Wall clock time and date at job start Tue Mar 31 2020 05:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 119.99921 * 2 1 4 4 H 1.07999 * 120.00048 * 200.55484 * 3 2 1 5 5 C 1.38813 * 120.00102 * 20.54861 * 3 2 1 6 6 N 1.31623 * 119.99594 * 14.81282 * 5 3 2 7 7 Si 1.86800 * 120.00286 * 194.80890 * 5 3 2 8 8 H 1.48497 * 109.47204 * 85.01026 * 7 5 3 9 9 H 1.48504 * 109.47221 * 205.00974 * 7 5 3 10 10 H 1.48504 * 109.46838 * 325.00723 * 7 5 3 11 11 S 1.65595 * 120.00356 * 179.97438 * 2 1 3 12 12 O 1.42095 * 106.40480 * 156.46152 * 11 2 1 13 13 O 1.42104 * 106.39997 * 23.53868 * 11 2 1 14 14 C 1.76204 * 107.21705 * 270.00180 * 11 2 1 15 15 C 1.35513 * 120.04912 * 114.97639 * 14 11 2 16 16 C 1.39491 * 121.57835 * 179.74354 * 15 14 11 17 17 C 1.35501 * 121.58422 * 0.57498 * 16 15 14 18 18 C 1.41758 * 119.90233 * 359.43655 * 17 16 15 19 19 N 1.32338 * 131.01020 * 180.28124 * 18 17 16 20 20 S 1.55537 * 109.42030 * 179.97438 * 19 18 17 21 21 N 1.55535 * 100.20666 * 359.97438 * 20 19 18 22 22 C 1.32330 * 109.42095 * 0.02562 * 21 20 19 23 23 H 1.08998 * 109.47175 * 275.02394 * 1 2 3 24 24 H 1.08996 * 109.47150 * 35.02390 * 1 2 3 25 25 H 1.08998 * 109.46590 * 155.02361 * 1 2 3 26 26 H 0.97006 * 120.00089 * 179.97438 * 6 5 3 27 27 H 1.08001 * 119.20729 * 0.02562 * 15 14 11 28 28 H 1.08005 * 119.20974 * 180.30483 * 16 15 14 29 29 H 1.08007 * 120.04892 * 179.71094 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1781 1.2157 -0.3284 5 6 1.5219 2.3499 0.4220 6 7 0.3888 2.2819 1.0883 7 14 2.2851 4.0125 0.0442 8 1 1.8708 4.4505 -1.3129 9 1 1.8261 5.0071 1.0470 10 1 3.7650 3.9016 0.0985 11 16 2.2931 -1.4340 0.0006 12 8 3.5760 -1.1569 -0.5439 13 8 1.4114 -2.4067 -0.5434 14 6 2.5538 -1.8850 1.6839 15 6 1.9700 -3.0001 2.1860 16 6 2.1589 -3.3897 3.5120 17 6 2.9255 -2.6649 4.3623 18 6 3.5672 -1.4864 3.9053 19 7 4.3560 -0.6283 4.5321 20 16 4.7843 0.4958 3.5461 21 7 4.0420 0.0322 2.2604 22 6 3.3750 -1.0820 2.5149 23 1 -0.3633 0.0900 1.0237 24 1 -0.3633 0.8415 -0.5898 25 1 -0.3632 -0.9316 -0.4339 26 1 -0.0498 3.0952 1.3835 27 1 1.3472 -3.6041 1.5427 28 1 1.6791 -4.2883 3.8707 29 1 3.0511 -2.9871 5.3855 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049621.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:05 Heat of formation + Delta-G solvation = 22.290707 kcal Electronic energy + Delta-G solvation = -20422.605029 eV Core-core repulsion = 17179.802772 eV Total energy + Delta-G solvation = -3242.802257 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 299.018 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.37223 -36.19528 -35.71984 -35.56925 -34.35517 -33.40531 -31.55047 -29.91642 -27.10056 -26.49564 -23.55659 -22.15575 -21.94675 -19.18624 -18.42571 -17.38906 -16.85166 -16.69213 -15.94200 -15.31583 -15.27280 -14.63438 -14.60229 -14.20979 -13.26187 -12.85171 -12.39035 -11.95825 -11.90924 -11.69935 -11.50964 -11.43302 -11.15443 -11.06610 -11.02086 -10.90901 -10.64927 -10.63312 -10.33373 -10.19616 -10.12384 -9.60964 -9.32588 -8.33912 -8.28544 -8.12016 -6.64277 -3.98237 0.13475 1.67414 1.81984 1.86961 2.06983 2.22272 3.07799 3.11880 3.16432 3.72619 3.94572 4.38544 4.67631 4.73644 5.02158 5.06888 5.31579 5.40528 5.57973 5.86915 5.96619 6.28023 6.38730 6.48498 6.59242 6.62822 6.81651 7.05251 7.21550 7.24840 7.36905 8.24987 8.57440 9.06048 10.31173 Molecular weight = 299.02amu Principal moments of inertia in cm(-1) A = 0.014588 B = 0.009202 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.944907 B = 3041.948963 C = 4163.207887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.796 5.796 3 C -0.202 4.202 4 H 0.122 0.878 5 C 0.025 3.975 6 N -0.830 5.830 7 Si 0.926 3.074 8 H -0.270 1.270 9 H -0.280 1.280 10 H -0.261 1.261 11 S 2.515 3.485 12 O -0.971 6.971 13 O -1.005 7.005 14 C -0.594 4.594 15 C -0.022 4.022 16 C -0.110 4.110 17 C -0.050 4.050 18 C 0.065 3.935 19 N -0.608 5.608 20 S 0.764 5.236 21 N -0.546 5.546 22 C 0.146 3.854 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.275 0.725 27 H 0.146 0.854 28 H 0.136 0.864 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.976 -2.702 5.880 6.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.619 5.619 3 C -0.352 4.352 4 H 0.140 0.860 5 C -0.188 4.188 6 N -0.471 5.471 7 Si 0.751 3.249 8 H -0.195 1.195 9 H -0.206 1.206 10 H -0.185 1.185 11 S 2.612 3.388 12 O -0.961 6.961 13 O -0.994 6.994 14 C -0.676 4.676 15 C -0.048 4.048 16 C -0.136 4.136 17 C -0.075 4.075 18 C -0.096 4.096 19 N -0.459 5.459 20 S 0.811 5.189 21 N -0.395 5.395 22 C -0.014 4.014 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.163 0.837 28 H 0.154 0.846 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.527 -1.551 5.662 6.848 hybrid contribution -0.871 -0.614 0.822 1.345 sum 2.657 -2.164 6.483 7.333 Atomic orbital electron populations 1.21369 0.79208 1.00137 1.02058 1.54556 1.13243 1.18951 1.75104 1.20245 1.00086 0.82300 1.32593 0.86042 1.25808 0.96678 1.01149 0.95178 1.70130 1.15913 1.30176 1.30882 0.85906 0.80205 0.80047 0.78725 1.19541 1.20560 1.18463 1.12628 0.74220 0.74672 0.77299 1.93367 1.41065 1.84229 1.77429 1.93312 1.65383 1.62136 1.78587 1.31823 1.03572 1.00836 1.31408 1.20641 0.95115 0.93747 0.95284 1.20882 0.98760 1.00104 0.93851 1.20245 0.96224 0.91152 0.99911 1.21384 0.98864 0.97839 0.91505 1.72166 1.22150 1.12854 1.38691 1.78410 1.33385 1.22356 0.84747 1.72460 1.17457 1.17266 1.32354 1.20355 0.97367 0.90968 0.92743 0.92890 0.90736 0.93374 0.91431 0.83664 0.84647 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.64 8.94 59.85 0.53 3.17 15 2 N -0.80 -19.37 3.31 -66.69 -0.22 -19.60 15 3 C -0.20 -5.02 9.02 -15.06 -0.14 -5.15 15 4 H 0.12 3.11 7.16 -52.49 -0.38 2.73 15 5 C 0.02 0.58 5.07 -17.43 -0.09 0.49 15 6 N -0.83 -19.87 10.67 55.49 0.59 -19.28 15 7 Si 0.93 18.48 29.58 -169.99 -5.03 13.46 15 8 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 9 H -0.28 -5.50 7.11 56.52 0.40 -5.10 15 10 H -0.26 -5.15 7.11 56.52 0.40 -4.75 15 11 S 2.52 60.76 5.57 -107.50 -0.60 60.16 15 12 O -0.97 -25.95 16.73 -57.17 -0.96 -26.90 15 13 O -1.00 -24.52 15.46 -57.17 -0.88 -25.40 15 14 C -0.59 -12.94 5.93 -39.21 -0.23 -13.17 15 15 C -0.02 -0.40 9.43 -40.09 -0.38 -0.78 15 16 C -0.11 -1.63 9.89 -40.09 -0.40 -2.02 15 17 C -0.05 -0.79 10.09 -39.22 -0.40 -1.19 15 18 C 0.06 1.24 7.16 -83.17 -0.60 0.65 15 19 N -0.61 -11.08 11.44 25.63 0.29 -10.79 15 20 S 0.76 12.99 23.60 -107.50 -2.54 10.46 15 21 N -0.55 -11.94 10.96 25.62 0.28 -11.66 15 22 C 0.15 3.20 6.86 -83.17 -0.57 2.63 15 23 H 0.05 1.19 7.40 -51.93 -0.38 0.81 15 24 H 0.07 1.65 7.22 -51.93 -0.37 1.28 15 25 H 0.05 0.99 6.91 -51.93 -0.36 0.63 15 26 H 0.28 6.18 8.31 -40.82 -0.34 5.84 15 27 H 0.15 2.39 7.22 -52.49 -0.38 2.01 15 28 H 0.14 1.40 8.06 -52.48 -0.42 0.98 15 29 H 0.13 1.68 8.06 -52.48 -0.42 1.25 15 LS Contribution 281.37 15.07 4.24 4.24 Total: -1.00 -30.99 281.37 -8.93 -39.92 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -1.85 Total: 0.77 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -2.26 Total: -15.37 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: 0.95 Total: -61.32 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -1.84 Total: -52.31 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.46 kcal Atomic # 16 Polarization: 73.75 SS G_CDS: -3.14 Total: 70.62 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.99 -8.93 -39.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049621.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.211 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds