Wall clock time and date at job start Tue Mar 31 2020 05:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48497 * 109.47025 * 240.00207 * 3 2 1 5 5 H 1.48498 * 109.46692 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46740 * 119.99849 * 3 2 1 7 7 C 1.38950 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00444 * 179.97438 * 7 2 1 9 9 N 1.37105 * 120.00048 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99873 * 179.72298 * 9 7 2 11 11 O 1.21295 * 120.00056 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00080 * 180.02562 * 10 9 7 13 13 H 1.09000 * 115.54681 * 34.28311 * 12 10 9 14 14 C 1.52994 * 117.49790 * 248.61380 * 12 10 9 15 15 C 1.53000 * 117.49976 * 179.97438 * 12 10 9 16 16 H 1.08994 * 117.49771 * 359.97438 * 15 12 10 17 17 C 1.50697 * 117.49514 * 214.97905 * 15 12 10 18 18 C 1.38262 * 119.98258 * 299.71923 * 17 15 12 19 19 C 1.38208 * 120.03817 * 179.76370 * 18 17 15 20 20 C 1.38349 * 120.00059 * 0.52313 * 19 18 17 21 21 Cl 1.73593 * 120.02265 * 179.71888 * 20 19 18 22 22 C 1.38444 * 119.95937 * 359.73372 * 20 19 18 23 23 Cl 1.73603 * 120.01928 * 180.02562 * 22 20 19 24 24 C 1.38211 * 119.97953 * 120.00499 * 17 15 12 25 25 H 0.96999 * 119.99993 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00209 * 0.02562 * 9 7 2 27 27 H 1.08999 * 117.50145 * 359.97438 * 14 12 10 28 28 H 1.08999 * 117.49742 * 144.99812 * 14 12 10 29 29 H 1.07994 * 119.98252 * 0.02562 * 18 17 15 30 30 H 1.07997 * 119.99963 * 180.25583 * 19 18 17 31 31 H 1.07994 * 119.99647 * 359.94970 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0067 11 8 3.2102 -3.5578 -0.0118 12 6 1.2437 -4.8630 -0.0073 13 1 0.3027 -4.8623 -0.5573 14 6 1.3244 -5.7258 1.2536 15 6 2.0658 -6.1534 -0.0150 16 1 3.1516 -6.0583 -0.0201 17 6 1.5124 -7.3263 -0.7825 18 6 0.2866 -7.8631 -0.4348 19 6 -0.2243 -8.9357 -1.1410 20 6 0.4959 -9.4798 -2.1895 21 17 -0.1419 -10.8317 -3.0722 22 6 1.7258 -8.9456 -2.5342 23 17 2.6305 -9.6267 -3.8501 24 6 2.2332 -7.8685 -1.8297 25 1 -0.4850 0.8400 0.0004 26 1 0.3534 -2.3907 -0.0005 27 1 1.9228 -5.3498 2.0834 28 1 0.4364 -6.2928 1.5331 29 1 -0.2739 -7.4414 0.3863 30 1 -1.1837 -9.3519 -0.8715 31 1 3.1923 -7.4511 -2.0982 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068767458.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:23 Heat of formation + Delta-G solvation = -9.391172 kcal Electronic energy + Delta-G solvation = -18322.044968 eV Core-core repulsion = 15041.488718 eV Total energy + Delta-G solvation = -3280.556250 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 299.022 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.08055 -38.55762 -36.94585 -36.69755 -35.68712 -33.90971 -31.32883 -31.21138 -30.39607 -25.74028 -24.04030 -23.32746 -22.64033 -20.57232 -19.01993 -17.90509 -17.68822 -16.54039 -15.86222 -15.58639 -14.83852 -14.68503 -14.24774 -14.10263 -13.92911 -13.50061 -13.18373 -12.52243 -12.15000 -12.08306 -11.95795 -11.70942 -11.59015 -11.53090 -11.12899 -11.06414 -11.01760 -10.50026 -10.40897 -10.23965 -10.17704 -9.55645 -9.11358 -8.69255 -8.43907 -8.04270 -6.48277 -3.89069 0.74067 0.91147 1.65508 2.02134 3.09226 3.19285 3.22654 3.26994 3.61571 4.09654 4.28542 4.41355 4.46492 4.77759 4.92484 4.97695 5.05352 5.11869 5.25905 5.36032 5.52547 5.57515 5.73336 5.80533 5.92495 6.10275 6.18908 6.37785 6.40926 6.49153 7.48840 7.98717 8.53132 9.10174 9.47310 9.98281 10.68966 Molecular weight = 299.02amu Principal moments of inertia in cm(-1) A = 0.027846 B = 0.002880 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.273811 B = 9719.656924 C = 9987.508585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.303 4.303 8 H 0.104 0.896 9 N -0.552 5.552 10 C 0.464 3.536 11 O -0.596 6.596 12 C -0.147 4.147 13 H 0.113 0.887 14 C -0.150 4.150 15 C -0.102 4.102 16 H 0.130 0.870 17 C -0.020 4.020 18 C -0.107 4.107 19 C -0.095 4.095 20 C -0.041 4.041 21 Cl -0.058 7.058 22 C -0.026 4.026 23 Cl -0.053 7.053 24 C -0.092 4.092 25 H 0.273 0.727 26 H 0.394 0.606 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.781 -18.872 -2.349 19.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.433 4.433 8 H 0.121 0.879 9 N -0.186 5.186 10 C 0.249 3.751 11 O -0.482 6.482 12 C -0.168 4.168 13 H 0.131 0.869 14 C -0.187 4.187 15 C -0.121 4.121 16 H 0.148 0.852 17 C -0.021 4.021 18 C -0.125 4.125 19 C -0.114 4.114 20 C -0.069 4.069 21 Cl -0.029 7.029 22 C -0.054 4.054 23 Cl -0.024 7.024 24 C -0.110 4.110 25 H 0.083 0.917 26 H 0.228 0.772 27 H 0.123 0.877 28 H 0.118 0.882 29 H 0.159 0.841 30 H 0.160 0.840 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.097 -18.855 -2.558 19.143 hybrid contribution -0.272 0.696 -0.300 0.806 sum -2.369 -18.158 -2.859 18.534 Atomic orbital electron populations 1.69606 1.05977 1.28462 1.49812 1.25290 0.95647 0.99819 0.96996 0.85902 0.78803 0.80298 0.79161 1.19791 1.20885 1.19813 1.19696 0.93410 0.82185 1.47988 0.87861 1.41798 1.09322 1.04420 1.63027 1.18902 0.87544 0.83853 0.84755 1.90516 1.13751 1.87050 1.56886 1.22331 1.00805 0.91093 1.02602 0.86868 1.23084 1.02234 1.01848 0.91543 1.21030 0.99902 0.91514 0.99612 0.85232 1.19309 0.93623 0.94946 0.94183 1.21207 0.95613 0.95626 1.00035 1.20996 1.00026 0.96447 0.93898 1.20735 0.94439 0.94003 0.97718 1.98377 1.86149 1.43369 1.74964 1.20726 0.92905 0.97687 0.94062 1.98386 1.73781 1.84156 1.46106 1.20932 1.01293 0.94133 0.94687 0.91664 0.77237 0.87707 0.88169 0.84054 0.84043 0.83682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.01 13.05 55.50 0.72 -23.29 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.68 29.55 -169.99 -5.02 15.65 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 9 N -0.55 -13.77 5.29 -10.96 -0.06 -13.82 16 10 C 0.46 10.70 7.57 -10.98 -0.08 10.61 16 11 O -0.60 -15.80 15.83 5.54 0.09 -15.71 16 12 C -0.15 -2.47 5.82 -91.77 -0.53 -3.01 16 13 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 14 C -0.15 -2.03 9.56 -26.72 -0.26 -2.28 16 15 C -0.10 -1.48 5.56 -91.76 -0.51 -1.99 16 16 H 0.13 2.08 7.67 -51.93 -0.40 1.68 16 17 C -0.02 -0.25 5.61 -104.62 -0.59 -0.83 16 18 C -0.11 -1.11 9.30 -39.58 -0.37 -1.48 16 19 C -0.09 -0.93 9.83 -39.55 -0.39 -1.32 16 20 C -0.04 -0.46 6.32 -39.46 -0.25 -0.71 16 21 Cl -0.06 -0.60 27.96 -51.86 -1.45 -2.05 16 22 C -0.03 -0.31 6.32 -39.47 -0.25 -0.56 16 23 Cl -0.05 -0.61 27.96 -51.86 -1.45 -2.06 16 24 C -0.09 -1.13 9.52 -39.55 -0.38 -1.50 16 25 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 26 H 0.39 9.41 7.90 -40.82 -0.32 9.08 16 27 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.10 1.04 6.17 -51.93 -0.32 0.72 16 29 H 0.14 1.21 6.01 -52.49 -0.32 0.89 16 30 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 307.18 15.07 4.63 4.63 Total: -1.00 -29.79 307.18 -8.94 -38.73 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -2.56 Total: 8.90 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -3.84 Total: -10.99 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.67 Total: -37.11 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.09 Total: -15.71 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -2.90 Total: -4.10 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.79 -8.94 -38.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068767458.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.342 kcal (2) G-P(sol) polarization free energy of solvation -29.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds