Wall clock time and date at job start Tue Mar 31 2020 04:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86794 * 119.99945 * 2 1 4 4 H 1.48512 * 109.46759 * 240.00200 * 3 2 1 5 5 H 1.48496 * 109.47497 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47270 * 120.00547 * 3 2 1 7 7 C 1.38947 * 119.99619 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99946 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00513 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00284 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00238 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00237 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47096 * 179.97438 * 12 10 9 14 14 C 1.34782 * 119.99675 * 180.02562 * 13 12 10 15 15 O 1.21582 * 120.00071 * 4.97931 * 14 13 12 16 16 N 1.34774 * 119.99915 * 184.98301 * 14 13 12 17 17 C 1.46926 * 120.63121 * 174.77166 * 16 14 13 18 18 C 1.53195 * 108.89465 * 126.33965 * 17 16 14 19 19 C 1.53354 * 109.14570 * 54.57617 * 18 17 16 20 20 C 1.52998 * 109.41339 * 178.67370 * 19 18 17 21 21 C 1.53004 * 109.47599 * 295.12748 * 20 19 18 22 22 N 1.46894 * 109.47239 * 180.02562 * 21 20 19 23 23 C 1.53040 * 109.60905 * 298.70899 * 19 18 17 24 24 C 1.46926 * 120.63157 * 354.78914 * 16 14 13 25 25 H 0.96998 * 119.99713 * 359.97438 * 1 2 3 26 26 H 0.97006 * 119.99768 * 359.97438 * 9 7 2 27 27 H 1.09007 * 109.46781 * 60.00074 * 12 10 9 28 28 H 1.08998 * 109.47255 * 300.00439 * 12 10 9 29 29 H 0.96993 * 120.00686 * 359.97438 * 13 12 10 30 30 H 1.08999 * 109.58363 * 246.19988 * 17 16 14 31 31 H 1.09002 * 109.58625 * 6.48116 * 17 16 14 32 32 H 1.08997 * 109.49623 * 174.65400 * 18 17 16 33 33 H 1.09002 * 109.49577 * 294.75334 * 18 17 16 34 34 H 1.08994 * 109.42367 * 58.75582 * 19 18 17 35 35 H 1.09006 * 109.47442 * 55.13246 * 20 19 18 36 36 H 1.09001 * 109.47043 * 175.12891 * 20 19 18 37 37 H 1.08998 * 109.46811 * 300.00160 * 21 20 19 38 38 H 1.09001 * 109.46807 * 59.99998 * 21 20 19 39 39 H 1.00906 * 111.00055 * 180.02562 * 22 21 20 40 40 H 1.00899 * 111.00356 * 303.95301 * 22 21 20 41 41 H 1.08993 * 109.50186 * 301.42491 * 23 19 18 42 42 H 1.09004 * 109.52060 * 181.34332 * 23 19 18 43 43 H 1.09010 * 109.58451 * 353.37613 * 24 16 14 44 44 H 1.08999 * 109.58904 * 113.65827 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6963 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0011 12 6 1.2437 -4.8630 -0.0022 13 7 2.1957 -5.9765 -0.0027 14 6 1.7464 -7.2472 -0.0038 15 8 0.5548 -7.4706 -0.0957 16 7 2.6180 -8.2702 0.0972 17 6 2.1379 -9.6541 0.2124 18 6 2.8024 -10.5020 -0.8768 19 6 4.3250 -10.3509 -0.7729 20 6 4.9962 -11.2214 -1.8372 21 6 4.7114 -12.6958 -1.5442 22 7 5.3563 -13.5315 -2.5657 23 6 4.7120 -8.8868 -0.9934 24 6 4.0662 -8.0228 0.0944 25 1 -0.4849 0.8401 0.0004 26 1 0.3533 -2.3907 -0.0016 27 1 0.6174 -4.9205 -0.8925 28 1 0.6166 -4.9209 0.8875 29 1 3.1493 -5.7994 -0.0030 30 1 2.3982 -10.0505 1.1938 31 1 1.0557 -9.6773 0.0841 32 1 2.5272 -11.5480 -0.7421 33 1 2.4694 -10.1610 -1.8571 34 1 4.6541 -10.6686 0.2164 35 1 4.6011 -10.9633 -2.8198 36 1 6.0724 -11.0492 -1.8216 37 1 5.1065 -12.9539 -0.5617 38 1 3.6352 -12.8680 -1.5598 39 1 5.1825 -14.5106 -2.3945 40 1 5.0550 -13.2677 -3.4918 41 1 4.3613 -8.5611 -1.9726 42 1 5.7962 -8.7851 -0.9429 43 1 4.2567 -6.9700 -0.1142 44 1 4.4834 -8.2839 1.0670 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328731404.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:20 Heat of formation + Delta-G solvation = -77.009434 kcal Electronic energy + Delta-G solvation = -24077.328488 eV Core-core repulsion = 20449.932458 eV Total energy + Delta-G solvation = -3627.396030 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.39132 -38.59886 -37.88195 -35.70424 -34.49152 -33.74471 -33.07435 -31.40143 -31.17763 -28.96797 -27.29351 -24.80694 -24.36164 -23.22049 -21.93452 -20.67096 -19.65294 -19.43762 -18.35454 -17.82029 -16.29750 -16.02886 -15.81745 -15.53747 -15.41923 -15.00594 -14.56477 -14.48173 -14.39567 -14.12196 -13.85962 -13.64453 -13.42656 -13.33779 -12.91985 -12.50208 -12.14106 -11.99702 -11.90864 -11.62379 -11.48548 -11.43904 -11.10588 -11.06256 -10.69845 -10.55328 -10.50329 -10.30681 -9.90799 -9.61947 -9.10217 -8.91078 -8.61684 -8.41652 -8.09161 -6.50514 -3.92612 2.74359 3.14182 3.21930 3.25796 3.37650 3.76019 4.00788 4.06457 4.16577 4.45618 4.46379 4.64324 4.83645 4.88621 4.91915 5.01246 5.15171 5.18090 5.22844 5.25208 5.30467 5.48456 5.57971 5.64302 5.70384 5.77547 5.81048 5.84551 5.91722 5.97240 6.02513 6.09649 6.18089 6.53243 6.69033 6.78007 6.98179 7.07575 7.46505 7.93049 8.18134 8.46096 8.79910 9.05284 9.40375 9.88317 10.66289 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.035353 B = 0.002436 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.811436 B =11491.520067 C =12029.985828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.599 6.599 12 C 0.127 3.873 13 N -0.725 5.725 14 C 0.708 3.292 15 O -0.598 6.598 16 N -0.631 5.631 17 C 0.130 3.870 18 C -0.131 4.131 19 C -0.085 4.085 20 C -0.113 4.113 21 C 0.058 3.942 22 N -0.855 5.855 23 C -0.128 4.128 24 C 0.109 3.891 25 H 0.275 0.725 26 H 0.396 0.604 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.406 0.594 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.030 0.970 39 H 0.340 0.660 40 H 0.340 0.660 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.616 -22.508 -1.753 23.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.215 3.785 11 O -0.486 6.486 12 C -0.001 4.001 13 N -0.385 5.385 14 C 0.409 3.591 15 O -0.477 6.477 16 N -0.369 5.369 17 C 0.007 3.993 18 C -0.169 4.169 19 C -0.104 4.104 20 C -0.151 4.151 21 C -0.072 4.072 22 N -0.384 5.384 23 C -0.167 4.167 24 C -0.014 4.014 25 H 0.085 0.915 26 H 0.230 0.770 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.246 0.754 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.048 0.952 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.069 -22.125 -1.520 23.276 hybrid contribution -0.710 0.660 -0.257 1.003 sum 6.360 -21.464 -1.777 22.457 Atomic orbital electron populations 1.69612 1.05993 1.28611 1.49256 1.25330 0.95680 0.99933 0.96816 0.85864 0.78761 0.80149 0.79133 1.19794 1.20868 1.19790 1.19677 0.93421 0.82011 1.48355 0.87743 1.41780 1.09494 1.04435 1.62639 1.19763 0.88286 0.85012 0.85487 1.90483 1.13772 1.86889 1.57434 1.20790 0.91289 0.84935 1.03104 1.44972 1.11267 1.03362 1.78883 1.15762 0.84827 0.80627 0.77834 1.90880 1.14317 1.83955 1.58529 1.47188 1.05494 1.05896 1.78317 1.21404 1.00594 0.79540 0.97811 1.22118 0.95043 0.99810 0.99966 1.21169 0.95077 0.94826 0.99356 1.21611 1.01311 0.93338 0.98808 1.21885 0.96136 0.93395 0.95819 1.58732 1.65869 1.07777 1.06013 1.21956 1.00695 0.94517 0.99521 1.21655 0.80234 1.00413 0.99134 0.91547 0.77003 0.90008 0.90098 0.75387 0.91991 0.88870 0.90831 0.91472 0.90834 0.92106 0.91036 0.91126 0.95220 0.84762 0.84795 0.91301 0.90501 0.89776 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.96 13.05 55.50 0.72 -23.23 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.31 -8.32 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 9 N -0.55 -13.71 5.29 -10.96 -0.06 -13.77 16 10 C 0.43 9.95 7.85 -10.99 -0.09 9.87 16 11 O -0.60 -15.38 15.24 5.54 0.08 -15.29 16 12 C 0.13 2.43 6.16 -5.19 -0.03 2.40 16 13 N -0.73 -12.76 5.44 -66.41 -0.36 -13.12 16 14 C 0.71 12.09 8.29 -86.91 -0.72 11.37 16 15 O -0.60 -12.01 15.77 5.29 0.08 -11.93 16 16 N -0.63 -8.20 2.97 -178.49 -0.53 -8.74 16 17 C 0.13 1.39 6.43 -3.71 -0.02 1.36 16 18 C -0.13 -1.09 5.16 -26.45 -0.14 -1.23 16 19 C -0.09 -0.63 2.15 -90.42 -0.19 -0.83 16 20 C -0.11 -0.78 4.94 -26.73 -0.13 -0.92 16 21 C 0.06 0.37 6.54 -3.83 -0.03 0.35 16 22 N -0.85 -5.31 9.62 -10.37 -0.10 -5.41 16 23 C -0.13 -1.11 5.36 -26.61 -0.14 -1.25 16 24 C 0.11 1.15 6.39 -3.71 -0.02 1.12 16 25 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.40 9.53 7.90 -40.82 -0.32 9.21 16 27 H 0.08 1.52 8.14 -51.92 -0.42 1.10 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.41 6.96 4.93 -40.82 -0.20 6.76 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.16 6.99 -51.93 -0.36 0.80 16 32 H 0.07 0.50 6.52 -51.93 -0.34 0.16 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.03 0.18 6.53 -51.93 -0.34 -0.16 16 39 H 0.34 1.60 9.08 -39.29 -0.36 1.25 16 40 H 0.34 1.83 8.99 -39.29 -0.35 1.47 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.97 5.65 -51.92 -0.29 0.68 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 354.34 15.07 5.34 5.34 Total: -1.00 -31.95 354.34 -8.33 -40.28 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -6.73 Total: 15.96 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: -1.76 Total: 14.35 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -0.33 Total: -64.26 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: 0.17 Total: -27.22 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.95 -8.33 -40.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328731404.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.732 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds