Wall clock time and date at job start Tue Mar 31 2020 04:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 N 1.46492 * 109.47631 * 174.99916 * 4 2 1 6 6 C 1.36938 * 120.00241 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00320 * 0.02562 * 6 5 4 8 8 C 1.38819 * 119.99938 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99924 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00022 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.47358 * 59.99767 * 10 8 6 12 12 H 1.48496 * 109.47154 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46851 * 300.00017 * 10 8 6 14 14 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 15 15 C 1.34780 * 119.99910 * 85.00011 * 14 2 1 16 16 O 1.21281 * 119.99723 * 0.02562 * 15 14 2 17 17 C 1.50693 * 120.00182 * 180.02562 * 15 14 2 18 18 N 1.46892 * 109.47254 * 180.02562 * 17 15 14 19 19 C 1.47194 * 111.00025 * 188.93685 * 18 17 15 20 20 C 1.52988 * 108.71821 * 167.62024 * 19 18 17 21 21 N 1.46012 * 110.04203 * 50.30508 * 20 19 18 22 22 C 1.46503 * 118.53513 * 161.86739 * 21 20 19 23 23 C 1.33713 * 122.92603 * 341.83405 * 21 20 19 24 24 O 1.21284 * 118.62494 * 181.68512 * 23 21 20 25 25 C 1.46902 * 111.00277 * 66.04289 * 18 17 15 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 30 30 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 31 31 H 0.97006 * 119.99812 * 0.02562 * 5 4 2 32 32 H 0.97002 * 119.99936 * 179.97438 * 9 8 6 33 33 H 0.96994 * 119.99975 * 265.00388 * 14 2 1 34 34 H 1.09007 * 109.46680 * 299.99959 * 17 15 14 35 35 H 1.09000 * 109.47439 * 59.99224 * 17 15 14 36 36 H 1.09005 * 109.59280 * 287.40047 * 19 18 17 37 37 H 1.08996 * 109.59265 * 47.85608 * 19 18 17 38 38 H 1.08999 * 109.37468 * 290.12845 * 20 19 18 39 39 H 1.08998 * 109.28790 * 170.41775 * 20 19 18 40 40 H 1.09003 * 109.46748 * 179.97438 * 22 21 20 41 41 H 1.08996 * 109.46822 * 299.96849 * 22 21 20 42 42 H 1.09000 * 109.47720 * 59.97877 * 22 21 20 43 43 H 1.08993 * 109.38595 * 293.82259 * 25 18 17 44 44 H 1.08997 * 109.38480 * 53.61604 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1837 -1.4387 2.2069 7 1 3.6466 -1.8446 3.0514 8 6 5.5673 -1.5379 2.1515 9 7 6.2218 -1.0437 1.1221 10 14 6.4999 -2.3739 3.5374 11 1 6.0440 -3.7818 3.6622 12 1 7.9547 -2.3486 3.2407 13 1 6.2423 -1.6554 4.8113 14 7 2.0184 -0.6906 -1.1961 15 6 2.1471 -0.0183 -2.3571 16 8 1.8591 1.1586 -2.4115 17 6 2.6490 -0.7288 -3.5877 18 7 2.6991 0.2152 -4.7119 19 6 2.9797 -0.4845 -5.9762 20 6 2.7167 0.4758 -7.1377 21 7 3.4064 1.7418 -6.9062 22 6 3.6255 2.6378 -8.0445 23 6 3.8463 2.1202 -5.7015 24 8 4.3821 3.2028 -5.5922 25 6 3.7044 1.2604 -4.4774 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.7516 -0.1583 2.1370 30 1 1.6054 -1.7198 1.2952 31 1 3.9824 -0.4621 0.4320 32 1 7.1886 -1.1127 1.0836 33 1 2.2490 -1.6317 -1.1525 34 1 3.6482 -1.1213 -3.3984 35 1 1.9762 -1.5507 -3.8325 36 1 4.0219 -0.8033 -5.9940 37 1 2.3277 -1.3534 -6.0655 38 1 1.6453 0.6577 -7.2210 39 1 3.0809 0.0298 -8.0632 40 1 4.1484 3.5327 -7.7070 41 1 4.2265 2.1281 -8.7975 42 1 2.6648 2.9192 -8.4756 43 1 3.3939 1.8786 -3.6351 44 1 4.6637 0.7953 -4.2507 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669594732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:55 Heat of formation + Delta-G solvation = -39.140404 kcal Electronic energy + Delta-G solvation = -24769.392114 eV Core-core repulsion = 21143.638208 eV Total energy + Delta-G solvation = -3625.753906 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.66846 -39.47560 -37.30710 -36.14305 -35.19232 -33.64316 -31.57882 -30.43594 -29.98820 -29.18756 -26.56112 -25.66567 -24.82186 -22.99920 -22.55415 -20.84249 -20.06314 -18.79912 -17.56733 -17.17092 -16.81445 -16.57247 -16.21893 -15.74079 -15.19014 -14.85830 -14.67430 -14.55718 -14.16224 -13.65570 -13.59910 -13.31324 -13.19216 -12.80661 -12.62672 -12.39585 -12.35119 -12.20777 -12.18379 -12.04819 -11.70290 -11.65690 -11.35446 -10.91772 -10.83647 -10.48256 -10.10312 -9.92559 -9.77009 -9.51203 -8.94563 -8.90342 -8.74262 -8.56251 -6.99657 -5.81663 -3.11386 2.56488 2.82728 2.91441 3.16486 3.40408 3.45442 3.46316 3.80565 4.37704 4.46124 4.54266 4.77148 4.88046 4.99889 5.15189 5.16263 5.23272 5.25711 5.29512 5.31014 5.34210 5.50929 5.51357 5.58341 5.65323 5.65636 5.78924 6.02101 6.09257 6.16993 6.19762 6.39196 6.47066 6.50029 6.64491 6.70069 6.95392 7.25502 7.64334 7.86866 8.06819 8.36353 8.55937 9.48162 10.04046 10.39460 11.40581 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.017046 B = 0.003432 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.180229 B = 8156.144551 C = 9067.763261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.135 3.865 3 H 0.086 0.914 4 C 0.144 3.856 5 N -0.731 5.731 6 C -0.244 4.244 7 H 0.070 0.930 8 C -0.012 4.012 9 N -0.932 5.932 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 N -0.711 5.711 15 C 0.515 3.485 16 O -0.531 6.531 17 C 0.032 3.968 18 N -0.513 5.513 19 C 0.032 3.968 20 C 0.123 3.877 21 N -0.612 5.612 22 C 0.073 3.927 23 C 0.528 3.472 24 O -0.549 6.549 25 C 0.033 3.967 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.033 0.967 30 H 0.024 0.976 31 H 0.385 0.615 32 H 0.256 0.744 33 H 0.403 0.597 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.049 0.951 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.137 0.863 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.040 -1.900 -17.818 20.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.030 3.970 3 H 0.104 0.896 4 C 0.016 3.984 5 N -0.376 5.376 6 C -0.375 4.375 7 H 0.088 0.912 8 C -0.208 4.208 9 N -0.580 5.580 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.212 1.212 14 N -0.363 5.363 15 C 0.300 3.700 16 O -0.408 6.408 17 C -0.098 4.098 18 N -0.239 5.239 19 C -0.096 4.096 20 C -0.001 4.001 21 N -0.346 5.346 22 C -0.070 4.070 23 C 0.316 3.684 24 O -0.426 6.426 25 C -0.097 4.097 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.042 0.958 31 H 0.220 0.780 32 H 0.066 0.934 33 H 0.238 0.762 34 H 0.092 0.908 35 H 0.126 0.874 36 H 0.067 0.933 37 H 0.117 0.883 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.155 0.845 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.379 -0.331 -17.664 20.490 hybrid contribution 1.601 -1.380 0.611 2.201 sum -8.778 -1.711 -17.052 19.255 Atomic orbital electron populations 1.22092 0.95515 1.01767 1.02164 1.21221 0.93316 0.97986 0.84472 0.89556 1.20986 0.86816 0.96942 0.93653 1.42344 0.99751 1.70272 1.25274 1.19176 0.89430 1.29574 0.99307 0.91194 1.24749 0.96431 1.01515 0.98088 1.69652 1.07319 1.50722 1.30278 0.86260 0.78973 0.79204 0.81663 1.21278 1.21695 1.21244 1.45952 1.66699 1.14413 1.09202 1.20283 0.77983 0.87485 0.84282 1.90661 1.49670 1.15717 1.84753 1.22072 1.02523 0.95151 0.90104 1.62202 1.47954 1.12271 1.01495 1.22567 1.01044 0.96812 0.89205 1.21469 0.97739 0.83135 0.97708 1.47317 1.58241 1.20474 1.08557 1.21718 1.01540 0.95704 0.87994 1.20181 0.77079 0.86991 0.84128 1.90710 1.44301 1.22410 1.85133 1.22555 0.95029 0.94513 0.97601 0.92654 0.92369 0.91750 0.94917 0.95808 0.78044 0.93431 0.76225 0.90821 0.87403 0.93313 0.88305 0.90770 0.90260 0.89185 0.92365 0.92274 0.84544 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.48 37.16 0.35 -1.74 16 2 C 0.13 2.20 2.73 -67.93 -0.19 2.01 16 3 H 0.09 1.63 7.58 -51.93 -0.39 1.23 16 4 C 0.14 2.73 5.82 -4.05 -0.02 2.71 16 5 N -0.73 -17.73 5.43 -59.91 -0.33 -18.05 16 6 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 7 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 8 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 9 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 10 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 N -0.71 -10.61 4.52 -53.81 -0.24 -10.85 16 15 C 0.51 7.80 7.55 -10.99 -0.08 7.72 16 16 O -0.53 -9.92 13.97 5.56 0.08 -9.84 16 17 C 0.03 0.36 5.44 -4.98 -0.03 0.34 16 18 N -0.51 -6.06 4.47 -237.55 -1.06 -7.13 16 19 C 0.03 0.26 5.60 -3.67 -0.02 0.24 16 20 C 0.12 0.95 6.64 -4.31 -0.03 0.92 16 21 N -0.61 -6.90 3.23 -182.47 -0.59 -7.49 16 22 C 0.07 0.67 10.55 59.85 0.63 1.30 16 23 C 0.53 7.92 7.57 -11.67 -0.09 7.83 16 24 O -0.55 -10.21 16.07 5.55 0.09 -10.12 16 25 C 0.03 0.48 5.14 -5.19 -0.03 0.45 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.39 9.96 7.33 -40.82 -0.30 9.66 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.40 5.56 8.60 -40.82 -0.35 5.21 16 34 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 35 H 0.11 0.89 7.93 -51.93 -0.41 0.47 16 36 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 37 H 0.10 0.55 7.91 -51.93 -0.41 0.14 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.40 8.13 -51.93 -0.42 -0.02 16 40 H 0.09 1.02 6.67 -51.93 -0.35 0.67 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.14 2.40 6.01 -51.93 -0.31 2.09 16 44 H 0.07 1.01 8.05 -51.93 -0.42 0.59 16 LS Contribution 359.26 15.07 5.41 5.41 Total: -1.00 -34.85 359.26 -7.81 -42.66 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -7.13 Total: 10.69 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: 0.25 Total: 14.59 kcal Atomic # 7 Polarization: -68.88 SS G_CDS: -1.49 Total: -70.37 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.17 Total: -19.96 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.85 -7.81 -42.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669594732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.523 kcal (2) G-P(sol) polarization free energy of solvation -34.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds