Wall clock time and date at job start Tue Mar 31 2020 03:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47146 * 2 1 4 4 O 1.42894 * 109.47076 * 120.00520 * 2 1 3 5 5 C 1.52999 * 109.46742 * 240.00606 * 2 1 3 6 6 N 1.46503 * 109.46876 * 180.02562 * 5 2 1 7 7 C 1.46504 * 119.99932 * 269.99883 * 6 5 2 8 8 C 1.34780 * 120.00091 * 89.99825 * 6 5 2 9 9 O 1.21348 * 119.99772 * 3.55288 * 8 6 5 10 10 C 1.49446 * 120.00082 * 183.55045 * 8 6 5 11 11 O 1.21349 * 119.99996 * 6.22067 * 10 8 6 12 12 N 1.34772 * 120.00129 * 186.22511 * 10 8 6 13 13 C 1.46927 * 120.63081 * 355.42605 * 12 10 8 14 14 C 1.53188 * 108.77614 * 126.41144 * 13 12 10 15 15 C 1.53042 * 109.33904 * 54.61942 * 14 13 12 16 16 C 1.53037 * 109.54134 * 298.68481 * 15 14 13 17 17 H 1.09010 * 109.49487 * 301.34674 * 16 15 14 18 18 C 1.50701 * 109.50031 * 181.28576 * 16 15 14 19 19 H 1.07999 * 119.99576 * 0.05605 * 18 16 15 20 20 C 1.37873 * 119.99992 * 180.34216 * 18 16 15 21 21 N 1.31512 * 119.99854 * 359.71429 * 20 18 16 22 22 Si 1.86797 * 119.99889 * 179.72341 * 20 18 16 23 23 H 1.48503 * 109.47148 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47200 * 119.99536 * 22 20 18 25 25 H 1.48507 * 109.47108 * 239.99582 * 22 20 18 26 26 C 1.46926 * 120.63175 * 175.44442 * 12 10 8 27 27 H 1.08998 * 109.47380 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47162 * 299.99580 * 1 2 3 29 29 H 1.09001 * 109.47478 * 59.99552 * 1 2 3 30 30 H 0.96708 * 114.00048 * 60.00028 * 4 2 1 31 31 H 1.09002 * 109.47396 * 60.00250 * 5 2 1 32 32 H 1.09004 * 109.47258 * 299.99737 * 5 2 1 33 33 H 1.09000 * 109.46914 * 263.78139 * 7 6 5 34 34 H 1.09000 * 109.46577 * 23.77959 * 7 6 5 35 35 H 1.09000 * 109.46840 * 143.78220 * 7 6 5 36 36 H 1.09003 * 109.58432 * 246.19885 * 13 12 10 37 37 H 1.08995 * 109.58606 * 6.62278 * 13 12 10 38 38 H 1.09004 * 109.49764 * 174.58365 * 14 13 12 39 39 H 1.09001 * 109.50238 * 294.68449 * 14 13 12 40 40 H 1.09003 * 109.48629 * 178.64081 * 15 14 13 41 41 H 1.09008 * 109.43362 * 58.68918 * 15 14 13 42 42 H 0.97007 * 119.99581 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.58482 * 113.80092 * 26 12 10 44 44 H 1.08999 * 109.70685 * 353.44755 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0399 -0.7211 -1.2493 6 7 3.5049 -0.7217 -1.2491 7 6 4.2380 0.3770 -1.8830 8 6 4.1784 -1.7329 -0.6655 9 8 3.5729 -2.6746 -0.1973 10 6 5.6707 -1.6945 -0.5952 11 8 6.2700 -0.7045 -0.9604 12 7 6.3508 -2.7593 -0.1264 13 6 5.6374 -3.9254 0.4121 14 6 6.1322 -5.1827 -0.3097 15 6 7.6557 -5.2684 -0.1917 16 6 8.2903 -4.0462 -0.8591 17 1 7.9899 -4.0064 -1.9062 18 6 9.7913 -4.1472 -0.7701 19 1 10.2475 -4.9984 -0.2868 20 6 10.5820 -3.1499 -1.3005 21 7 10.0264 -2.1134 -1.8890 22 14 12.4423 -3.2713 -1.1833 23 1 12.8132 -4.5251 -0.4791 24 1 13.0249 -3.2794 -2.5493 25 1 12.9679 -2.1057 -0.4280 26 6 7.8199 -2.7760 -0.1436 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.7209 -1.5954 1.2327 31 1 1.6766 -0.2072 -2.1393 32 1 1.6766 -1.7488 -1.2494 33 1 4.5161 0.0906 -2.8973 34 1 3.6055 1.2641 -1.9165 35 1 5.1376 0.5936 -1.3070 36 1 5.8369 -4.0148 1.4800 37 1 4.5666 -3.8069 0.2470 38 1 5.6819 -6.0647 0.1457 39 1 5.8516 -5.1325 -1.3618 40 1 8.0081 -6.1749 -0.6839 41 1 7.9370 -5.2943 0.8611 42 1 10.5827 -1.4119 -2.2625 43 1 8.1974 -2.7716 0.8790 44 1 8.1913 -1.8991 -0.6738 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327280528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:18 Heat of formation + Delta-G solvation = -95.133343 kcal Electronic energy + Delta-G solvation = -25817.390298 eV Core-core repulsion = 22156.915605 eV Total energy + Delta-G solvation = -3660.474693 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.68070 -38.67222 -37.38223 -36.98773 -35.20370 -33.21219 -31.74987 -31.48752 -29.72898 -27.70241 -26.86444 -25.24731 -24.72577 -22.64579 -21.77867 -21.38101 -19.68659 -18.58610 -17.14172 -16.87930 -16.51943 -16.02477 -15.81205 -15.72299 -15.15419 -14.60715 -14.45143 -14.31988 -13.74378 -13.60985 -13.32104 -12.88905 -12.80017 -12.65246 -12.58133 -12.45791 -12.24621 -12.08809 -11.89440 -11.76507 -11.34708 -11.12284 -10.98262 -10.61450 -10.48376 -10.42245 -10.24188 -9.94839 -9.64835 -9.13178 -9.09903 -8.72675 -8.46355 -8.24081 -7.79286 -6.01675 -4.09590 1.85123 2.64562 3.29710 3.38089 3.41556 3.68068 3.84909 4.25673 4.42121 4.51963 4.63927 4.81545 4.87572 5.07681 5.25114 5.29052 5.36755 5.40719 5.67874 5.71174 5.71728 5.76625 5.84475 5.93825 6.11725 6.24962 6.34421 6.42293 6.59321 6.64541 6.74875 6.89757 7.00667 7.08751 7.19646 7.25218 7.57170 7.60769 7.83718 7.96606 8.01161 8.21304 8.37015 8.63713 8.94647 9.55961 11.03873 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.026398 B = 0.003974 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.433289 B = 7043.918715 C = 7768.350241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.086 3.914 3 H 0.098 0.902 4 O -0.555 6.555 5 C 0.077 3.923 6 N -0.584 5.584 7 C 0.053 3.947 8 C 0.520 3.480 9 O -0.519 6.519 10 C 0.497 3.503 11 O -0.520 6.520 12 N -0.564 5.564 13 C 0.046 3.954 14 C -0.130 4.130 15 C -0.113 4.113 16 C 0.041 3.959 17 H 0.029 0.971 18 C -0.518 4.518 19 H 0.060 0.940 20 C 0.062 3.938 21 N -0.882 5.882 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.108 3.892 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.378 0.622 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.124 0.876 36 H 0.056 0.944 37 H 0.149 0.851 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.263 0.737 43 H 0.047 0.953 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.196 3.248 1.481 18.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.025 3.975 3 H 0.116 0.884 4 O -0.361 6.361 5 C -0.046 4.046 6 N -0.316 5.316 7 C -0.088 4.088 8 C 0.306 3.694 9 O -0.398 6.398 10 C 0.279 3.721 11 O -0.399 6.399 12 N -0.296 5.296 13 C -0.076 4.076 14 C -0.168 4.168 15 C -0.151 4.151 16 C 0.022 3.978 17 H 0.047 0.953 18 C -0.557 4.557 19 H 0.078 0.922 20 C -0.141 4.141 21 N -0.520 5.520 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.012 4.012 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.226 0.774 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.141 0.859 36 H 0.074 0.926 37 H 0.165 0.835 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.838 4.027 1.544 18.352 hybrid contribution 0.782 -0.520 -0.212 0.963 sum -17.056 3.507 1.332 17.464 Atomic orbital electron populations 1.22445 0.95893 1.02811 1.02892 1.22306 0.92843 0.97106 0.85205 0.88420 1.86595 1.77266 1.29373 1.42838 1.22373 0.80182 1.03049 0.98997 1.47602 1.06004 1.23002 1.54979 1.22643 0.99210 0.87545 0.99445 1.20624 0.89419 0.81804 0.77586 1.90166 1.69795 1.32461 1.47384 1.19731 0.87243 0.84630 0.80542 1.90572 1.69361 1.30874 1.49064 1.48457 1.09330 1.15095 1.56673 1.23217 1.02575 0.84811 0.96967 1.21898 0.97942 0.96670 1.00275 1.21665 0.92853 1.00177 1.00398 1.18968 0.94889 0.88842 0.95121 0.95329 1.21138 0.90335 1.06450 1.37737 0.92221 1.25057 0.98818 0.95377 0.94831 1.69884 1.35104 1.09632 1.37387 0.86516 0.85604 0.78026 0.77746 1.19780 1.21016 1.20950 1.22472 0.73073 1.05281 1.00391 0.92029 0.91497 0.91516 0.77353 0.89402 0.89234 0.92405 0.92090 0.85882 0.92593 0.83470 0.92293 0.92569 0.93149 0.93242 0.92720 0.93449 0.85845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 9.53 37.16 0.35 -0.86 16 2 C 0.09 0.81 3.86 -26.73 -0.10 0.71 16 3 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 4 O -0.55 -6.83 12.22 -39.04 -0.48 -7.31 16 5 C 0.08 0.77 5.14 -4.04 -0.02 0.74 16 6 N -0.58 -8.02 2.83 -182.08 -0.51 -8.53 16 7 C 0.05 0.69 9.76 59.85 0.58 1.28 16 8 C 0.52 8.82 7.11 -11.59 -0.08 8.74 16 9 O -0.52 -8.60 11.61 1.69 0.02 -8.58 16 10 C 0.50 10.21 7.65 -11.59 -0.09 10.12 16 11 O -0.52 -11.67 12.53 5.50 0.07 -11.60 16 12 N -0.56 -11.99 2.97 -173.28 -0.52 -12.50 16 13 C 0.05 0.83 6.27 -3.71 -0.02 0.81 16 14 C -0.13 -2.33 6.08 -26.61 -0.16 -2.49 16 15 C -0.11 -2.36 5.11 -26.69 -0.14 -2.50 16 16 C 0.04 1.03 2.25 -91.66 -0.21 0.82 16 17 H 0.03 0.80 8.14 -51.92 -0.42 0.37 16 18 C -0.52 -14.09 8.57 -34.44 -0.30 -14.39 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 21 N -0.88 -25.37 11.38 55.43 0.63 -24.73 16 22 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 C 0.11 2.64 5.38 -3.71 -0.02 2.62 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.38 3.96 8.56 45.56 0.39 4.35 16 31 H 0.09 0.65 8.07 -51.93 -0.42 0.23 16 32 H 0.09 0.91 7.37 -51.93 -0.38 0.52 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.59 8.02 -51.93 -0.42 0.17 16 35 H 0.12 1.98 5.04 -52.54 -0.26 1.72 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.15 2.58 3.71 -57.19 -0.21 2.37 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.12 3.45 5.15 -51.93 -0.27 3.18 16 LS Contribution 346.10 15.07 5.22 5.22 Total: -1.00 -30.85 346.10 -7.07 -37.92 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.19 Total: 6.74 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -0.29 Total: 7.20 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.40 Total: -45.77 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.39 Total: -27.49 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.85 -7.07 -37.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327280528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.211 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds