Wall clock time and date at job start Tue Mar 31 2020 04:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 120.00327 * 2 1 4 4 C 1.53009 * 109.46786 * 95.46136 * 3 2 1 5 5 H 1.08992 * 110.36577 * 51.85208 * 4 3 2 6 6 C 1.54385 * 110.40911 * 289.37264 * 4 3 2 7 7 C 1.54259 * 105.05845 * 217.36765 * 6 4 3 8 8 C 1.54381 * 105.06138 * 0.02562 * 7 6 4 9 9 N 1.48557 * 104.59394 * 23.85491 * 8 7 6 10 10 C 1.46901 * 111.00086 * 200.95855 * 9 8 7 11 11 C 1.34782 * 120.00018 * 180.02562 * 2 1 3 12 12 O 1.21579 * 120.00017 * 179.97438 * 11 2 1 13 13 N 1.34772 * 119.99769 * 0.02562 * 11 2 1 14 14 C 1.46496 * 120.00130 * 180.02562 * 13 11 2 15 15 C 1.50703 * 109.47633 * 179.97438 * 14 13 11 16 16 O 1.21289 * 119.99607 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00244 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00195 * 180.02562 * 17 15 14 19 19 H 1.08009 * 119.99647 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00349 * 179.97438 * 18 17 15 21 21 N 1.31405 * 119.99748 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 119.99963 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47518 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47128 * 119.99899 * 22 20 18 25 25 H 1.48499 * 109.47067 * 239.99650 * 22 20 18 26 26 H 1.08999 * 109.47264 * 89.99448 * 1 2 3 27 27 H 1.09002 * 109.46895 * 209.99879 * 1 2 3 28 28 H 1.08998 * 109.46506 * 329.99645 * 1 2 3 29 29 H 1.09002 * 109.47226 * 335.46723 * 3 2 1 30 30 H 1.08998 * 109.47614 * 215.46033 * 3 2 1 31 31 H 1.08994 * 110.32843 * 336.26861 * 6 4 3 32 32 H 1.09000 * 110.31746 * 98.47679 * 6 4 3 33 33 H 1.09004 * 110.32170 * 118.90120 * 7 6 4 34 34 H 1.09000 * 110.32330 * 241.10952 * 7 6 4 35 35 H 1.09000 * 110.41131 * 265.07060 * 8 7 6 36 36 H 1.09004 * 110.40757 * 142.62804 * 8 7 6 37 37 H 1.08998 * 109.47428 * 170.59733 * 10 9 8 38 38 H 1.09001 * 109.47003 * 50.59632 * 10 9 8 39 39 H 1.08994 * 109.47222 * 290.60161 * 10 9 8 40 40 H 0.97006 * 120.00391 * 359.97438 * 13 11 2 41 41 H 1.09003 * 109.47440 * 299.99967 * 14 13 11 42 42 H 1.09005 * 109.47687 * 59.99563 * 14 13 11 43 43 H 0.97002 * 119.99947 * 359.97438 * 17 15 14 44 44 H 0.97006 * 120.00459 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5715 1.6416 1.4361 5 1 3.0767 0.8088 1.9250 6 6 1.3132 2.0528 2.2305 7 6 1.7744 3.2093 3.1412 8 6 3.2723 3.4001 2.8199 9 7 3.4339 2.8515 1.4488 10 6 4.8357 2.5013 1.1837 11 6 2.1389 -1.1672 -0.0005 12 8 3.3547 -1.1672 -0.0010 13 7 1.4650 -2.3344 -0.0016 14 6 2.1974 -3.6031 -0.0016 15 6 1.2182 -4.7486 -0.0022 16 8 0.0257 -4.5269 -0.0021 17 7 1.6674 -6.0193 -0.0018 18 6 0.7765 -7.0613 -0.0029 19 1 -0.2854 -6.8639 -0.0037 20 6 1.2396 -8.3714 -0.0030 21 7 2.5315 -8.6115 -0.0026 22 14 0.0257 -9.7911 -0.0038 23 1 -1.3601 -9.2576 -0.0036 24 1 0.2366 -10.6220 -1.2164 25 1 0.2357 -10.6225 1.2085 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3632 0.8900 0.5139 29 1 1.5697 2.0508 -0.4267 30 1 3.1042 1.1649 -0.5962 31 1 0.5316 2.3940 1.5518 32 1 0.9554 1.2171 2.8318 33 1 1.2191 4.1182 2.9094 34 1 1.6429 2.9413 4.1895 35 1 3.8868 2.8429 3.5272 36 1 3.5335 4.4582 2.8392 37 1 4.9016 1.9516 0.2448 38 1 5.2149 1.8805 1.9955 39 1 5.4308 3.4118 1.1142 40 1 0.4950 -2.3344 -0.0016 41 1 2.8248 -3.6606 -0.8911 42 1 2.8235 -3.6614 0.8888 43 1 2.6211 -6.1965 -0.0015 44 1 2.8550 -9.5260 -0.0023 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680958299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:29 Heat of formation + Delta-G solvation = -77.088296 kcal Electronic energy + Delta-G solvation = -24446.086896 eV Core-core repulsion = 20818.687446 eV Total energy + Delta-G solvation = -3627.399450 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.51766 -40.28593 -39.69542 -36.59043 -36.26495 -35.34849 -33.38405 -33.09075 -31.47634 -29.16399 -27.97657 -26.75512 -26.42318 -25.18404 -21.90837 -21.72467 -21.34360 -20.89063 -20.08149 -19.08501 -17.68124 -17.41677 -17.23725 -16.81189 -16.52990 -16.41017 -16.01912 -15.61777 -15.50310 -15.14461 -14.75788 -14.61616 -14.42762 -14.12419 -13.98325 -13.55451 -13.52536 -13.38806 -13.13178 -13.01587 -12.91871 -12.50399 -12.44928 -12.29234 -12.12485 -12.11068 -11.71871 -11.58499 -11.42506 -11.34403 -10.56697 -10.31383 -10.10257 -9.67469 -9.47811 -8.51598 -6.01847 1.34828 1.42120 1.50793 1.58556 1.88254 2.06771 2.27507 2.78335 3.10562 3.15674 3.20997 3.60896 3.76186 3.98744 4.15905 4.21019 4.25243 4.29690 4.38514 4.42875 4.43266 4.47565 4.54483 4.58625 4.72385 4.74560 4.86346 4.91179 4.94601 5.01465 5.06381 5.19327 5.27140 5.30166 5.38497 5.45119 5.79800 5.90319 5.91660 5.99262 6.47020 6.88610 7.02816 7.40599 7.49204 7.93165 8.65667 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.031651 B = 0.002627 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.423430 B =10656.092219 C =10947.662893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.624 5.624 3 C 0.154 3.846 4 C 0.048 3.952 5 H 0.023 0.977 6 C -0.116 4.116 7 C -0.121 4.121 8 C 0.029 3.971 9 N -0.511 5.511 10 C 0.015 3.985 11 C 0.701 3.299 12 O -0.630 6.630 13 N -0.724 5.724 14 C 0.141 3.859 15 C 0.435 3.565 16 O -0.623 6.623 17 N -0.559 5.559 18 C -0.335 4.335 19 H 0.087 0.913 20 C -0.012 4.012 21 N -0.917 5.917 22 Si 0.998 3.002 23 H -0.269 1.269 24 H -0.271 1.271 25 H -0.271 1.271 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.036 0.964 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.018 0.982 39 H 0.086 0.914 40 H 0.410 0.590 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.398 0.602 44 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.005 23.094 3.657 23.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.361 5.361 3 C 0.031 3.969 4 C -0.062 4.062 5 H 0.041 0.959 6 C -0.154 4.154 7 C -0.159 4.159 8 C -0.099 4.099 9 N -0.236 5.236 10 C -0.133 4.133 11 C 0.402 3.598 12 O -0.512 6.512 13 N -0.384 5.384 14 C 0.012 3.988 15 C 0.222 3.778 16 O -0.511 6.511 17 N -0.195 5.195 18 C -0.465 4.465 19 H 0.105 0.895 20 C -0.212 4.212 21 N -0.557 5.557 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.196 1.196 25 H -0.197 1.197 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.105 0.895 40 H 0.250 0.750 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.233 0.767 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.967 23.430 3.234 23.672 hybrid contribution 0.298 -1.863 0.629 1.988 sum -0.670 21.567 3.862 21.920 Atomic orbital electron populations 1.22047 0.77487 1.04347 1.03196 1.46972 1.07707 1.03853 1.77539 1.21186 0.97106 0.83261 0.95376 1.23020 0.94922 0.91544 0.96751 0.95876 1.22386 0.96476 0.98216 0.98306 1.22313 0.94759 0.99181 0.99608 1.23222 0.97215 1.01175 0.88272 1.65272 1.07395 1.24029 1.26861 1.22511 0.89266 1.01089 1.00479 1.15966 0.84876 0.81046 0.77881 1.90861 1.13112 1.87002 1.60179 1.44865 1.11031 1.03360 1.79129 1.20574 0.92951 0.81442 1.03832 1.20360 0.89396 0.84525 0.83540 1.90459 1.17975 1.84640 1.57995 1.41843 1.09893 1.04305 1.63433 1.19780 0.91064 0.85367 1.50254 0.89483 1.26146 0.98474 1.00802 0.95800 1.69689 1.13826 1.22818 1.49382 0.84799 0.77804 0.77011 0.78292 1.19327 1.19644 1.19661 0.91239 0.91801 0.87773 0.86962 0.92203 0.89174 0.92017 0.89409 0.90792 0.94610 0.88551 0.92120 0.96341 0.89507 0.75008 0.89195 0.89370 0.76741 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 9.97 127.77 1.27 2.52 16 2 N -0.62 -15.33 2.80 -864.90 -2.42 -17.75 16 3 C 0.15 3.36 4.97 86.38 0.43 3.79 16 4 C 0.05 1.02 2.48 45.06 0.11 1.13 16 5 H 0.02 0.67 7.99 -2.39 -0.02 0.65 16 6 C -0.12 -1.85 5.78 31.49 0.18 -1.66 16 7 C -0.12 -1.60 7.00 31.49 0.22 -1.38 16 8 C 0.03 0.45 6.49 86.45 0.56 1.01 16 9 N -0.51 -9.90 5.34 -882.61 -4.71 -14.61 16 10 C 0.02 0.31 9.52 127.69 1.22 1.52 16 11 C 0.70 23.47 8.24 179.05 1.48 24.94 16 12 O -0.63 -25.25 16.01 -3.97 -0.06 -25.31 16 13 N -0.72 -25.02 5.39 -482.30 -2.60 -27.62 16 14 C 0.14 5.36 6.15 85.63 0.53 5.88 16 15 C 0.43 20.29 7.85 87.66 0.69 20.98 16 16 O -0.62 -32.15 15.24 -3.06 -0.05 -32.19 16 17 N -0.56 -28.31 5.29 -306.98 -1.62 -29.93 16 18 C -0.34 -18.50 9.68 84.04 0.81 -17.68 16 19 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 20 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 21 N -0.92 -48.94 13.05 21.66 0.28 -48.66 16 22 Si 1.00 41.73 29.55 68.60 2.03 43.76 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 1.25 6.36 -2.39 -0.02 1.24 16 28 H 0.10 1.19 6.39 -2.39 -0.02 1.18 16 29 H 0.11 1.81 7.84 -2.39 -0.02 1.79 16 30 H 0.06 1.58 6.66 -2.39 -0.02 1.56 16 31 H 0.09 1.12 6.59 -2.39 -0.02 1.11 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.04 0.61 7.83 -2.39 -0.02 0.59 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.06 1.36 7.18 -2.39 -0.02 1.34 16 38 H 0.02 0.40 7.89 -2.39 -0.02 0.38 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.41 13.71 5.17 -92.70 -0.48 13.23 16 41 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 42 H 0.09 3.25 8.14 -2.38 -0.02 3.23 16 43 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 44 H 0.28 13.92 8.31 -92.70 -0.77 13.15 16 Total: -1.00 -68.03 356.04 -1.39 -69.41 By element: Atomic # 1 Polarization: 42.20 SS G_CDS: -0.19 Total: 42.01 kcal Atomic # 6 Polarization: 32.94 SS G_CDS: 7.97 Total: 40.90 kcal Atomic # 7 Polarization: -127.50 SS G_CDS: -11.08 Total: -138.58 kcal Atomic # 8 Polarization: -57.40 SS G_CDS: -0.11 Total: -57.51 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -68.03 -1.39 -69.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680958299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.674 kcal (2) G-P(sol) polarization free energy of solvation -68.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds