Wall clock time and date at job start Tue Mar 31 2020 04:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.45350 * 2 1 4 4 C 1.53032 * 109.46482 * 119.96893 * 2 1 3 5 5 C 1.53123 * 109.28121 * 179.19636 * 4 2 1 6 6 H 1.09002 * 109.52604 * 182.38110 * 5 4 2 7 7 N 1.46501 * 109.52078 * 62.25444 * 5 4 2 8 8 C 1.34779 * 120.00236 * 155.00101 * 7 5 4 9 9 O 1.21588 * 119.99579 * 0.02562 * 8 7 5 10 10 N 1.34774 * 119.99986 * 179.97438 * 8 7 5 11 11 C 1.46502 * 119.99756 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.46889 * 179.97438 * 11 10 8 13 13 O 1.21293 * 120.00014 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99827 * 179.97438 * 12 11 10 15 15 C 1.37100 * 119.99992 * 180.02562 * 14 12 11 16 16 H 1.07994 * 120.00103 * 0.02562 * 15 14 12 17 17 C 1.38952 * 119.99843 * 179.97438 * 15 14 12 18 18 N 1.31408 * 119.99854 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00141 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47334 * 89.99692 * 19 17 15 21 21 H 1.48505 * 109.46762 * 209.99870 * 19 17 15 22 22 H 1.48497 * 109.47092 * 329.99644 * 19 17 15 23 23 C 1.53124 * 109.16220 * 302.35028 * 5 4 2 24 24 C 1.53035 * 109.27475 * 57.64849 * 23 5 4 25 25 N 1.46846 * 109.52744 * 300.82106 * 24 23 5 26 26 C 1.46898 * 111.00056 * 185.84176 * 25 24 23 27 27 H 1.09000 * 109.46710 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47188 * 299.96956 * 1 2 3 29 29 H 1.08998 * 109.47175 * 59.97561 * 1 2 3 30 30 H 1.09001 * 109.50949 * 299.14218 * 4 2 1 31 31 H 1.09005 * 109.50313 * 59.22075 * 4 2 1 32 32 H 0.97004 * 119.99759 * 335.00003 * 7 5 4 33 33 H 0.96998 * 120.00432 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.47102 * 300.00139 * 11 10 8 35 35 H 1.09000 * 109.47479 * 60.00013 * 11 10 8 36 36 H 0.96998 * 120.00285 * 0.02562 * 14 12 11 37 37 H 0.96996 * 120.00526 * 180.02562 * 18 17 15 38 38 H 1.08993 * 109.50112 * 297.71243 * 23 5 4 39 39 H 1.08992 * 109.50394 * 177.58991 * 23 5 4 40 40 H 1.09008 * 109.45841 * 180.80263 * 24 23 5 41 41 H 1.09003 * 109.46290 * 60.84246 * 24 23 5 42 42 H 1.08997 * 109.47063 * 56.04360 * 26 25 24 43 43 H 1.08993 * 109.47414 * 176.04888 * 26 25 24 44 44 H 1.09004 * 109.47400 * 296.04746 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0279 0.0000 4 6 2.0399 -0.7208 1.2499 5 6 3.5710 -0.7359 1.2356 6 1 3.9381 -1.2852 2.1026 7 7 4.0746 0.6392 1.2781 8 6 5.3040 0.8918 1.7692 9 8 5.9954 -0.0217 2.1766 10 7 5.7674 2.1568 1.8078 11 6 7.1040 2.4312 2.3411 12 6 7.3783 3.9115 2.2718 13 8 6.5400 4.6631 1.8208 14 7 8.5551 4.4000 2.7109 15 6 8.8045 5.7467 2.6483 16 1 8.0577 6.4161 2.2475 17 6 10.0175 6.2504 3.1016 18 7 10.2567 7.5411 3.0411 19 14 11.3089 5.0927 3.7955 20 1 12.1956 4.6261 2.6995 21 1 12.1172 5.8073 4.8159 22 1 10.6405 3.9244 4.4228 23 6 4.0549 -1.4186 -0.0467 24 6 3.4865 -0.6776 -1.2590 25 7 2.0193 -0.6917 -1.1994 26 6 1.4373 -0.1106 -2.4165 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5134 0.8903 29 1 -0.3633 0.5142 -0.8897 30 1 1.6895 -0.1981 2.1400 31 1 1.6654 -1.7444 1.2580 32 1 3.5231 1.3679 0.9528 33 1 5.2163 2.8854 1.4818 34 1 7.1565 2.0997 3.3782 35 1 7.8478 1.8962 1.7506 36 1 9.2257 3.7989 3.0712 37 1 11.1036 7.8928 3.3571 38 1 3.7127 -2.4534 -0.0594 39 1 5.1440 -1.3944 -0.0832 40 1 3.8176 -1.1698 -2.1736 41 1 3.8403 0.3534 -1.2532 42 1 1.8130 -0.6443 -3.2895 43 1 0.3515 -0.1971 -2.3772 44 1 1.7156 0.9410 -2.4861 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258239483.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:42 Heat of formation + Delta-G solvation = -86.088160 kcal Electronic energy + Delta-G solvation = -24476.860030 eV Core-core repulsion = 20849.070317 eV Total energy + Delta-G solvation = -3627.789713 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.57206 -40.51939 -39.69607 -36.37193 -36.02186 -35.28153 -33.84816 -33.37373 -32.55098 -29.33328 -28.13794 -27.11796 -26.13174 -23.88568 -22.61716 -22.12276 -21.47785 -20.68908 -20.04384 -19.55442 -17.48147 -17.38687 -16.99261 -16.71824 -16.68324 -16.36508 -15.94592 -15.82575 -15.66565 -15.12356 -14.95703 -14.81940 -14.38425 -14.21477 -14.00183 -13.68035 -13.51197 -13.33003 -12.98193 -12.92323 -12.77432 -12.61221 -12.45379 -12.35539 -12.00728 -11.94608 -11.64840 -11.58836 -11.38596 -11.14177 -10.66447 -10.40373 -10.32341 -9.84197 -9.26180 -8.46394 -6.08470 1.30902 1.33783 1.43476 1.59844 1.78043 2.12519 2.20006 2.78173 2.93918 3.09978 3.28907 3.71077 3.79574 3.96499 3.99041 4.14165 4.28355 4.36094 4.41095 4.43924 4.48367 4.55570 4.62842 4.76511 4.80086 4.90769 4.92783 4.99652 5.04887 5.08361 5.18764 5.21942 5.29177 5.40017 5.47989 5.59989 5.87209 5.92137 6.11733 6.16582 6.48084 6.77209 6.99356 7.27709 7.52848 7.77326 8.70087 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.029391 B = 0.002729 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.444521 B =10257.613535 C =10616.645299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 H 0.032 0.968 4 C -0.110 4.110 5 C 0.160 3.840 6 H 0.078 0.922 7 N -0.728 5.728 8 C 0.707 3.293 9 O -0.626 6.626 10 N -0.729 5.729 11 C 0.139 3.861 12 C 0.446 3.554 13 O -0.615 6.615 14 N -0.578 5.578 15 C -0.331 4.331 16 H 0.063 0.937 17 C -0.008 4.008 18 N -0.926 5.926 19 Si 0.959 3.041 20 H -0.256 1.256 21 H -0.273 1.273 22 H -0.232 1.232 23 C -0.122 4.122 24 C 0.060 3.940 25 N -0.539 5.539 26 C 0.020 3.980 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.402 0.598 33 H 0.408 0.592 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.392 0.608 37 H 0.281 0.719 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.021 0.979 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.586 -20.681 -5.818 27.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 H 0.050 0.950 4 C -0.148 4.148 5 C 0.055 3.945 6 H 0.096 0.904 7 N -0.385 5.385 8 C 0.406 3.594 9 O -0.508 6.508 10 N -0.386 5.386 11 C 0.011 3.989 12 C 0.233 3.767 13 O -0.501 6.501 14 N -0.217 5.217 15 C -0.460 4.460 16 H 0.081 0.919 17 C -0.208 4.208 18 N -0.566 5.566 19 Si 0.779 3.221 20 H -0.181 1.181 21 H -0.198 1.198 22 H -0.156 1.156 23 C -0.161 4.161 24 C -0.068 4.068 25 N -0.264 5.264 26 C -0.128 4.128 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.238 0.762 33 H 0.245 0.755 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.228 0.772 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.039 0.961 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -16.532 -21.306 -5.677 27.558 hybrid contribution 0.944 1.758 -0.046 1.996 sum -15.589 -19.547 -5.724 25.649 Atomic orbital electron populations 1.21887 0.92743 1.03007 1.02500 1.21690 0.96612 0.94822 0.90136 0.94973 1.21911 0.91961 1.03415 0.97503 1.20955 0.94493 0.80644 0.98368 0.90386 1.45196 1.15406 1.10562 1.67295 1.15926 0.82443 0.82351 0.78635 1.90876 1.58980 1.44701 1.56197 1.44742 1.18158 1.07739 1.67997 1.20680 0.85394 0.91114 1.01759 1.20514 0.82777 0.90734 0.82660 1.90521 1.47225 1.60929 1.51441 1.41918 1.15730 1.07462 1.56640 1.19026 1.02637 0.82682 1.41701 0.91882 1.26068 0.99726 0.97997 0.96991 1.69775 1.26070 1.14078 1.46660 0.85443 0.78385 0.79015 0.79282 1.18088 1.19808 1.15560 1.21918 0.99744 1.00579 0.93867 1.21997 0.87464 0.98457 0.98865 1.62020 1.06640 1.55067 1.02676 1.22476 1.01310 0.96998 0.92047 0.91367 0.91285 0.92030 0.89887 0.88329 0.76236 0.75526 0.88080 0.88111 0.77201 0.90901 0.89138 0.92808 0.90328 0.96053 0.91046 0.89741 0.96224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.76 71.98 0.63 -0.86 16 2 C 0.08 1.03 2.28 44.94 0.10 1.13 16 3 H 0.03 0.49 6.64 -2.38 -0.02 0.47 16 4 C -0.11 -1.48 5.04 30.65 0.15 -1.32 16 5 C 0.16 3.04 2.81 45.07 0.13 3.16 16 6 H 0.08 1.73 7.58 -2.39 -0.02 1.71 16 7 N -0.73 -16.03 4.35 -457.41 -1.99 -18.02 16 8 C 0.71 20.99 8.54 179.05 1.53 22.52 16 9 O -0.63 -22.34 16.01 -3.99 -0.06 -22.40 16 10 N -0.73 -22.65 5.53 -482.29 -2.67 -25.31 16 11 C 0.14 4.62 6.15 85.63 0.53 5.15 16 12 C 0.45 19.48 7.85 87.66 0.69 20.17 16 13 O -0.62 -31.72 15.24 -3.07 -0.05 -31.77 16 14 N -0.58 -26.61 5.09 -306.99 -1.56 -28.17 16 15 C -0.33 -18.84 10.16 84.04 0.85 -17.99 16 16 H 0.06 4.23 7.39 -2.91 -0.02 4.21 16 17 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 18 N -0.93 -54.45 13.96 21.66 0.30 -54.15 16 19 Si 0.96 38.13 27.74 68.60 1.90 40.03 16 20 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.23 -7.89 6.52 99.48 0.65 -7.24 16 23 C -0.12 -2.27 5.76 30.65 0.18 -2.10 16 24 C 0.06 1.04 5.32 86.33 0.46 1.50 16 25 N -0.54 -8.05 4.75 -897.18 -4.26 -12.31 16 26 C 0.02 0.25 9.06 127.69 1.16 1.41 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.61 6.32 -2.39 -0.02 0.59 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.40 7.62 7.02 -92.71 -0.65 6.97 16 33 H 0.41 12.71 7.45 -92.71 -0.69 12.02 16 34 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 36 H 0.39 15.17 5.76 -92.71 -0.53 14.64 16 37 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.28 8.09 -2.38 -0.02 1.26 16 41 H 0.02 0.43 7.69 -2.39 -0.02 0.41 16 42 H 0.07 0.85 8.10 -2.39 -0.02 0.83 16 43 H 0.08 0.88 6.20 -2.39 -0.01 0.87 16 44 H 0.02 0.27 8.14 -2.39 -0.02 0.25 16 Total: -1.00 -72.41 350.43 -2.41 -74.82 By element: Atomic # 1 Polarization: 45.37 SS G_CDS: -0.90 Total: 44.47 kcal Atomic # 6 Polarization: 25.93 SS G_CDS: 6.87 Total: 32.81 kcal Atomic # 7 Polarization: -127.79 SS G_CDS: -10.18 Total: -137.96 kcal Atomic # 8 Polarization: -54.06 SS G_CDS: -0.11 Total: -54.17 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 1.90 Total: 40.03 kcal Total: -72.41 -2.41 -74.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258239483.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.268 kcal (2) G-P(sol) polarization free energy of solvation -72.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds