Wall clock time and date at job start Tue Mar 31 2020 05:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 119.99921 * 2 1 4 4 H 1.07999 * 120.00048 * 200.55484 * 3 2 1 5 5 C 1.38813 * 120.00102 * 20.54861 * 3 2 1 6 6 N 1.31623 * 119.99594 * 14.81282 * 5 3 2 7 7 Si 1.86800 * 120.00286 * 194.80890 * 5 3 2 8 8 H 1.48497 * 109.47204 * 85.01026 * 7 5 3 9 9 H 1.48504 * 109.47221 * 205.00974 * 7 5 3 10 10 H 1.48504 * 109.46838 * 325.00723 * 7 5 3 11 11 S 1.65595 * 120.00356 * 179.97438 * 2 1 3 12 12 O 1.42095 * 106.40480 * 156.46152 * 11 2 1 13 13 O 1.42104 * 106.39997 * 23.53868 * 11 2 1 14 14 C 1.76204 * 107.21705 * 270.00180 * 11 2 1 15 15 C 1.35513 * 120.04912 * 114.97639 * 14 11 2 16 16 C 1.39491 * 121.57835 * 179.74354 * 15 14 11 17 17 C 1.35501 * 121.58422 * 0.57498 * 16 15 14 18 18 C 1.41758 * 119.90233 * 359.43655 * 17 16 15 19 19 N 1.32338 * 131.01020 * 180.28124 * 18 17 16 20 20 S 1.55537 * 109.42030 * 179.97438 * 19 18 17 21 21 N 1.55535 * 100.20666 * 359.97438 * 20 19 18 22 22 C 1.32330 * 109.42095 * 0.02562 * 21 20 19 23 23 H 1.08998 * 109.47175 * 275.02394 * 1 2 3 24 24 H 1.08996 * 109.47150 * 35.02390 * 1 2 3 25 25 H 1.08998 * 109.46590 * 155.02361 * 1 2 3 26 26 H 0.97006 * 120.00089 * 179.97438 * 6 5 3 27 27 H 1.08001 * 119.20729 * 0.02562 * 15 14 11 28 28 H 1.08005 * 119.20974 * 180.30483 * 16 15 14 29 29 H 1.08007 * 120.04892 * 179.71094 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1781 1.2157 -0.3284 5 6 1.5219 2.3499 0.4220 6 7 0.3888 2.2819 1.0883 7 14 2.2851 4.0125 0.0442 8 1 1.8708 4.4505 -1.3129 9 1 1.8261 5.0071 1.0470 10 1 3.7650 3.9016 0.0985 11 16 2.2931 -1.4340 0.0006 12 8 3.5760 -1.1569 -0.5439 13 8 1.4114 -2.4067 -0.5434 14 6 2.5538 -1.8850 1.6839 15 6 1.9700 -3.0001 2.1860 16 6 2.1589 -3.3897 3.5120 17 6 2.9255 -2.6649 4.3623 18 6 3.5672 -1.4864 3.9053 19 7 4.3560 -0.6283 4.5321 20 16 4.7843 0.4958 3.5461 21 7 4.0420 0.0322 2.2604 22 6 3.3750 -1.0820 2.5149 23 1 -0.3633 0.0900 1.0237 24 1 -0.3633 0.8415 -0.5898 25 1 -0.3632 -0.9316 -0.4339 26 1 -0.0498 3.0952 1.3835 27 1 1.3472 -3.6041 1.5427 28 1 1.6791 -4.2883 3.8707 29 1 3.0511 -2.9871 5.3855 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049621.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:04 Heat of formation + Delta-G solvation = -0.814934 kcal Electronic energy + Delta-G solvation = -20423.606965 eV Core-core repulsion = 17179.802772 eV Total energy + Delta-G solvation = -3243.804192 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 299.018 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.81082 -37.91054 -37.48457 -37.24539 -36.38410 -34.87513 -33.29801 -31.35410 -28.52590 -28.26332 -25.35960 -23.58726 -23.45803 -20.64771 -20.20420 -19.00504 -18.53179 -18.41248 -17.63834 -16.87025 -16.80302 -16.30459 -16.14064 -15.79865 -15.06517 -14.57415 -13.77420 -13.67489 -13.34515 -13.26538 -13.02548 -12.98389 -12.93910 -12.70326 -12.67792 -12.61337 -12.42037 -12.33594 -12.10586 -11.89883 -11.79682 -11.27502 -11.03339 -9.95138 -9.72743 -9.67005 -8.34307 -5.83860 -1.26338 -0.09949 0.36785 0.45633 0.57653 0.82700 1.46254 1.50364 1.58158 2.22414 2.37777 2.65285 2.94961 3.19690 3.22329 3.78004 3.88308 4.06084 4.15746 4.27572 4.57788 4.64001 4.86906 5.03904 5.15975 5.19755 5.25784 5.27502 5.43657 5.61891 5.85578 6.46681 6.82660 7.29591 8.63487 Molecular weight = 299.02amu Principal moments of inertia in cm(-1) A = 0.014588 B = 0.009202 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.944907 B = 3041.948963 C = 4163.207887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -0.819 5.819 3 C -0.244 4.244 4 H 0.100 0.900 5 C -0.002 4.002 6 N -0.864 5.864 7 Si 0.975 3.025 8 H -0.267 1.267 9 H -0.273 1.273 10 H -0.263 1.263 11 S 2.557 3.443 12 O -1.005 7.005 13 O -1.012 7.012 14 C -0.647 4.647 15 C 0.005 3.995 16 C -0.108 4.108 17 C -0.030 4.030 18 C 0.043 3.957 19 N -0.606 5.606 20 S 0.835 5.165 21 N -0.605 5.605 22 C 0.120 3.880 23 H 0.044 0.956 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.276 0.724 27 H 0.161 0.839 28 H 0.194 0.806 29 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.071 -4.524 8.301 9.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.644 5.644 3 C -0.390 4.390 4 H 0.117 0.883 5 C -0.210 4.210 6 N -0.505 5.505 7 Si 0.798 3.202 8 H -0.192 1.192 9 H -0.197 1.197 10 H -0.187 1.187 11 S 2.657 3.343 12 O -0.995 6.995 13 O -1.002 7.002 14 C -0.735 4.735 15 C -0.021 4.021 16 C -0.133 4.133 17 C -0.055 4.055 18 C -0.116 4.116 19 N -0.458 5.458 20 S 0.882 5.118 21 N -0.456 5.456 22 C -0.038 4.038 23 H 0.063 0.937 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.179 0.821 28 H 0.211 0.789 29 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.597 -3.307 8.030 9.399 hybrid contribution -0.751 -0.405 0.275 0.897 sum 2.846 -3.712 8.305 9.532 Atomic orbital electron populations 1.21248 0.78547 1.00325 1.01479 1.54050 1.13603 1.18610 1.78111 1.19903 0.99426 0.83393 1.36293 0.88256 1.26283 0.96990 1.03057 0.94718 1.70183 1.17099 1.30564 1.32627 0.85197 0.79272 0.77026 0.78731 1.19162 1.19746 1.18717 1.09855 0.73213 0.74036 0.77242 1.93331 1.42548 1.84859 1.78795 1.93306 1.65543 1.62087 1.79231 1.31205 1.08432 1.04445 1.29417 1.21150 0.92082 0.91575 0.97249 1.21389 0.98392 1.01687 0.91794 1.20919 0.93720 0.88935 1.01904 1.21764 0.99963 0.99367 0.90525 1.72124 1.21831 1.12955 1.38912 1.77997 1.30778 1.20544 0.82492 1.72241 1.19349 1.18407 1.35555 1.20583 0.97830 0.91202 0.94220 0.93696 0.91442 0.92244 0.91406 0.82106 0.78912 0.80596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.97 8.94 127.77 1.14 7.11 15 2 N -0.82 -41.28 3.31 -364.90 -1.21 -42.49 15 3 C -0.24 -12.74 9.02 84.03 0.76 -11.99 15 4 H 0.10 5.45 7.16 -2.91 -0.02 5.43 15 5 C 0.00 -0.09 5.07 84.86 0.43 0.34 15 6 N -0.86 -42.81 10.67 21.65 0.23 -42.58 15 7 Si 0.98 39.08 29.58 68.60 2.03 41.11 15 8 H -0.27 -10.39 7.11 99.48 0.71 -9.68 15 9 H -0.27 -10.43 7.11 99.48 0.71 -9.72 15 10 H -0.26 -10.45 7.11 99.48 0.71 -9.74 15 11 S 2.56 125.44 5.57 -56.49 -0.31 125.12 15 12 O -1.01 -55.52 16.73 -128.00 -2.14 -57.66 15 13 O -1.01 -49.06 15.46 -128.00 -1.98 -51.04 15 14 C -0.65 -27.65 5.93 22.51 0.13 -27.51 15 15 C 0.01 0.17 9.43 21.94 0.21 0.38 15 16 C -0.11 -2.59 9.89 21.94 0.22 -2.37 15 17 C -0.03 -0.80 10.09 22.51 0.23 -0.57 15 18 C 0.04 1.55 7.16 41.97 0.30 1.85 15 19 N -0.61 -20.58 11.44 -72.83 -0.83 -21.41 15 20 S 0.83 27.54 23.60 -56.49 -1.33 26.21 15 21 N -0.60 -26.68 10.96 -72.86 -0.80 -27.48 15 22 C 0.12 5.20 6.86 41.97 0.29 5.49 15 23 H 0.04 2.09 7.40 -2.39 -0.02 2.07 15 24 H 0.07 3.13 7.22 -2.39 -0.02 3.11 15 25 H 0.06 2.49 6.91 -2.39 -0.02 2.48 15 26 H 0.28 12.79 8.31 -92.70 -0.77 12.02 15 27 H 0.16 4.71 7.22 -2.91 -0.02 4.69 15 28 H 0.19 2.48 8.06 -2.91 -0.02 2.46 15 29 H 0.18 3.20 8.06 -2.91 -0.02 3.18 15 Total: -1.00 -69.77 281.37 -1.43 -71.21 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 1.21 Total: 6.29 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 3.70 Total: -27.28 kcal Atomic # 7 Polarization: -131.35 SS G_CDS: -2.61 Total: -133.96 kcal Atomic # 8 Polarization: -104.58 SS G_CDS: -4.12 Total: -108.70 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Atomic # 16 Polarization: 152.98 SS G_CDS: -1.65 Total: 151.33 kcal Total: -69.77 -1.43 -71.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049621.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.394 kcal (2) G-P(sol) polarization free energy of solvation -69.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds