 15 23 23 C 1.53124 * 109.16220 * 302.35028 * 5 4 2 24 24 C 1.53035 * 109.27475 * 57.64849 * 23 5 4 25 25 N 1.46846 * 109.52744 * 300.82106 * 24 23 5 26 26 C 1.46898 * 111.00056 * 185.84176 * 25 24 23 27 27 H 1.09000 * 109.46710 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47188 * 299.96956 * 1 2 3 29 29 H 1.08998 * 109.47175 * 59.97561 * 1 2 3 30 30 H 1.09001 * 109.50949 * 299.14218 * 4 2 1 31 31 H 1.09005 * 109.50313 * 59.22075 * 4 2 1 32 32 H 0.97004 * 119.99759 * 335.00003 * 7 5 4 33 33 H 0.96998 * 120.00432 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.47102 * 300.00139 * 11 10 8 35 35 H 1.09000 * 109.47479 * 60.00013 * 11 10 8 36 36 H 0.96998 * 120.00285 * 0.02562 * 14 12 11 37 37 H 0.96996 * 120.00526 * 180.02562 * 18 17 15 38 38 H 1.08993 * 109.50112 * 297.71243 * 23 5 4 39 39 H 1.08992 * 109.50394 * 177.58991 * 23 5 4 40 40 H 1.09008 * 109.45841 * 180.80263 * 24 23 5 41 41 H 1.09003 * 109.46290 * 60.84246 * 24 23 5 42 42 H 1.08997 * 109.47063 * 56.04360 * 26 25 24 43 43 H 1.08993 * 109.47414 * 176.04888 * 26 25 24 44 44 H 1.09004 * 109.47400 * 296.04746 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0279 0.0000 4 6 2.0399 -0.7208 1.2499 5 6 3.5710 -0.7359 1.2356 6 1 3.9381 -1.2852 2.1026 7 7 4.0746 0.6392 1.2781 8 6 5.3040 0.8918 1.7692 9 8 5.9954 -0.0217 2.1766 10 7 5.7674 2.1568 1.8078 11 6 7.1040 2.4312 2.3411 12 6 7.3783 3.9115 2.2718 13 8 6.5400 4.6631 1.8208 14 7 8.5551 4.4000 2.7109 15 6 8.8045 5.7467 2.6483 16 1 8.0577 6.4161 2.2475 17 6 10.0175 6.2504 3.1016 18 7 10.2567 7.5411 3.0411 19 14 11.3089 5.0927 3.7955 20 1 12.1956 4.6261 2.6995 21 1 12.1172 5.8073 4.8159 22 1 10.6405 3.9244 4.4228 23 6 4.0549 -1.4186 -0.0467 24 6 3.4865 -0.6776 -1.2590 25 7 2.0193 -0.6917 -1.1994 26 6 1.4373 -0.1106 -2.4165 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5134 0.8903 29 1 -0.3633 0.5142 -0.8897 30 1 1.6895 -0.1981 2.1400 31 1 1.6654 -1.7444 1.2580 32 1 3.5231 1.3679 0.9528 33 1 5.2163 2.8854 1.4818 34 1 7.1565 2.0997 3.3782 35 1 7.8478 1.8962 1.7506 36 1 9.2257 3.7989 3.0712 37 1 11.1036 7.8928 3.3571 38 1 3.7127 -2.4534 -0.0594 39 1 5.1440 -1.3944 -0.0832 40 1 3.8176 -1.1698 -2.1736 41 1 3.8403 0.3534 -1.2532 42 1 1.8130 -0.6443 -3.2895 43 1 0.3515 -0.1971 -2.3772 44 1 1.7156 0.9410 -2.4861 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258239483.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:44 Heat of formation + Delta-G solvation = -59.848936 kcal Electronic energy + Delta-G solvation = -24475.722212 eV Core-core repulsion = 20849.070317 eV Total energy + Delta-G solvation = -3626.651895 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53533 -39.19526 -38.26525 -35.23430 -34.44188 -33.72811 -32.72867 -31.85308 -31.55790 -27.99529 -27.29151 -26.39581 -24.31721 -23.17270 -21.72480 -21.13670 -19.71533 -19.29559 -18.75389 -18.13014 -16.24618 -16.16172 -15.77469 -15.62577 -15.52786 -15.00453 -14.82773 -14.67096 -14.34282 -14.03375 -13.86557 -13.45798 -13.13459 -12.80790 -12.70523 -12.48114 -12.36838 -12.19879 -12.16615 -12.11000 -11.99599 -11.60491 -11.31202 -11.24110 -10.89889 -10.64539 -10.44394 -10.09525 -10.05707 -9.70365 -9.20257 -8.77335 -8.71884 -8.56553 -8.31014 -6.41434 -3.94060 2.76627 2.99514 3.04243 3.12332 3.33718 3.57396 3.58246 4.03104 4.28932 4.40879 4.47213 4.61745 4.64973 4.87794 4.93278 5.04444 5.13090 5.13811 5.21157 5.26157 5.36948 5.41230 5.51085 5.57155 5.64530 5.67424 5.70949 5.78423 5.79417 5.85708 5.88083 5.92132 6.01787 6.53920 6.64614 6.76632 6.80995 7.04021 7.44528 7.99726 8.17416 8.43930 8.74383 8.81124 9.29321 9.63113 10.70775 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.029391 B = 0.002729 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.444521 B =10257.613535 C =10616.645299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.078 3.922 3 H 0.040 0.960 4 C -0.119 4.119 5 C 0.163 3.837 6 H 0.091 0.909 7 N -0.744 5.744 8 C 0.706 3.294 9 O -0.597 6.597 10 N -0.726 5.726 11 C 0.127 3.873 12 C 0.438 3.562 13 O -0.580 6.580 14 N -0.576 5.576 15 C -0.310 4.310 16 H 0.121 0.879 17 C 0.045 3.955 18 N -0.875 5.875 19 Si 0.879 3.121 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.266 1.266 23 C -0.128 4.128 24 C 0.056 3.944 25 N -0.537 5.537 26 C 0.020 3.980 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.393 0.607 33 H 0.407 0.593 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.375 0.625 37 H 0.276 0.724 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.036 0.964 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.261 -18.018 -6.245 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 H 0.058 0.942 4 C -0.157 4.157 5 C 0.057 3.943 6 H 0.109 0.891 7 N -0.400 5.400 8 C 0.405 3.595 9 O -0.476 6.476 10 N -0.384 5.384 11 C -0.002 4.002 12 C 0.224 3.776 13 O -0.464 6.464 14 N -0.214 5.214 15 C -0.439 4.439 16 H 0.139 0.861 17 C -0.159 4.159 18 N -0.514 5.514 19 Si 0.705 3.295 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.192 1.192 23 C -0.167 4.167 24 C -0.071 4.071 25 N -0.262 5.262 26 C -0.128 4.128 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.227 0.773 33 H 0.244 0.756 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.208 0.792 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -16.153 -18.621 -6.086 25.391 hybrid contribution 0.987 0.895 0.170 1.343 sum -15.167 -17.726 -5.916 24.067 Atomic orbital electron populations 1.21923 0.94081 1.02668 1.01926 1.21627 0.95566 0.95357 0.90451 0.94246 1.21954 0.94105 1.02571 0.97087 1.20813 0.92856 0.81818 0.98766 0.89061 1.45243 1.16682 1.09474 1.68630 1.15862 0.81704 0.83163 0.78723 1.90896 1.57901 1.44079 1.54767 1.44769 1.18542 1.07325 1.67721 1.20791 0.84137 0.95126 1.00152 1.19672 0.83934 0.88915 0.85035 1.90532 1.46155 1.59194 1.50567 1.42116 1.14672 1.08879 1.55741 1.19436 1.02987 0.81226 1.40214 0.86123 1.25066 0.97468 0.96034 0.97342 1.69614 1.24888 1.11419 1.45457 0.86667 0.82188 0.80776 0.79851 1.19387 1.19985 1.19178 1.21996 1.01118 0.99811 0.93755 1.22068 0.86677 0.99420 0.98984 1.61987 1.07428 1.54819 1.02008 1.22426 1.00617 0.97375 0.92362 0.91643 0.92023 0.92357 0.90661 0.89420 0.77281 0.75615 0.89907 0.89937 0.79218 0.91382 0.90306 0.90640 0.90798 0.94609 0.91487 0.90932 0.95654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.76 37.16 0.33 -0.62 16 2 C 0.08 0.61 2.28 -67.73 -0.15 0.45 16 3 H 0.04 0.33 6.64 -51.92 -0.34 -0.01 16 4 C -0.12 -0.92 5.04 -26.65 -0.13 -1.06 16 5 C 0.16 1.65 2.81 -67.80 -0.19 1.46 16 6 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 7 N -0.74 -8.59 4.35 -58.55 -0.25 -8.84 16 8 C 0.71 10.90 8.54 -86.92 -0.74 10.16 16 9 O -0.60 -11.04 16.01 5.29 0.08 -10.96 16 10 N -0.73 -11.70 5.53 -66.41 -0.37 -12.07 16 11 C 0.13 2.22 6.15 -5.19 -0.03 2.19 16 12 C 0.44 9.66 7.85 -10.99 -0.09 9.58 16 13 O -0.58 -14.65 15.24 5.55 0.08 -14.56 16 14 N -0.58 -13.43 5.09 -10.96 -0.06 -13.49 16 15 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 16 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 17 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 18 N -0.87 -25.00 13.96 55.50 0.77 -24.23 16 19 Si 0.88 19.03 27.74 -169.99 -4.71 14.32 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 23 C -0.13 -1.26 5.76 -26.65 -0.15 -1.41 16 24 C 0.06 0.52 5.32 -3.84 -0.02 0.50 16 25 N -0.54 -4.49 4.75 -234.93 -1.12 -5.61 16 26 C 0.02 0.15 9.06 60.06 0.54 0.69 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.35 6.32 -51.93 -0.33 0.03 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.39 3.95 7.02 -40.82 -0.29 3.66 16 33 H 0.41 6.46 7.45 -40.82 -0.30 6.15 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.37 7.71 5.76 -40.82 -0.24 7.48 16 37 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.65 8.09 -51.92 -0.42 0.23 16 41 H 0.04 0.37 7.69 -51.93 -0.40 -0.03 16 42 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 43 H 0.07 0.46 6.20 -51.93 -0.32 0.14 16 44 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 350.43 15.07 5.28 5.28 Total: -1.00 -32.26 350.43 -7.99 -40.25 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -6.81 Total: 15.57 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: -0.89 Total: 14.34 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: -1.02 Total: -64.23 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: 0.17 Total: -25.52 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.32 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.26 -7.99 -40.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258239483.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.601 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds