Wall clock time and date at job start Tue Mar 31 2020 04:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46494 * 119.99959 * 2 1 4 4 C 1.50697 * 109.47279 * 269.99355 * 3 2 1 5 5 H 1.08003 * 119.99684 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00593 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99436 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00376 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47486 * 59.99969 * 8 6 4 10 10 H 1.48507 * 109.47385 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47373 * 299.99790 * 8 6 4 12 12 C 1.34774 * 119.99611 * 179.97438 * 2 1 3 13 13 O 1.21283 * 120.00097 * 180.02562 * 12 2 1 14 14 C 1.50703 * 120.00269 * 0.02562 * 12 2 1 15 15 C 1.53002 * 109.47215 * 179.97438 * 14 12 2 16 16 N 1.46896 * 109.47016 * 179.97438 * 15 14 12 17 17 C 1.46849 * 111.00075 * 51.59926 * 16 15 14 18 18 C 1.53031 * 109.52391 * 185.84024 * 17 16 15 19 19 C 1.53122 * 109.27509 * 300.81630 * 18 17 16 20 20 C 1.53113 * 109.16376 * 57.65702 * 19 18 17 21 21 C 1.46849 * 110.99742 * 175.80388 * 16 15 14 22 22 H 1.08998 * 109.45556 * 294.17302 * 21 16 15 23 23 C 1.53000 * 109.46471 * 54.14729 * 21 16 15 24 24 C 1.52997 * 109.47416 * 184.29303 * 23 21 16 25 25 O 1.42896 * 109.47362 * 174.84300 * 24 23 21 26 26 H 1.08991 * 109.47310 * 270.00581 * 1 2 3 27 27 H 1.09001 * 109.46310 * 30.00580 * 1 2 3 28 28 H 1.09000 * 109.46670 * 149.99887 * 1 2 3 29 29 H 1.09002 * 109.47349 * 29.99545 * 3 2 1 30 30 H 1.09006 * 109.46911 * 149.99433 * 3 2 1 31 31 H 0.97004 * 119.99887 * 180.02562 * 7 6 4 32 32 H 1.08991 * 109.47475 * 59.99371 * 14 12 2 33 33 H 1.09004 * 109.46490 * 299.99283 * 14 12 2 34 34 H 1.09000 * 109.47217 * 59.99634 * 15 14 12 35 35 H 1.08997 * 109.47006 * 300.00161 * 15 14 12 36 36 H 1.09000 * 109.46321 * 65.81742 * 17 16 15 37 37 H 1.09004 * 109.44523 * 305.84417 * 17 16 15 38 38 H 1.09001 * 109.50325 * 180.87979 * 18 17 16 39 39 H 1.08997 * 109.53997 * 60.77620 * 18 17 16 40 40 H 1.09006 * 109.52348 * 297.74598 * 19 18 17 41 41 H 1.08999 * 109.52412 * 177.56631 * 19 18 17 42 42 H 1.08999 * 109.50457 * 182.40443 * 20 19 18 43 43 H 1.09004 * 109.50691 * 62.28309 * 20 19 18 44 44 H 1.09004 * 109.47198 * 64.28805 * 23 21 16 45 45 H 1.09008 * 109.46784 * 304.29286 * 23 21 16 46 46 H 1.09004 * 109.47263 * 54.83846 * 24 23 21 47 47 H 1.09008 * 109.46986 * 294.84283 * 24 23 21 48 48 H 0.96698 * 113.99982 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4489 1.7037 -1.4208 5 1 2.0977 1.0960 -2.2417 6 6 3.1271 2.8773 -1.6728 7 7 3.5552 3.6170 -0.6731 8 14 3.4379 3.4168 -3.4339 9 1 2.1403 3.5951 -4.1334 10 1 4.1817 4.7022 -3.4340 11 1 4.2398 2.3816 -4.1346 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0005 15 6 2.3795 -3.6353 0.0005 16 7 1.6450 -4.9074 0.0011 17 6 0.6440 -4.9377 -1.0729 18 6 -0.1973 -6.2103 -0.9523 19 6 0.7192 -7.4331 -1.0488 20 6 1.7820 -7.3527 0.0505 21 6 2.5659 -6.0469 -0.0992 22 1 3.0606 -6.0295 -1.0703 23 6 3.6160 -5.9528 1.0096 24 6 4.6378 -7.0790 0.8412 25 8 5.6836 -6.9210 1.8021 26 1 -0.3633 0.0001 1.0276 27 1 -0.3632 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6084 2.0284 0.5138 30 1 3.1500 1.1383 0.5140 31 1 4.0320 4.4429 -0.8504 32 1 0.7590 -2.5303 -0.8895 33 1 0.7584 -2.5298 0.8904 34 1 3.0062 -3.5776 0.8905 35 1 3.0062 -3.5776 -0.8894 36 1 1.1478 -4.9255 -2.0394 37 1 -0.0038 -4.0649 -0.9899 38 1 -0.9299 -6.2400 -1.7588 39 1 -0.7128 -6.2168 0.0080 40 1 1.2048 -7.4483 -2.0246 41 1 0.1300 -8.3410 -0.9201 42 1 2.4635 -8.1986 -0.0396 43 1 1.2982 -7.3768 1.0270 44 1 3.1290 -6.0462 1.9803 45 1 4.1233 -4.9898 0.9488 46 1 5.0588 -7.0405 -0.1636 47 1 4.1471 -8.0405 0.9929 48 1 6.3684 -7.6020 1.7537 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034674210.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:04 Heat of formation + Delta-G solvation = -94.468030 kcal Electronic energy + Delta-G solvation = -25087.619076 eV Core-core repulsion = 21563.006328 eV Total energy + Delta-G solvation = -3524.612748 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.88354 -38.73481 -37.03446 -34.86826 -34.21494 -33.29152 -32.57827 -30.12618 -28.64696 -27.66643 -25.82674 -24.91058 -24.07203 -22.91708 -21.29998 -20.96220 -19.81253 -18.29772 -17.64427 -16.61398 -16.47409 -15.67779 -15.57206 -15.27987 -15.19799 -15.05586 -14.35022 -14.32019 -14.02683 -13.79006 -13.50559 -13.20888 -13.07399 -12.37262 -12.26712 -12.14632 -12.05262 -11.89853 -11.81989 -11.62805 -11.42599 -11.14422 -11.11654 -11.06081 -10.89139 -10.80028 -10.54682 -10.36662 -10.27302 -10.14236 -10.03700 -9.62266 -8.84482 -8.41657 -8.33937 -7.60446 -6.02433 -4.07335 3.32291 3.36808 3.38737 3.49574 3.55311 3.98968 4.24223 4.46767 4.54443 4.66300 4.70555 4.85405 5.02331 5.03952 5.15490 5.19265 5.23351 5.27168 5.30210 5.32581 5.38751 5.42963 5.51021 5.59853 5.68276 5.71231 5.75446 5.80921 5.86749 5.95058 5.97047 6.04319 6.08087 6.11042 6.23838 6.23995 6.24990 7.03849 7.04763 7.11380 7.42786 7.47604 7.57501 7.93999 8.25808 8.46102 8.92139 9.13792 9.57621 11.05628 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.016888 B = 0.003255 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.584428 B = 8600.085144 C = 9331.048016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.604 5.604 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.504 3.496 13 O -0.544 6.544 14 C -0.140 4.140 15 C 0.069 3.931 16 N -0.533 5.533 17 C 0.047 3.953 18 C -0.116 4.116 19 C -0.122 4.122 20 C -0.113 4.113 21 C 0.092 3.908 22 H 0.041 0.959 23 C -0.121 4.121 24 C 0.078 3.922 25 O -0.573 6.573 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.264 0.736 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.042 0.958 36 H 0.032 0.968 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.043 0.957 47 H 0.046 0.954 48 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.039 -23.586 1.309 24.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.126 3.874 4 C -0.566 4.566 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.290 3.710 13 O -0.422 6.422 14 C -0.180 4.180 15 C -0.059 4.059 16 N -0.258 5.258 17 C -0.081 4.081 18 C -0.154 4.154 19 C -0.160 4.160 20 C -0.151 4.151 21 C -0.017 4.017 22 H 0.059 0.941 23 C -0.159 4.159 24 C 0.000 4.000 25 O -0.378 6.378 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -6.916 -22.889 1.963 23.992 hybrid contribution 0.803 0.051 -2.023 2.177 sum -6.113 -22.838 -0.060 23.642 Atomic orbital electron populations 1.21624 0.81492 1.02437 1.00411 1.48156 1.06152 1.07883 1.71405 1.19271 0.92580 0.78167 0.97404 1.21400 1.36553 1.06283 0.92319 0.92609 1.24940 0.95370 0.96404 0.97420 1.69929 1.38324 1.14375 1.30766 0.86559 0.78333 0.77825 0.84694 1.20258 1.21137 1.20228 1.20292 0.88085 0.85145 0.77460 1.90669 1.13981 1.87337 1.50217 1.21767 0.99377 0.92987 1.03876 1.21892 0.94948 0.86437 1.02579 1.61973 1.15604 1.02053 1.46189 1.22215 0.94680 0.98822 0.92353 1.21588 0.97573 0.93887 1.02357 1.21591 0.97417 0.98207 0.98750 1.21702 0.97541 0.95922 0.99916 1.21482 0.92016 0.91131 0.97058 0.94087 1.21642 0.95119 0.99399 0.99725 1.22192 0.88537 0.98076 0.91226 1.86514 1.37285 1.55342 1.58641 0.93722 0.90879 0.92534 0.95056 0.93847 0.92663 0.89519 0.88831 0.89360 0.94010 0.94926 0.89925 0.91683 0.91034 0.92384 0.91900 0.91702 0.90859 0.90360 0.90152 0.93897 0.93598 0.77587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.35 10.24 59.85 0.61 1.97 16 2 N -0.60 -13.09 2.86 -182.95 -0.52 -13.61 16 3 C 0.25 6.57 5.16 -5.20 -0.03 6.54 16 4 C -0.53 -15.23 9.39 -34.44 -0.32 -15.55 16 5 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -27.02 13.29 55.43 0.74 -26.29 16 8 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.50 10.67 7.67 -10.99 -0.08 10.58 16 13 O -0.54 -13.98 15.56 5.56 0.09 -13.89 16 14 C -0.14 -2.11 3.74 -27.88 -0.10 -2.21 16 15 C 0.07 1.02 3.73 -3.83 -0.01 1.00 16 16 N -0.53 -6.35 4.60 -226.69 -1.04 -7.39 16 17 C 0.05 0.49 5.03 -3.84 -0.02 0.47 16 18 C -0.12 -0.98 6.09 -26.65 -0.16 -1.14 16 19 C -0.12 -0.96 6.00 -26.61 -0.16 -1.12 16 20 C -0.11 -0.95 5.09 -26.65 -0.14 -1.09 16 21 C 0.09 0.97 1.92 -67.72 -0.13 0.84 16 22 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 23 C -0.12 -1.37 4.78 -26.73 -0.13 -1.50 16 24 C 0.08 0.73 6.65 37.16 0.25 0.98 16 25 O -0.57 -6.06 13.66 -35.23 -0.48 -6.54 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 28 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 29 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 30 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.09 1.16 5.45 -51.93 -0.28 0.88 16 33 H 0.09 1.25 8.11 -51.93 -0.42 0.83 16 34 H 0.09 1.42 6.33 -51.93 -0.33 1.09 16 35 H 0.04 0.69 8.09 -51.93 -0.42 0.27 16 36 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.84 5.84 -51.93 -0.30 0.54 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.46 6.70 -51.93 -0.35 0.11 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.08 1.10 6.17 -51.92 -0.32 0.78 16 46 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.05 0.35 6.82 -51.92 -0.35 -0.01 16 48 H 0.38 2.11 9.12 45.56 0.42 2.52 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -34.78 371.96 -8.86 -43.63 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.69 Total: -0.08 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -0.52 Total: 1.45 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -0.83 Total: -47.29 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.39 Total: -20.43 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.78 -8.86 -43.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674210.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.834 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds