Wall clock time and date at job start Tue Mar 31 2020 03:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47146 * 2 1 4 4 O 1.42894 * 109.47076 * 120.00520 * 2 1 3 5 5 C 1.52999 * 109.46742 * 240.00606 * 2 1 3 6 6 N 1.46503 * 109.46876 * 180.02562 * 5 2 1 7 7 C 1.46504 * 119.99932 * 269.99883 * 6 5 2 8 8 C 1.34780 * 120.00091 * 89.99825 * 6 5 2 9 9 O 1.21348 * 119.99772 * 3.55288 * 8 6 5 10 10 C 1.49446 * 120.00082 * 183.55045 * 8 6 5 11 11 O 1.21349 * 119.99996 * 6.22067 * 10 8 6 12 12 N 1.34772 * 120.00129 * 186.22511 * 10 8 6 13 13 C 1.46927 * 120.63081 * 355.42605 * 12 10 8 14 14 C 1.53188 * 108.77614 * 126.41144 * 13 12 10 15 15 C 1.53042 * 109.33904 * 54.61942 * 14 13 12 16 16 C 1.53037 * 109.54134 * 298.68481 * 15 14 13 17 17 H 1.09010 * 109.49487 * 301.34674 * 16 15 14 18 18 C 1.50701 * 109.50031 * 181.28576 * 16 15 14 19 19 H 1.07999 * 119.99576 * 0.05605 * 18 16 15 20 20 C 1.37873 * 119.99992 * 180.34216 * 18 16 15 21 21 N 1.31512 * 119.99854 * 359.71429 * 20 18 16 22 22 Si 1.86797 * 119.99889 * 179.72341 * 20 18 16 23 23 H 1.48503 * 109.47148 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47200 * 119.99536 * 22 20 18 25 25 H 1.48507 * 109.47108 * 239.99582 * 22 20 18 26 26 C 1.46926 * 120.63175 * 175.44442 * 12 10 8 27 27 H 1.08998 * 109.47380 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47162 * 299.99580 * 1 2 3 29 29 H 1.09001 * 109.47478 * 59.99552 * 1 2 3 30 30 H 0.96708 * 114.00048 * 60.00028 * 4 2 1 31 31 H 1.09002 * 109.47396 * 60.00250 * 5 2 1 32 32 H 1.09004 * 109.47258 * 299.99737 * 5 2 1 33 33 H 1.09000 * 109.46914 * 263.78139 * 7 6 5 34 34 H 1.09000 * 109.46577 * 23.77959 * 7 6 5 35 35 H 1.09000 * 109.46840 * 143.78220 * 7 6 5 36 36 H 1.09003 * 109.58432 * 246.19885 * 13 12 10 37 37 H 1.08995 * 109.58606 * 6.62278 * 13 12 10 38 38 H 1.09004 * 109.49764 * 174.58365 * 14 13 12 39 39 H 1.09001 * 109.50238 * 294.68449 * 14 13 12 40 40 H 1.09003 * 109.48629 * 178.64081 * 15 14 13 41 41 H 1.09008 * 109.43362 * 58.68918 * 15 14 13 42 42 H 0.97007 * 119.99581 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.58482 * 113.80092 * 26 12 10 44 44 H 1.08999 * 109.70685 * 353.44755 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0399 -0.7211 -1.2493 6 7 3.5049 -0.7217 -1.2491 7 6 4.2380 0.3770 -1.8830 8 6 4.1784 -1.7329 -0.6655 9 8 3.5729 -2.6746 -0.1973 10 6 5.6707 -1.6945 -0.5952 11 8 6.2700 -0.7045 -0.9604 12 7 6.3508 -2.7593 -0.1264 13 6 5.6374 -3.9254 0.4121 14 6 6.1322 -5.1827 -0.3097 15 6 7.6557 -5.2684 -0.1917 16 6 8.2903 -4.0462 -0.8591 17 1 7.9899 -4.0064 -1.9062 18 6 9.7913 -4.1472 -0.7701 19 1 10.2475 -4.9984 -0.2868 20 6 10.5820 -3.1499 -1.3005 21 7 10.0264 -2.1134 -1.8890 22 14 12.4423 -3.2713 -1.1833 23 1 12.8132 -4.5251 -0.4791 24 1 13.0249 -3.2794 -2.5493 25 1 12.9679 -2.1057 -0.4280 26 6 7.8199 -2.7760 -0.1436 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.7209 -1.5954 1.2327 31 1 1.6766 -0.2072 -2.1393 32 1 1.6766 -1.7488 -1.2494 33 1 4.5161 0.0906 -2.8973 34 1 3.6055 1.2641 -1.9165 35 1 5.1376 0.5936 -1.3070 36 1 5.8369 -4.0148 1.4800 37 1 4.5666 -3.8069 0.2470 38 1 5.6819 -6.0647 0.1457 39 1 5.8516 -5.1325 -1.3618 40 1 8.0081 -6.1749 -0.6839 41 1 7.9370 -5.2943 0.8611 42 1 10.5827 -1.4119 -2.2625 43 1 8.1974 -2.7716 0.8790 44 1 8.1913 -1.8991 -0.6738 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327280528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:18 Heat of formation + Delta-G solvation = -117.263350 kcal Electronic energy + Delta-G solvation = -25818.349927 eV Core-core repulsion = 22156.915605 eV Total energy + Delta-G solvation = -3661.434322 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.07221 -40.03413 -38.65298 -38.39344 -36.40835 -35.12548 -33.45025 -32.29570 -31.56870 -28.60224 -28.18376 -27.11597 -26.21382 -23.92270 -23.42221 -22.45895 -21.19458 -20.18572 -18.62818 -18.29229 -17.85070 -17.50844 -17.23300 -16.88734 -16.50795 -16.14471 -15.79439 -15.56648 -15.34631 -14.88092 -14.70853 -14.53917 -14.41507 -13.99397 -13.84291 -13.52511 -13.48184 -13.25380 -13.02400 -12.92236 -12.86752 -12.61725 -12.38228 -12.29829 -12.11682 -11.88867 -11.71070 -11.39030 -11.23788 -11.04728 -10.90714 -10.55266 -9.90553 -9.67992 -9.47238 -8.12364 -6.28758 0.40721 1.34937 1.41830 1.42403 1.54184 2.19361 2.40282 2.48113 3.14130 3.20785 3.53169 3.81716 4.07889 4.10508 4.19209 4.19364 4.34266 4.40041 4.45847 4.58954 4.59905 4.72365 4.75914 4.82009 4.86613 4.92003 5.03160 5.11093 5.14064 5.18977 5.24502 5.29188 5.32287 5.41725 5.55679 5.62855 5.84277 5.91948 5.97452 6.28749 6.44669 6.75649 6.81925 6.83555 7.04508 7.40989 8.91769 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.026398 B = 0.003974 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.433289 B = 7043.918715 C = 7768.350241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.084 3.916 3 H 0.096 0.904 4 O -0.581 6.581 5 C 0.075 3.925 6 N -0.574 5.574 7 C 0.054 3.946 8 C 0.522 3.478 9 O -0.517 6.517 10 C 0.483 3.517 11 O -0.549 6.549 12 N -0.574 5.574 13 C 0.046 3.954 14 C -0.122 4.122 15 C -0.107 4.107 16 C 0.040 3.960 17 H -0.010 1.010 18 C -0.536 4.536 19 H 0.061 0.939 20 C 0.011 3.989 21 N -0.914 5.914 22 Si 0.960 3.040 23 H -0.263 1.263 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.122 3.878 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.384 0.616 31 H 0.122 0.878 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.163 0.837 38 H 0.098 0.902 39 H 0.047 0.953 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.261 0.739 43 H 0.039 0.961 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.210 2.783 1.707 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.024 3.976 3 H 0.113 0.887 4 O -0.388 6.388 5 C -0.047 4.047 6 N -0.305 5.305 7 C -0.088 4.088 8 C 0.306 3.694 9 O -0.396 6.396 10 C 0.266 3.734 11 O -0.429 6.429 12 N -0.306 5.306 13 C -0.074 4.074 14 C -0.160 4.160 15 C -0.145 4.145 16 C 0.021 3.979 17 H 0.008 0.992 18 C -0.574 4.574 19 H 0.080 0.920 20 C -0.188 4.188 21 N -0.552 5.552 22 Si 0.785 3.215 23 H -0.187 1.187 24 H -0.207 1.207 25 H -0.207 1.207 26 C 0.000 4.000 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.233 0.767 31 H 0.140 0.860 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.179 0.821 38 H 0.116 0.884 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.902 3.555 1.769 20.294 hybrid contribution 1.355 -0.302 -0.312 1.423 sum -18.547 3.253 1.457 18.887 Atomic orbital electron populations 1.22351 0.93407 1.03549 1.03763 1.22434 0.94712 0.96505 0.83950 0.88654 1.86570 1.77991 1.30023 1.44255 1.22718 0.77135 1.03947 1.00859 1.47673 1.07755 1.21774 1.53271 1.22570 0.98994 0.88853 0.98380 1.19846 0.87482 0.83134 0.78974 1.90127 1.68929 1.32623 1.47963 1.20571 0.89383 0.83869 0.79581 1.90584 1.70747 1.31805 1.49787 1.48501 1.08133 1.16573 1.57346 1.23454 1.02916 0.83673 0.97396 1.21861 0.95723 0.98178 1.00195 1.21563 0.94861 0.98007 1.00062 1.18893 0.94451 0.91183 0.93360 0.99207 1.21512 0.91806 1.06484 1.37611 0.92040 1.25876 1.03462 0.94987 0.94490 1.70056 1.36614 1.10295 1.38251 0.85479 0.79992 0.78260 0.77766 1.18708 1.20694 1.20725 1.21916 0.75686 1.03429 0.98980 0.91375 0.91774 0.89489 0.76721 0.85951 0.89002 0.92577 0.87942 0.89190 0.91581 0.82131 0.88358 0.93452 0.92795 0.92678 0.92940 0.94281 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 9.53 71.98 0.69 -1.06 16 2 C 0.08 1.36 3.86 30.59 0.12 1.48 16 3 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 4 O -0.58 -13.41 12.22 -145.34 -1.78 -15.19 16 5 C 0.07 1.25 5.14 86.38 0.44 1.70 16 6 N -0.57 -14.88 2.83 -848.32 -2.40 -17.28 16 7 C 0.05 1.35 9.76 127.77 1.25 2.59 16 8 C 0.52 17.39 7.11 87.27 0.62 18.01 16 9 O -0.52 -16.36 11.61 0.40 0.00 -16.35 16 10 C 0.48 20.41 7.65 87.27 0.67 21.08 16 11 O -0.55 -25.95 12.53 -3.24 -0.04 -25.99 16 12 N -0.57 -25.00 2.97 -820.51 -2.44 -27.43 16 13 C 0.05 1.62 6.27 86.36 0.54 2.16 16 14 C -0.12 -4.18 6.08 30.67 0.19 -4.00 16 15 C -0.11 -4.44 5.11 30.62 0.16 -4.28 16 16 C 0.04 2.09 2.25 -11.46 -0.03 2.06 16 17 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 18 C -0.54 -29.85 8.57 25.60 0.22 -29.63 16 19 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 20 C 0.01 0.64 5.30 84.65 0.45 1.09 16 21 N -0.91 -54.70 11.38 21.45 0.24 -54.45 16 22 Si 0.96 44.23 29.54 68.60 2.03 46.25 16 23 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 26 C 0.12 6.24 5.38 86.36 0.46 6.71 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.38 7.44 8.56 -74.05 -0.63 6.81 16 31 H 0.12 1.27 8.07 -2.39 -0.02 1.25 16 32 H 0.09 1.57 7.37 -2.38 -0.02 1.55 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.10 1.70 8.02 -2.39 -0.02 1.68 16 35 H 0.09 2.97 5.04 -12.03 -0.06 2.91 16 36 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.16 5.36 3.71 -85.67 -0.32 5.04 16 38 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 42 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 43 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.09 5.09 5.15 -2.39 -0.01 5.07 16 Total: -1.00 -70.14 346.10 1.41 -68.73 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.01 Total: 23.81 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 5.78 Total: 17.91 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -4.59 Total: -99.17 kcal Atomic # 8 Polarization: -55.72 SS G_CDS: -1.81 Total: -57.53 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -70.14 1.41 -68.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327280528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.534 kcal (2) G-P(sol) polarization free energy of solvation -70.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds