Wall clock time and date at job start Tue Mar 31 2020 04:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34771 * 120.00228 * 2 1 4 4 O 1.21589 * 120.00169 * 0.02562 * 3 2 1 5 5 N 1.34772 * 119.99939 * 180.02562 * 3 2 1 6 6 C 1.46506 * 120.00022 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.46996 * 179.97438 * 6 5 3 8 8 C 1.50705 * 109.46799 * 179.97438 * 7 6 5 9 9 O 1.21276 * 120.00034 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99931 * 179.97438 * 8 7 6 11 11 C 1.47426 * 125.64777 * 359.97438 * 10 8 7 12 12 C 1.54910 * 104.83209 * 155.89013 * 11 10 8 13 13 H 1.08999 * 111.00452 * 278.93764 * 12 11 10 14 14 N 1.46500 * 111.00500 * 155.08471 * 12 11 10 15 15 C 1.36938 * 120.00171 * 86.45246 * 14 12 11 16 16 H 1.08003 * 119.99938 * 359.97438 * 15 14 12 17 17 C 1.38810 * 119.99997 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99834 * 180.02562 * 17 15 14 19 19 Si 1.86792 * 120.00052 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47096 * 90.00524 * 19 17 15 21 21 H 1.48502 * 109.47334 * 210.00129 * 19 17 15 22 22 H 1.48495 * 109.47372 * 330.00579 * 19 17 15 23 23 C 1.55154 * 101.58031 * 37.01037 * 12 11 10 24 24 C 1.47019 * 125.65013 * 179.97438 * 10 8 7 25 25 H 1.09003 * 109.87977 * 61.62701 * 24 10 8 26 26 C 1.52998 * 109.88546 * 300.61811 * 24 10 8 27 27 H 1.08997 * 109.47212 * 59.99544 * 1 2 3 28 28 H 1.09001 * 109.47358 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46832 * 299.99529 * 1 2 3 30 30 H 0.97001 * 119.99659 * 180.02562 * 2 1 3 31 31 H 0.97001 * 120.00194 * 359.97438 * 5 3 2 32 32 H 1.09002 * 109.47015 * 59.99795 * 6 5 3 33 33 H 1.08990 * 109.46947 * 299.99887 * 6 5 3 34 34 H 1.09002 * 109.47099 * 60.00222 * 7 6 5 35 35 H 1.08995 * 109.47059 * 300.00137 * 7 6 5 36 36 H 1.08998 * 110.36718 * 274.72906 * 11 10 8 37 37 H 1.09005 * 110.36600 * 37.05467 * 11 10 8 38 38 H 0.97003 * 119.99774 * 266.45694 * 14 12 11 39 39 H 0.97002 * 120.00131 * 179.97438 * 18 17 15 40 40 H 1.08999 * 110.71557 * 206.13576 * 23 12 11 41 41 H 1.08995 * 110.87338 * 82.93395 * 23 12 11 42 42 H 1.08998 * 109.47231 * 61.44696 * 26 24 10 43 43 H 1.08997 * 109.47166 * 181.44978 * 26 24 10 44 44 H 1.09008 * 109.46543 * 301.45056 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5311 2.2202 0.0005 5 7 3.4867 1.1671 -0.0005 6 6 4.2193 2.4358 0.0000 7 6 5.7235 2.1561 -0.0001 8 6 6.4771 3.4612 -0.0001 9 8 5.8707 4.5115 0.0004 10 7 7.8248 3.4612 0.0003 11 6 8.6840 2.2631 0.0013 12 6 10.0260 2.7371 -0.6103 13 1 9.9720 2.7624 -1.6986 14 7 11.1352 1.8920 -0.1611 15 6 11.4371 0.7410 -0.8388 16 1 10.8571 0.4559 -1.7042 17 6 12.4878 -0.0599 -0.4129 18 7 12.7782 -1.1660 -1.0646 19 14 13.4904 0.4327 1.0842 20 1 12.8777 -0.1513 2.3043 21 1 14.8793 -0.0719 0.9378 22 1 13.5112 1.9129 1.2008 23 6 10.1460 4.1693 -0.0260 24 6 8.6817 4.6558 -0.0003 25 1 8.5017 5.2415 0.9012 26 6 8.3900 5.5050 -1.2391 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9500 -0.8401 -0.0004 31 1 3.9716 0.3270 -0.0005 32 1 3.9563 3.0068 0.8905 33 1 3.9556 3.0079 -0.8894 34 1 5.9868 1.5849 -0.8904 35 1 5.9868 1.5841 0.8896 36 1 8.8363 1.9065 1.0200 37 1 8.2425 1.4792 -0.6141 38 1 11.6558 2.1478 0.6164 39 1 13.5127 -1.7255 -0.7672 40 1 10.7509 4.8015 -0.6760 41 1 10.5621 4.1443 0.9811 42 1 7.3510 5.8339 -1.2177 43 1 9.0465 6.3750 -1.2460 44 1 8.5646 4.9108 -2.1361 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676722479.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:00 Heat of formation + Delta-G solvation = -49.696793 kcal Electronic energy + Delta-G solvation = -24168.861334 eV Core-core repulsion = 20542.649669 eV Total energy + Delta-G solvation = -3626.211665 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.31410 -39.90363 -37.71468 -35.47370 -34.66954 -34.38867 -32.23766 -31.58761 -30.47256 -28.88556 -26.88760 -25.61666 -24.26017 -23.39878 -21.49336 -21.16624 -20.30264 -19.18374 -18.43932 -17.81271 -17.11801 -16.35341 -16.18575 -15.70038 -15.41151 -15.04432 -14.53365 -14.31265 -14.23993 -13.80632 -13.72302 -13.40491 -13.13686 -12.99434 -12.81301 -12.58926 -12.51520 -12.12866 -11.98897 -11.89414 -11.60253 -11.54953 -11.13356 -10.90367 -10.71795 -10.45534 -10.43601 -10.12155 -9.76284 -9.71708 -9.53336 -9.12532 -9.05044 -8.48426 -7.48053 -5.92482 -3.31006 2.43002 2.70335 3.03789 3.13053 3.26898 3.29579 3.36236 4.04010 4.44963 4.54226 4.62863 4.90391 4.91124 4.96565 5.00600 5.10571 5.25369 5.25777 5.32892 5.42703 5.49944 5.50293 5.69789 5.72256 5.76982 5.82446 5.85905 5.96842 6.05211 6.13553 6.16781 6.26217 6.28094 6.38289 6.52038 6.65239 6.66907 7.66826 7.77585 7.81236 8.24306 8.26417 8.40676 9.02524 9.74789 9.92690 11.25017 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.015582 B = 0.003118 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.463462 B = 8978.558418 C =10417.182969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.753 5.753 3 C 0.702 3.298 4 O -0.588 6.588 5 N -0.747 5.747 6 C 0.155 3.845 7 C -0.151 4.151 8 C 0.533 3.467 9 O -0.546 6.546 10 N -0.610 5.610 11 C 0.073 3.927 12 C 0.179 3.821 13 H 0.073 0.927 14 N -0.737 5.737 15 C -0.255 4.255 16 H 0.092 0.908 17 C 0.010 3.990 18 N -0.928 5.928 19 Si 0.884 3.116 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.276 1.276 23 C -0.140 4.140 24 C 0.139 3.861 25 H 0.071 0.929 26 C -0.162 4.162 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.398 0.602 31 H 0.397 0.603 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.365 0.635 39 H 0.261 0.739 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.338 3.425 2.832 16.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.409 5.409 3 C 0.401 3.599 4 O -0.466 6.466 5 N -0.403 5.403 6 C 0.031 3.969 7 C -0.191 4.191 8 C 0.321 3.679 9 O -0.424 6.424 10 N -0.344 5.344 11 C -0.053 4.053 12 C 0.067 3.933 13 H 0.091 0.909 14 N -0.379 5.379 15 C -0.384 4.384 16 H 0.110 0.890 17 C -0.186 4.186 18 N -0.575 5.575 19 Si 0.714 3.286 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.202 1.202 23 C -0.179 4.179 24 C 0.036 3.964 25 H 0.089 0.911 26 C -0.220 4.220 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.231 0.769 31 H 0.231 0.769 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.198 0.802 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.277 4.768 2.658 18.119 hybrid contribution 1.376 -0.840 1.108 1.957 sum -15.901 3.928 3.767 16.807 Atomic orbital electron populations 1.21383 0.78177 1.01898 1.02289 1.44924 1.07790 1.07171 1.81020 1.15927 0.81718 0.84283 0.77931 1.90951 1.67852 1.30316 1.57471 1.45112 1.04767 1.09962 1.80429 1.20873 0.88099 0.84048 1.03888 1.21783 0.94858 0.97048 1.05397 1.19883 0.80913 0.90704 0.76364 1.90699 1.67443 1.33516 1.50782 1.48616 1.04555 1.09014 1.72196 1.23436 0.92999 0.86971 1.01875 1.21238 0.86445 0.88087 0.97524 0.90923 1.42674 1.34809 1.25889 1.34501 1.19048 1.13078 0.96623 1.09653 0.89006 1.24687 0.98537 0.96724 0.98701 1.69697 1.31902 1.14479 1.41421 0.86570 0.80339 0.77984 0.83728 1.20960 1.21600 1.20201 1.23021 0.94233 0.98371 1.02283 1.21474 0.89596 0.86683 0.98650 0.91143 1.22141 1.02884 0.99487 0.97493 0.92389 0.90694 0.92419 0.76916 0.76941 0.90736 0.90661 0.88051 0.88206 0.91173 0.90770 0.80191 0.92842 0.89871 0.90764 0.91278 0.91947 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.73 10.70 59.85 0.64 1.37 16 2 N -0.75 -6.01 5.72 -72.07 -0.41 -6.42 16 3 C 0.70 8.40 8.57 -86.93 -0.74 7.66 16 4 O -0.59 -9.83 16.34 5.29 0.09 -9.75 16 5 N -0.75 -7.27 5.56 -65.23 -0.36 -7.63 16 6 C 0.16 1.82 4.96 -4.04 -0.02 1.80 16 7 C -0.15 -1.58 4.82 -27.88 -0.13 -1.72 16 8 C 0.53 7.52 7.63 -10.98 -0.08 7.44 16 9 O -0.55 -9.31 14.87 5.56 0.08 -9.23 16 10 N -0.61 -8.51 3.08 -163.02 -0.50 -9.02 16 11 C 0.07 1.07 6.39 -2.53 -0.02 1.06 16 12 C 0.18 2.99 3.68 -65.78 -0.24 2.74 16 13 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 14 N -0.74 -15.47 5.08 -51.35 -0.26 -15.73 16 15 C -0.25 -6.52 10.47 -15.06 -0.16 -6.68 16 16 H 0.09 2.52 8.06 -52.48 -0.42 2.10 16 17 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 18 N -0.93 -27.45 13.97 55.49 0.78 -26.67 16 19 Si 0.88 20.58 27.73 -169.99 -4.71 15.86 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.00 6.52 56.52 0.37 -5.64 16 23 C -0.14 -1.94 6.12 -24.90 -0.15 -2.09 16 24 C 0.14 1.88 3.49 -66.96 -0.23 1.64 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 26 C -0.16 -2.07 9.07 37.16 0.34 -1.73 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.40 1.90 8.84 -40.82 -0.36 1.54 16 31 H 0.40 2.59 8.49 -40.82 -0.35 2.24 16 32 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 33 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 34 H 0.10 0.94 7.85 -51.93 -0.41 0.53 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.06 7.48 -51.93 -0.39 0.67 16 38 H 0.36 7.57 5.58 -40.82 -0.23 7.34 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.08 1.07 7.83 -51.93 -0.41 0.66 16 41 H 0.07 1.00 8.00 -51.93 -0.42 0.59 16 42 H 0.07 0.99 6.74 -51.93 -0.35 0.64 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 LS Contribution 361.12 15.07 5.44 5.44 Total: -1.00 -34.35 361.12 -7.91 -42.25 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -7.14 Total: 9.21 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: -0.90 Total: 11.68 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -0.76 Total: -65.48 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.17 Total: -18.97 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.71 Total: 15.86 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.35 -7.91 -42.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676722479.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.443 kcal (2) G-P(sol) polarization free energy of solvation -34.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds