Wall clock time and date at job start Tue Mar 31 2020 04:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47112 * 2 1 4 4 C 1.52992 * 109.46805 * 120.00100 * 2 1 3 5 5 O 1.42903 * 109.47561 * 64.99936 * 4 2 1 6 6 C 1.42898 * 113.99951 * 180.02562 * 5 4 2 7 7 C 1.53008 * 109.46832 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46920 * 54.99640 * 7 6 5 9 9 O 1.42898 * 109.47027 * 294.99959 * 7 6 5 10 10 C 1.53000 * 109.47236 * 174.99837 * 7 6 5 11 11 N 1.46497 * 109.47224 * 185.00110 * 10 7 6 12 12 C 1.35313 * 125.86667 * 125.29209 * 11 10 7 13 13 C 1.35349 * 106.17218 * 180.18574 * 12 11 10 14 14 C 1.50697 * 126.75364 * 179.85517 * 13 12 11 15 15 N 1.46499 * 109.47276 * 94.71254 * 14 13 12 16 16 C 1.36935 * 119.99938 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00518 * 359.72965 * 16 15 14 18 18 C 1.38817 * 119.99990 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99869 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99909 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46676 * 90.00727 * 20 18 16 22 22 H 1.48502 * 109.46977 * 210.00025 * 20 18 16 23 23 H 1.48494 * 109.47494 * 330.00753 * 20 18 16 24 24 N 1.33776 * 106.49865 * 359.59278 * 13 12 11 25 25 N 1.28634 * 108.88055 * 0.26390 * 24 13 12 26 26 H 1.08994 * 109.47120 * 300.00291 * 1 2 3 27 27 H 1.09004 * 109.46841 * 59.99687 * 1 2 3 28 28 H 1.08994 * 109.47252 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47087 * 239.99967 * 2 1 3 30 30 H 1.09004 * 109.46916 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47195 * 299.99635 * 3 2 1 32 32 H 1.08994 * 109.47366 * 59.99860 * 3 2 1 33 33 H 1.09007 * 109.47391 * 304.99591 * 4 2 1 34 34 H 1.09002 * 109.47062 * 184.99718 * 4 2 1 35 35 H 1.08994 * 109.47267 * 60.00035 * 6 5 4 36 36 H 1.08997 * 109.47080 * 299.99274 * 6 5 4 37 37 H 0.96701 * 113.99673 * 299.99824 * 9 7 6 38 38 H 1.08997 * 109.46709 * 64.99831 * 10 7 6 39 39 H 1.09004 * 109.46796 * 305.00347 * 10 7 6 40 40 H 1.08001 * 126.91913 * 0.04070 * 12 11 10 41 41 H 1.09004 * 109.47205 * 334.71228 * 14 13 12 42 42 H 1.09005 * 109.47240 * 214.71438 * 14 13 12 43 43 H 0.96999 * 119.99984 * 0.02562 * 15 14 13 44 44 H 0.96996 * 119.99743 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6619 -2.0982 1.1920 6 6 2.0913 -2.8660 2.3181 7 6 1.6332 -4.3163 2.1510 8 1 1.9935 -4.7036 1.1979 9 8 0.2055 -4.3711 2.1782 10 6 2.1980 -5.1643 3.2924 11 7 1.8598 -6.5720 3.0684 12 6 2.7375 -7.6010 3.0246 13 6 2.0026 -8.7138 2.7935 14 6 2.5188 -10.1229 2.6556 15 7 2.4352 -10.8026 3.9506 16 6 2.8515 -12.1016 4.0702 17 1 3.2374 -12.6266 3.2089 18 6 2.7728 -12.7455 5.2975 19 7 2.2975 -12.1076 6.3460 20 14 3.3399 -14.5179 5.4604 21 1 4.7809 -14.5454 5.8185 22 1 2.5529 -15.1937 6.5230 23 1 3.1370 -15.2232 4.1695 24 7 0.7271 -8.3177 2.7174 25 7 0.6763 -7.0433 2.8844 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6444 1.2951 35 1 1.6574 -2.4509 3.2277 36 1 3.1786 -2.8337 2.3866 37 1 -0.1850 -4.0412 2.9991 38 1 1.7684 -4.8333 4.2378 39 1 3.2817 -5.0519 3.3266 40 1 3.8092 -7.5452 3.1468 41 1 3.5570 -10.0987 2.3243 42 1 1.9163 -10.6606 1.9234 43 1 2.0850 -10.3324 4.7234 44 1 2.2422 -12.5576 7.2035 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331245128.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:53 Heat of formation + Delta-G solvation = -22.895576 kcal Electronic energy + Delta-G solvation = -23402.973187 eV Core-core repulsion = 19777.923710 eV Total energy + Delta-G solvation = -3625.049477 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.16634 -39.80173 -38.27675 -36.80441 -35.79468 -35.23009 -33.63460 -31.64836 -31.48546 -28.12210 -28.01331 -27.49633 -26.25485 -24.76594 -23.47671 -22.71109 -21.84260 -21.11587 -19.37934 -18.65365 -17.91299 -17.38166 -17.28044 -16.88332 -16.61331 -16.15313 -15.80051 -15.69369 -15.47745 -15.13523 -15.05965 -14.54395 -14.29401 -13.96106 -13.69902 -13.39278 -13.28202 -13.04947 -13.02241 -12.80003 -12.76399 -12.49065 -12.19594 -12.06734 -11.99482 -11.87775 -11.78798 -11.70184 -11.51454 -11.34374 -10.95299 -10.76839 -10.56584 -10.14177 -9.01231 -7.92681 -5.23073 0.68781 1.41603 1.49095 1.53071 1.55681 1.62412 2.54590 2.60378 3.30894 3.39823 3.47924 3.62225 3.77532 3.85060 3.93042 3.97957 4.05954 4.11384 4.22720 4.25733 4.30109 4.31281 4.44423 4.53594 4.62156 4.64383 4.74495 4.79777 4.84802 4.90061 4.99350 5.04942 5.18197 5.21851 5.23004 5.38756 5.42201 5.51525 5.72893 6.25375 6.27066 6.79696 7.33806 7.60502 8.05239 8.31725 9.31311 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.053435 B = 0.002032 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.870676 B =13774.280066 C =13859.376225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 C -0.142 4.142 4 C 0.063 3.937 5 O -0.403 6.403 6 C 0.038 3.962 7 C 0.105 3.895 8 H 0.089 0.911 9 O -0.561 6.561 10 C 0.078 3.922 11 N -0.283 5.283 12 C -0.026 4.026 13 C -0.042 4.042 14 C 0.236 3.764 15 N -0.739 5.739 16 C -0.245 4.245 17 H 0.084 0.916 18 C -0.078 4.078 19 N -0.973 5.973 20 Si 0.981 3.019 21 H -0.282 1.282 22 H -0.298 1.298 23 H -0.269 1.269 24 N -0.310 5.310 25 N -0.089 5.089 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.386 0.614 38 H 0.125 0.875 39 H 0.159 0.841 40 H 0.231 0.769 41 H 0.063 0.937 42 H 0.025 0.975 43 H 0.371 0.629 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.034 31.215 -9.151 32.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.199 4.199 4 C -0.013 4.013 5 O -0.323 6.323 6 C -0.039 4.039 7 C 0.044 3.956 8 H 0.107 0.893 9 O -0.367 6.367 10 C -0.042 4.042 11 N -0.077 5.077 12 C -0.177 4.177 13 C -0.180 4.180 14 C 0.108 3.892 15 N -0.381 5.381 16 C -0.376 4.376 17 H 0.102 0.898 18 C -0.270 4.270 19 N -0.624 5.624 20 Si 0.809 3.191 21 H -0.208 1.208 22 H -0.225 1.225 23 H -0.193 1.193 24 N -0.177 5.177 25 N -0.068 5.068 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.235 0.765 38 H 0.143 0.857 39 H 0.176 0.824 40 H 0.247 0.753 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.202 0.798 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.574 31.117 -10.093 32.908 hybrid contribution 0.957 -0.835 1.359 1.860 sum 4.531 30.282 -8.734 31.840 Atomic orbital electron populations 1.21763 0.95042 1.01335 1.01913 1.21133 0.96438 0.96628 0.97516 1.21757 1.01472 0.93932 1.02764 1.22730 0.99179 0.80846 0.98524 1.87928 1.79329 1.21434 1.43626 1.23124 1.00765 0.90109 0.89909 1.22056 0.82059 0.93371 0.98076 0.89280 1.86753 1.18579 1.87561 1.43815 1.23183 1.06112 0.73467 1.01396 1.47487 1.04832 1.10089 1.45313 1.23887 1.00114 0.86051 1.07642 1.22305 0.90079 0.98119 1.07543 1.18954 0.97883 0.84162 0.88217 1.42511 1.76839 1.11905 1.06881 1.19717 1.33264 0.89498 0.95155 0.89812 1.25658 1.02880 1.02860 0.95615 1.69859 1.53677 1.38328 1.00491 0.85034 0.77424 0.79361 0.77263 1.20837 1.22524 1.19337 1.75063 1.21041 1.03358 1.18284 1.78283 1.05451 1.04256 1.18830 0.92338 0.92352 0.93860 0.91573 0.91779 0.91714 0.91859 0.92366 0.92041 0.90441 0.89472 0.76491 0.85679 0.82365 0.75274 0.91891 0.95725 0.79825 0.94075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.09 71.98 0.65 -1.23 16 2 C -0.10 -1.13 3.16 -10.79 -0.03 -1.16 16 3 C -0.14 -1.04 9.19 71.98 0.66 -0.38 16 4 C 0.06 0.68 5.32 71.98 0.38 1.06 16 5 O -0.40 -6.41 9.84 -144.34 -1.42 -7.83 16 6 C 0.04 0.36 5.57 71.98 0.40 0.76 16 7 C 0.10 1.58 3.44 30.60 0.11 1.69 16 8 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 9 O -0.56 -12.15 12.33 -144.34 -1.78 -13.93 16 10 C 0.08 0.99 6.14 86.38 0.53 1.52 16 11 N -0.28 -7.42 3.44 -347.74 -1.20 -8.62 16 12 C -0.03 -0.73 11.50 83.49 0.96 0.23 16 13 C -0.04 -1.66 6.61 41.59 0.28 -1.38 16 14 C 0.24 10.21 6.82 85.63 0.58 10.79 16 15 N -0.74 -39.81 5.59 -347.17 -1.94 -41.75 16 16 C -0.24 -14.03 9.99 84.04 0.84 -13.19 16 17 H 0.08 4.51 7.83 -2.91 -0.02 4.48 16 18 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 19 N -0.97 -61.48 13.06 21.65 0.28 -61.20 16 20 Si 0.98 46.85 29.55 68.60 2.03 48.88 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 N -0.31 -13.51 12.41 -48.60 -0.60 -14.11 16 25 N -0.09 -3.24 12.09 37.02 0.45 -2.80 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.68 8.14 -2.38 -0.02 0.67 16 28 H 0.04 0.77 7.82 -2.39 -0.02 0.75 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 34 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.09 0.37 8.14 -2.39 -0.02 0.36 16 37 H 0.39 5.53 9.05 -74.06 -0.67 4.86 16 38 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.16 0.64 8.07 -2.39 -0.02 0.62 16 40 H 0.23 4.29 8.06 -2.91 -0.02 4.26 16 41 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 42 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.37 21.78 7.66 -92.71 -0.71 21.07 16 44 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -83.53 372.76 1.26 -82.28 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: -0.39 Total: 24.52 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 5.83 Total: -5.44 kcal Atomic # 7 Polarization: -125.47 SS G_CDS: -3.01 Total: -128.48 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -3.20 Total: -21.76 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -83.53 1.26 -82.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331245128.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.381 kcal (2) G-P(sol) polarization free energy of solvation -83.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds