Wall clock time and date at job start Tue Mar 31 2020 04:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 120.00022 * 2 1 4 4 C 1.52997 * 109.47046 * 90.00178 * 3 2 1 5 5 C 1.52996 * 109.47627 * 60.00035 * 4 3 2 6 6 C 1.52998 * 109.47118 * 299.99613 * 4 3 2 7 7 C 1.53004 * 109.46997 * 179.97438 * 4 3 2 8 8 N 1.46494 * 109.47534 * 179.97438 * 7 4 3 9 9 C 1.36931 * 120.00458 * 179.97438 * 8 7 4 10 10 H 1.08002 * 120.00103 * 0.02562 * 9 8 7 11 11 C 1.38812 * 120.00429 * 179.97438 * 9 8 7 12 12 N 1.31624 * 119.99535 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00484 * 179.97438 * 11 9 8 14 14 H 1.48490 * 109.47339 * 180.02562 * 13 11 9 15 15 H 1.48493 * 109.47239 * 300.00542 * 13 11 9 16 16 H 1.48504 * 109.46636 * 60.00101 * 13 11 9 17 17 C 1.34779 * 119.99836 * 179.97438 * 2 1 3 18 18 O 1.21278 * 119.99887 * 179.97438 * 17 2 1 19 19 C 1.50703 * 119.99940 * 0.02562 * 17 2 1 20 20 H 1.08994 * 110.49162 * 319.29537 * 19 17 2 21 21 C 1.54105 * 110.55002 * 81.99868 * 19 17 2 22 22 N 1.47052 * 103.86364 * 118.59252 * 21 19 17 23 23 C 1.33942 * 109.17826 * 359.97438 * 22 21 19 24 24 O 1.21593 * 123.03917 * 179.97438 * 23 22 21 25 25 N 1.34257 * 113.96388 * 0.08719 * 23 22 21 26 26 H 1.08996 * 109.47183 * 90.00518 * 1 2 3 27 27 H 1.09006 * 109.47028 * 210.00292 * 1 2 3 28 28 H 1.08997 * 109.46792 * 329.99899 * 1 2 3 29 29 H 1.08998 * 109.46827 * 329.99613 * 3 2 1 30 30 H 1.09000 * 109.46858 * 210.00465 * 3 2 1 31 31 H 1.08996 * 109.47637 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.46562 * 300.00030 * 5 4 3 33 33 H 1.09000 * 109.46797 * 59.99395 * 5 4 3 34 34 H 1.09006 * 109.47458 * 300.00231 * 6 4 3 35 35 H 1.09004 * 109.47239 * 60.00361 * 6 4 3 36 36 H 1.08996 * 109.47462 * 180.02562 * 6 4 3 37 37 H 1.08998 * 109.46846 * 59.99452 * 7 4 3 38 38 H 1.09000 * 109.46887 * 300.00275 * 7 4 3 39 39 H 0.97000 * 119.99459 * 359.97438 * 8 7 4 40 40 H 0.97005 * 119.99717 * 179.97438 * 12 11 9 41 41 H 1.09004 * 110.54737 * 237.18935 * 21 19 17 42 42 H 1.08999 * 110.54560 * 359.85255 * 21 19 17 43 43 H 0.97002 * 125.40624 * 179.97438 * 22 21 19 44 44 H 0.97003 * 125.58087 * 179.91385 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 3.2795 0.6441 2.1638 6 6 1.1157 1.8934 2.1637 7 6 3.2182 3.0351 1.4425 8 7 3.4619 3.4583 2.8236 9 6 4.1358 4.6238 3.0738 10 1 4.4874 5.2312 2.2529 11 6 4.3663 5.0251 4.3825 12 7 3.9374 4.2851 5.3829 13 14 5.2863 6.6146 4.7238 14 1 5.4009 6.8150 6.1907 15 1 6.6442 6.5384 4.1276 16 1 4.5457 7.7536 4.1244 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1672 0.0001 19 6 1.3854 -2.4723 0.0005 20 1 0.5240 -2.4156 0.6660 21 6 0.9415 -2.8407 -1.4285 22 7 1.6240 -4.1164 -1.6917 23 6 2.3489 -4.4572 -0.6182 24 8 3.0163 -5.4721 -0.5640 25 7 2.2706 -3.5786 0.3940 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6085 2.0283 -0.5139 30 1 3.1499 1.1384 -0.5139 31 1 3.4615 0.9590 3.1913 32 1 2.7344 -0.2998 2.1637 33 1 4.2318 0.5138 1.6499 34 1 0.5266 2.6531 1.6499 35 1 0.5707 0.9494 2.1638 36 1 1.2973 2.2084 3.1912 37 1 2.6295 3.7949 0.9284 38 1 4.1706 2.9043 0.9287 39 1 3.1458 2.9130 3.5608 40 1 4.0988 4.5653 6.2975 41 1 -0.1401 -2.9693 -1.4720 42 1 1.2639 -2.0783 -2.1377 43 1 1.5594 -4.6294 -2.5123 44 1 2.7245 -3.6590 1.2475 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755284029.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:41 Heat of formation + Delta-G solvation = -29.598157 kcal Electronic energy + Delta-G solvation = -25306.330293 eV Core-core repulsion = 21680.990170 eV Total energy + Delta-G solvation = -3625.340123 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.65410 -39.90393 -37.49075 -36.36898 -35.26408 -33.33853 -33.11138 -30.43162 -29.55720 -27.99523 -26.80545 -26.00492 -25.41672 -23.84596 -22.41285 -22.05506 -19.84733 -18.47324 -18.15879 -17.76597 -17.23798 -16.62928 -16.27513 -15.86413 -15.56344 -14.80015 -14.48560 -14.33040 -14.22371 -13.94605 -13.66041 -13.54324 -13.28742 -13.20489 -12.81653 -12.67317 -12.61531 -12.27426 -12.09885 -11.30637 -11.18597 -11.00449 -10.80138 -10.76734 -10.58741 -10.42656 -10.28139 -10.21658 -9.92501 -9.69827 -9.66865 -9.12508 -8.84925 -8.70073 -6.88606 -5.74834 -3.02453 2.21024 2.48399 2.67320 2.99528 3.45101 3.49608 3.50519 3.63461 3.86563 4.07247 4.35144 4.61225 4.76774 4.82974 4.93638 5.02091 5.11131 5.21033 5.25068 5.34306 5.43530 5.56048 5.66767 5.85775 5.89988 6.04981 6.08998 6.24838 6.34505 6.47275 6.54803 6.67024 6.70939 6.74713 6.83676 6.91186 6.94591 7.04531 7.17407 7.71270 7.95466 8.34112 8.44756 9.55813 10.14586 10.49202 11.48208 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.031608 B = 0.003061 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.645484 B = 9144.127338 C = 9534.397155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.604 5.604 3 C 0.127 3.873 4 C -0.086 4.086 5 C -0.123 4.123 6 C -0.136 4.136 7 C 0.165 3.835 8 N -0.727 5.727 9 C -0.238 4.238 10 H 0.069 0.931 11 C -0.014 4.014 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.291 1.291 15 H -0.286 1.286 16 H -0.287 1.287 17 C 0.499 3.501 18 O -0.510 6.510 19 C 0.101 3.899 20 H 0.116 0.884 21 C 0.107 3.893 22 N -0.739 5.739 23 C 0.706 3.294 24 O -0.584 6.584 25 N -0.714 5.714 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.035 0.965 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.067 0.933 37 H 0.017 0.983 38 H 0.019 0.981 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.432 0.568 44 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.193 -13.053 -14.725 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.337 5.337 3 C 0.004 3.996 4 C -0.087 4.087 5 C -0.180 4.180 6 C -0.193 4.193 7 C 0.037 3.963 8 N -0.373 5.373 9 C -0.369 4.369 10 H 0.087 0.913 11 C -0.210 4.210 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.213 1.213 16 H -0.213 1.213 17 C 0.283 3.717 18 O -0.383 6.383 19 C -0.010 4.010 20 H 0.133 0.867 21 C -0.019 4.019 22 N -0.403 5.403 23 C 0.405 3.595 24 O -0.461 6.461 25 N -0.377 5.377 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.035 0.965 38 H 0.037 0.963 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.274 0.726 44 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -13.102 -13.414 -14.705 23.829 hybrid contribution 0.382 0.809 0.586 1.069 sum -12.721 -12.605 -14.120 22.805 Atomic orbital electron populations 1.22089 0.79627 1.04100 1.01981 1.47790 1.06891 1.06070 1.72978 1.21609 0.97412 0.83238 0.97308 1.21112 0.96477 0.97051 0.94103 1.21713 0.99229 0.96055 1.01007 1.21890 0.95707 0.99796 1.01930 1.20576 0.95679 0.91116 0.88917 1.42368 1.68114 1.25848 1.00936 1.19191 1.27777 0.98221 0.91720 0.91329 1.24718 1.01744 0.98980 0.95577 1.69648 1.51597 1.38971 0.98157 0.86266 0.79745 0.83354 0.76818 1.21739 1.21316 1.21346 1.20596 0.88444 0.85037 0.77580 1.90794 1.13307 1.86656 1.47590 1.21927 0.94002 0.87274 0.97764 0.86682 1.22206 0.98595 0.87134 0.93943 1.45028 1.51942 1.25207 1.18123 1.15928 0.79764 0.83041 0.80764 1.91009 1.46024 1.27047 1.82026 1.44927 1.52557 1.21833 1.18360 0.92286 0.91149 0.89642 0.90326 0.89733 0.92076 0.94596 0.92527 0.93162 0.93621 0.91423 0.96492 0.96327 0.78018 0.93522 0.88754 0.89569 0.72596 0.72139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.33 9.06 59.85 0.54 0.88 16 2 N -0.60 -5.58 2.40 -181.57 -0.44 -6.01 16 3 C 0.13 1.52 4.60 -4.04 -0.02 1.50 16 4 C -0.09 -1.32 0.60 -154.51 -0.09 -1.42 16 5 C -0.12 -2.11 6.97 37.16 0.26 -1.85 16 6 C -0.14 -1.93 7.05 37.16 0.26 -1.67 16 7 C 0.17 3.26 5.15 -4.04 -0.02 3.24 16 8 N -0.73 -18.16 5.00 -59.91 -0.30 -18.46 16 9 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 10 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 11 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 12 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 13 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 C 0.50 5.38 5.19 -10.98 -0.06 5.32 16 18 O -0.51 -7.91 14.35 5.56 0.08 -7.83 16 19 C 0.10 0.75 3.32 -68.20 -0.23 0.53 16 20 H 0.12 0.53 6.40 -51.93 -0.33 0.20 16 21 C 0.11 0.56 7.57 -3.16 -0.02 0.54 16 22 N -0.74 -5.84 6.37 -64.62 -0.41 -6.25 16 23 C 0.71 8.60 8.92 -88.13 -0.79 7.81 16 24 O -0.58 -9.71 18.05 5.28 0.10 -9.62 16 25 N -0.71 -7.39 5.64 -59.25 -0.33 -7.72 16 26 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.07 0.22 5.98 -51.93 -0.31 -0.09 16 28 H 0.08 0.49 6.05 -51.93 -0.31 0.17 16 29 H 0.08 0.79 8.07 -51.93 -0.42 0.38 16 30 H 0.08 1.17 7.42 -51.93 -0.39 0.78 16 31 H 0.06 1.21 6.86 -51.93 -0.36 0.85 16 32 H 0.03 0.55 6.15 -51.93 -0.32 0.23 16 33 H 0.06 1.07 7.73 -51.93 -0.40 0.67 16 34 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 35 H 0.04 0.52 5.99 -51.93 -0.31 0.21 16 36 H 0.07 1.19 6.86 -51.93 -0.36 0.84 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.38 10.05 5.36 -40.82 -0.22 9.83 16 40 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 42 H 0.09 0.44 7.72 -51.93 -0.40 0.04 16 43 H 0.43 2.55 8.96 -40.82 -0.37 2.18 16 44 H 0.44 4.49 8.96 -40.82 -0.37 4.12 16 LS Contribution 344.98 15.07 5.20 5.20 Total: -1.00 -37.27 344.98 -7.33 -44.60 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -6.51 Total: 8.54 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -0.41 Total: 7.57 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: -0.76 Total: -65.96 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: 0.18 Total: -17.45 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -37.27 -7.33 -44.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755284029.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.006 kcal (2) G-P(sol) polarization free energy of solvation -37.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds