Wall clock time and date at job start Tue Mar 31 2020 05:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86801 * 119.99746 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99970 * 3 2 1 5 5 H 1.48504 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47038 * 119.99946 * 3 2 1 7 7 C 1.40172 * 120.00350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00325 * 180.02562 * 7 2 1 9 9 C 1.39875 * 119.99866 * 359.71983 * 7 2 1 10 10 N 1.31592 * 125.29312 * 179.97438 * 9 7 2 11 11 C 1.31240 * 115.81551 * 179.78356 * 10 9 7 12 12 C 1.48214 * 122.46899 * 180.21781 * 11 10 9 13 13 C 1.39468 * 120.12785 * 180.02562 * 12 11 10 14 14 C 1.37978 * 119.86268 * 179.78985 * 13 12 11 15 15 C 1.38361 * 120.13204 * 0.48743 * 14 13 12 16 16 C 1.50707 * 119.86808 * 179.76884 * 15 14 13 17 17 F 1.39903 * 109.46727 * 269.98027 * 16 15 14 18 18 F 1.39903 * 109.46968 * 29.97495 * 16 15 14 19 19 F 1.39890 * 109.46999 * 149.98063 * 16 15 14 20 20 C 1.38358 * 120.26510 * 359.74385 * 15 14 13 21 21 C 1.37974 * 120.13153 * 0.02562 * 20 15 14 22 22 C 1.37220 * 115.06017 * 0.51178 * 11 10 9 23 23 S 1.71011 * 109.07910 * 359.72541 * 22 11 10 24 24 H 0.96995 * 120.00235 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.07280 * 0.02562 * 13 12 11 26 26 H 1.08006 * 119.93784 * 180.23573 * 14 13 12 27 27 H 1.08000 * 119.92887 * 180.02562 * 20 15 14 28 28 H 1.08004 * 120.06161 * 180.02562 * 21 20 15 29 29 H 1.08000 * 125.46700 * 179.74590 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0950 1.6965 -1.2125 5 1 1.2762 2.7465 -0.0006 6 1 3.0950 1.6965 1.2125 7 6 2.0083 -1.2139 -0.0005 8 1 3.0883 -1.2139 -0.0001 9 6 1.3090 -2.4253 0.0048 10 7 1.8590 -3.6207 0.0044 11 6 1.0247 -4.6337 0.0145 12 6 1.4841 -6.0428 0.0203 13 6 0.5543 -7.0823 0.0305 14 6 0.9880 -8.3921 0.0315 15 6 2.3423 -8.6753 0.0325 16 6 2.8094 -10.1081 0.0388 17 9 2.9546 -10.5454 1.3598 18 9 1.8675 -10.9086 -0.6165 19 9 4.0396 -10.2004 -0.6208 20 6 3.2695 -7.6484 0.0272 21 6 2.8479 -6.3346 0.0215 22 6 -0.3043 -4.2922 0.0130 23 16 -0.4434 -2.5877 0.0055 24 1 -0.4850 0.8400 -0.0004 25 1 -0.5031 -6.8625 0.0338 26 1 0.2689 -9.1980 0.0355 27 1 4.3253 -7.8756 0.0277 28 1 3.5726 -5.5339 0.0169 29 1 -1.1302 -4.9881 0.0163 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000113921.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:58 Heat of formation + Delta-G solvation = -127.045365 kcal Electronic energy + Delta-G solvation = -20351.453816 eV Core-core repulsion = 16528.415513 eV Total energy + Delta-G solvation = -3823.038303 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 299.029 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -51.16527 -48.67708 -48.62704 -40.64226 -38.97437 -36.04544 -33.45080 -32.18918 -30.73576 -28.36443 -27.10727 -24.67057 -23.54902 -22.81256 -20.33291 -19.75998 -19.49570 -19.40063 -19.32951 -17.67245 -16.99459 -16.58157 -15.86464 -15.74234 -15.47765 -15.30443 -15.08913 -14.99417 -14.93716 -14.87885 -14.78879 -14.45576 -14.04684 -13.92608 -13.76174 -13.48748 -12.95017 -12.54898 -12.49196 -12.11868 -12.03491 -11.47225 -11.44188 -10.48798 -10.07495 -9.89290 -9.84684 -8.92084 -8.89554 -6.73755 -0.35980 0.30487 0.68957 1.40359 1.47292 1.51239 1.56409 1.64847 1.96193 2.10254 2.17680 2.70381 2.71253 3.03499 3.24823 3.44838 3.67848 3.85895 3.90795 4.33270 4.35139 4.64023 4.69623 4.90772 4.94874 5.00887 5.14355 5.21005 5.56766 5.64758 5.76400 5.91257 6.37768 6.40353 7.70511 7.99390 Molecular weight = 299.03amu Principal moments of inertia in cm(-1) A = 0.036611 B = 0.003195 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.618987 B = 8761.963152 C = 9352.078333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.021 3.979 3 Si 1.018 2.982 4 H -0.256 1.256 5 H -0.257 1.257 6 H -0.256 1.256 7 C -0.398 4.398 8 H 0.104 0.896 9 C 0.169 3.831 10 N -0.617 5.617 11 C 0.111 3.889 12 C 0.013 3.987 13 C -0.116 4.116 14 C -0.062 4.062 15 C -0.202 4.202 16 C 0.520 3.480 17 F -0.179 7.179 18 F -0.176 7.176 19 F -0.178 7.178 20 C -0.067 4.067 21 C -0.111 4.111 22 C -0.454 4.454 23 S 0.112 5.888 24 H 0.313 0.687 25 H 0.144 0.856 26 H 0.162 0.838 27 H 0.154 0.846 28 H 0.127 0.873 29 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.849 -9.696 0.058 9.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.200 4.200 3 Si 0.836 3.164 4 H -0.180 1.180 5 H -0.181 1.181 6 H -0.180 1.180 7 C -0.440 4.440 8 H 0.121 0.879 9 C -0.083 4.083 10 N -0.339 5.339 11 C -0.027 4.027 12 C 0.010 3.990 13 C -0.135 4.135 14 C -0.080 4.080 15 C -0.204 4.204 16 C 0.466 3.534 17 F -0.161 7.161 18 F -0.157 7.157 19 F -0.159 7.159 20 C -0.085 4.085 21 C -0.130 4.130 22 C -0.598 4.598 23 S 0.373 5.627 24 H 0.127 0.873 25 H 0.161 0.839 26 H 0.180 0.820 27 H 0.172 0.828 28 H 0.145 0.855 29 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.286 -8.896 0.048 8.988 hybrid contribution 0.434 -0.488 0.012 0.653 sum 1.720 -9.383 0.060 9.540 Atomic orbital electron populations 1.68766 1.09030 1.32891 1.31943 1.27182 0.95926 1.05567 0.91279 0.84666 0.78313 0.72992 0.80468 1.18001 1.18109 1.18000 1.19332 0.96199 0.88231 1.40267 0.87861 1.24294 0.92522 0.94752 0.96780 1.67285 1.35546 0.97548 1.33533 1.19200 0.88944 0.92864 1.01723 1.18866 0.94161 0.90451 0.95497 1.21299 1.00240 0.91163 1.00775 1.21017 0.94136 0.97123 0.95753 1.20083 0.96139 0.91255 1.12888 1.18075 0.74868 0.86852 0.73566 1.93217 1.95605 1.91106 1.36148 1.93181 1.65027 1.76209 1.81323 1.93178 1.44824 1.96786 1.81157 1.20993 1.00447 0.90899 0.96111 1.21281 0.95231 0.96625 0.99899 1.26684 0.99789 1.04242 1.29114 1.84052 1.10694 0.95241 1.72725 0.87339 0.83862 0.82007 0.82798 0.85475 0.82510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.50 10.64 21.87 0.23 -36.27 15 2 C 0.02 0.93 5.50 85.33 0.47 1.40 15 3 Si 1.02 33.20 29.56 68.60 2.03 35.23 15 4 H -0.26 -8.19 7.11 99.48 0.71 -7.48 15 5 H -0.26 -7.69 7.11 99.48 0.71 -6.99 15 6 H -0.26 -8.19 7.11 99.48 0.71 -7.48 15 7 C -0.40 -20.15 9.44 23.14 0.22 -19.93 15 8 H 0.10 5.06 7.85 -2.91 -0.02 5.03 15 9 C 0.17 9.13 7.11 85.13 0.61 9.73 15 10 N -0.62 -32.96 10.01 -183.95 -1.84 -34.80 15 11 C 0.11 5.37 6.65 41.65 0.28 5.64 15 12 C 0.01 0.51 5.88 -20.03 -0.12 0.40 15 13 C -0.12 -3.68 9.48 22.50 0.21 -3.46 15 14 C -0.06 -1.63 9.38 22.24 0.21 -1.42 15 15 C -0.20 -5.36 5.46 -19.80 -0.11 -5.47 15 16 C 0.52 12.29 3.36 71.24 0.24 12.53 15 17 F -0.18 -4.32 17.30 44.97 0.78 -3.54 15 18 F -0.18 -4.00 16.45 44.97 0.74 -3.26 15 19 F -0.18 -4.21 16.45 44.97 0.74 -3.47 15 20 C -0.07 -1.91 9.38 22.24 0.21 -1.70 15 21 C -0.11 -4.01 9.63 22.50 0.22 -3.79 15 22 C -0.45 -21.23 10.41 67.58 0.70 -20.53 15 23 S 0.11 5.58 20.12 -56.49 -1.14 4.44 15 24 H 0.31 12.56 8.29 -92.71 -0.77 11.79 15 25 H 0.14 4.17 6.61 -2.91 -0.02 4.15 15 26 H 0.16 3.19 7.59 -2.91 -0.02 3.17 15 27 H 0.15 3.60 7.59 -2.91 -0.02 3.58 15 28 H 0.13 4.91 7.68 -2.91 -0.02 4.89 15 29 H 0.16 6.36 6.84 -2.91 -0.02 6.34 15 Total: -1.00 -57.16 286.01 5.90 -51.26 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 1.22 Total: 17.01 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: 3.13 Total: -26.61 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -1.61 Total: -71.07 kcal Atomic # 9 Polarization: -12.52 SS G_CDS: 2.26 Total: -10.27 kcal Atomic # 14 Polarization: 33.20 SS G_CDS: 2.03 Total: 35.23 kcal Atomic # 16 Polarization: 5.58 SS G_CDS: -1.14 Total: 4.44 kcal Total: -57.16 5.90 -51.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000113921.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.788 kcal (2) G-P(sol) polarization free energy of solvation -57.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds