Wall clock time and date at job start Tue Mar 31 2020 03:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53008 * 109.46514 * 2 1 4 4 C 1.52999 * 109.47368 * 240.00206 * 2 1 3 5 5 C 1.53000 * 109.47138 * 119.99716 * 2 1 3 6 6 N 1.46899 * 109.47007 * 75.45947 * 5 2 1 7 7 C 1.46899 * 111.00084 * 81.98275 * 6 5 2 8 8 C 1.50697 * 109.47040 * 74.12073 * 7 6 5 9 9 H 1.08003 * 119.99986 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00140 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99736 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00036 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47314 * 59.99883 * 12 10 8 14 14 H 1.48507 * 109.47202 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47234 * 299.99998 * 12 10 8 16 16 C 1.46906 * 110.99615 * 318.02868 * 6 5 2 17 17 C 1.50696 * 109.47419 * 300.38332 * 16 6 5 18 18 O 1.21282 * 119.99790 * 358.03754 * 17 16 6 19 19 N 1.34777 * 120.00056 * 178.03328 * 17 16 6 20 20 C 1.47171 * 120.94012 * 359.97438 * 19 17 16 21 21 C 1.53299 * 108.37055 * 230.46757 * 20 19 17 22 22 O 1.42956 * 109.26591 * 307.77659 * 21 20 19 23 23 C 1.42957 * 114.17160 * 62.55541 * 22 21 20 24 24 C 1.47152 * 120.98147 * 179.97438 * 19 17 16 25 25 H 1.08998 * 109.46744 * 280.58042 * 1 2 3 26 26 H 1.08995 * 109.47454 * 40.58979 * 1 2 3 27 27 H 1.08999 * 109.46425 * 160.58582 * 1 2 3 28 28 H 1.08995 * 109.46548 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47076 * 299.99756 * 3 2 1 30 30 H 1.09002 * 109.47011 * 60.00009 * 3 2 1 31 31 H 1.09001 * 109.46877 * 306.34943 * 4 2 1 32 32 H 1.09000 * 109.46896 * 66.34805 * 4 2 1 33 33 H 1.08995 * 109.47390 * 186.34717 * 4 2 1 34 34 H 1.08998 * 109.47346 * 315.45422 * 5 2 1 35 35 H 1.09000 * 109.46715 * 195.45347 * 5 2 1 36 36 H 1.08997 * 109.47214 * 194.11721 * 7 6 5 37 37 H 1.08996 * 109.47208 * 314.11702 * 7 6 5 38 38 H 0.97005 * 120.00002 * 179.97438 * 11 10 8 39 39 H 1.09005 * 109.46574 * 180.38116 * 16 6 5 40 40 H 1.09003 * 109.47025 * 60.38965 * 16 6 5 41 41 H 1.09000 * 109.64279 * 110.77716 * 20 19 17 42 42 H 1.09000 * 109.72787 * 350.21249 * 20 19 17 43 43 H 1.09003 * 109.51158 * 187.82436 * 21 20 19 44 44 H 1.09007 * 109.51030 * 67.72648 * 21 20 19 45 45 H 1.08999 * 109.51195 * 57.34175 * 23 22 21 46 46 H 1.09000 * 109.51612 * 177.44664 * 23 22 21 47 47 H 1.08997 * 109.68183 * 9.76098 * 24 19 17 48 48 H 1.09003 * 109.68298 * 249.20201 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0402 -0.7212 -1.2492 5 6 2.0401 -0.7212 1.2493 6 7 1.8755 -2.1710 1.0792 7 6 2.9806 -2.7379 0.2948 8 6 4.2234 -2.7934 1.1453 9 1 4.1953 -2.4423 2.1663 10 6 5.3965 -3.2925 0.6201 11 7 5.4306 -3.7206 -0.6230 12 14 6.9372 -3.3607 1.6741 13 1 6.6857 -4.2129 2.8640 14 1 8.0541 -3.9351 0.8816 15 1 7.2965 -1.9890 2.1149 16 6 0.5785 -2.4850 0.4649 17 6 -0.5316 -1.9643 1.3410 18 8 -0.2695 -1.4199 2.3926 19 7 -1.8156 -2.1036 0.9559 20 6 -2.1571 -2.7602 -0.3162 21 6 -3.1191 -1.8490 -1.0872 22 8 -4.2149 -1.4954 -0.2399 23 6 -3.8405 -0.7484 0.9201 24 6 -2.9165 -1.6038 1.7947 25 1 -0.3633 0.1887 1.0102 26 1 -0.3634 0.7803 -0.6686 27 1 -0.3632 -0.9693 -0.3416 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.5870 -1.7108 -1.3079 32 1 1.7726 -0.1459 -2.1355 33 1 3.1242 -0.8206 -1.1943 34 1 1.4707 -0.3902 2.1178 35 1 3.0951 -0.4902 1.3968 36 1 2.7170 -3.7446 -0.0294 37 1 3.1653 -2.1117 -0.5780 38 1 6.2560 -4.0713 -0.9927 39 1 0.4798 -3.5651 0.3567 40 1 0.5180 -2.0145 -0.5166 41 1 -2.6387 -3.7175 -0.1168 42 1 -1.2523 -2.9189 -0.9029 43 1 -3.4931 -2.3748 -1.9658 44 1 -2.5940 -0.9462 -1.3993 45 1 -3.3175 0.1584 0.6160 46 1 -4.7335 -0.4815 1.4852 47 1 -2.5137 -0.9974 2.6059 48 1 -3.4751 -2.4444 2.2065 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071893015.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:32 Heat of formation + Delta-G solvation = -8.616860 kcal Electronic energy + Delta-G solvation = -27216.201528 eV Core-core repulsion = 23695.311566 eV Total energy + Delta-G solvation = -3520.889962 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.13078 -39.15325 -37.46978 -34.73026 -33.89868 -32.38438 -31.70102 -29.41319 -27.73433 -27.51003 -26.52823 -26.17745 -24.43312 -23.60092 -22.15457 -20.55047 -19.12495 -18.54220 -17.28125 -16.63753 -16.35437 -16.01682 -15.64748 -15.37005 -15.14674 -14.82570 -14.55718 -14.21383 -14.03359 -13.68140 -13.36234 -13.01834 -12.69015 -12.61421 -12.24564 -12.00662 -11.97006 -11.60661 -11.37663 -11.26800 -11.23890 -11.06088 -10.92606 -10.84264 -10.75101 -10.51834 -10.39102 -10.27895 -10.02205 -9.83619 -9.77710 -9.33483 -8.98966 -8.51727 -8.35997 -6.93935 -5.98470 -3.97423 2.88189 2.94450 3.36842 3.40165 3.44690 3.58454 4.45324 4.53526 4.64248 4.81091 4.88915 4.96099 5.02958 5.10890 5.22018 5.24032 5.26225 5.29238 5.36958 5.39063 5.53349 5.61987 5.73246 5.76273 5.82734 5.88400 5.89395 5.98706 6.06275 6.11968 6.26199 6.37648 6.40850 6.47257 6.59491 6.72272 6.84238 6.87130 7.02780 7.24040 7.42165 7.46048 7.87594 8.12441 8.26213 8.48323 8.61183 9.09862 9.65297 11.11547 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.022992 B = 0.004381 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.502326 B = 6389.871248 C = 6637.492541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.100 4.100 3 C -0.132 4.132 4 C -0.158 4.158 5 C 0.066 3.934 6 N -0.512 5.512 7 C 0.161 3.839 8 C -0.499 4.499 9 H 0.061 0.939 10 C 0.055 3.945 11 N -0.902 5.902 12 Si 0.895 3.105 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.278 1.278 16 C 0.007 3.993 17 C 0.536 3.464 18 O -0.521 6.521 19 N -0.631 5.631 20 C 0.072 3.928 21 C 0.046 3.954 22 O -0.381 6.381 23 C 0.049 3.951 24 C 0.080 3.920 25 H 0.067 0.933 26 H 0.041 0.959 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.022 0.978 37 H 0.035 0.965 38 H 0.260 0.740 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.103 0.897 47 H 0.100 0.900 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.300 5.986 -2.888 18.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.102 4.102 3 C -0.190 4.190 4 C -0.214 4.214 5 C -0.062 4.062 6 N -0.236 5.236 7 C 0.037 3.963 8 C -0.538 4.538 9 H 0.079 0.921 10 C -0.146 4.146 11 N -0.542 5.542 12 Si 0.724 3.276 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.203 1.203 16 C -0.124 4.124 17 C 0.326 3.674 18 O -0.396 6.396 19 N -0.369 5.369 20 C -0.051 4.051 21 C -0.031 4.031 22 O -0.299 6.299 23 C -0.029 4.029 24 C -0.043 4.043 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.040 0.960 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.114 0.886 43 H 0.123 0.877 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.121 0.879 47 H 0.118 0.882 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.158 5.910 -1.992 18.257 hybrid contribution 1.103 0.197 -0.325 1.167 sum -16.055 6.107 -2.317 17.333 Atomic orbital electron populations 1.23095 0.96269 1.01647 1.02294 1.21230 0.94749 0.96316 0.97925 1.21774 1.01238 0.95383 1.00596 1.22630 1.03261 0.99645 0.95872 1.22408 1.01798 0.86879 0.95160 1.62116 0.99691 1.11600 1.50154 1.20508 0.87274 0.94920 0.93637 1.21137 0.93416 1.40389 0.98814 0.92069 1.24929 0.98841 0.95736 0.95061 1.69934 1.27457 1.43093 1.13750 0.86600 0.82403 0.78333 0.80310 1.20278 1.21485 1.20341 1.23023 0.91146 1.01558 0.96660 1.20722 0.82535 0.77561 0.86568 1.90633 1.82160 1.42486 1.24351 1.48288 1.05874 1.61066 1.21693 1.22408 1.00475 0.96612 0.85631 1.22999 0.88489 0.98537 0.93086 1.87941 1.32178 1.74246 1.35577 1.22990 0.99278 0.93656 0.86975 1.22162 0.88338 0.99121 0.94703 0.91393 0.93947 0.90915 0.92413 0.93592 0.93136 0.91548 0.94255 0.89820 0.90220 0.90414 0.96031 0.94780 0.93032 0.89574 0.89641 0.90470 0.88590 0.87688 0.92466 0.92649 0.87927 0.88190 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 6.66 37.16 0.25 -2.33 16 2 C -0.10 -1.66 0.77 -154.50 -0.12 -1.78 16 3 C -0.13 -1.97 8.33 37.16 0.31 -1.67 16 4 C -0.16 -2.70 6.55 37.16 0.24 -2.46 16 5 C 0.07 1.33 4.47 -3.82 -0.02 1.31 16 6 N -0.51 -11.08 4.48 -237.52 -1.06 -12.14 16 7 C 0.16 3.99 4.01 -4.98 -0.02 3.97 16 8 C -0.50 -13.92 8.42 -34.44 -0.29 -14.21 16 9 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 10 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 11 N -0.90 -26.12 13.29 55.43 0.74 -25.39 16 12 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 C 0.01 0.12 2.94 -4.97 -0.01 0.10 16 17 C 0.54 8.78 4.16 -10.99 -0.05 8.73 16 18 O -0.52 -10.25 12.32 5.56 0.07 -10.18 16 19 N -0.63 -7.99 2.63 -172.25 -0.45 -8.44 16 20 C 0.07 0.71 5.88 -3.52 -0.02 0.69 16 21 C 0.05 0.41 6.98 37.31 0.26 0.67 16 22 O -0.38 -3.94 10.74 -35.23 -0.38 -4.32 16 23 C 0.05 0.45 6.99 37.32 0.26 0.71 16 24 C 0.08 0.88 6.64 -3.52 -0.02 0.86 16 25 H 0.07 1.09 5.63 -51.93 -0.29 0.80 16 26 H 0.04 0.55 7.98 -51.93 -0.41 0.14 16 27 H 0.07 1.01 2.45 -51.93 -0.13 0.88 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.04 0.61 8.13 -51.93 -0.42 0.19 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.15 3.99 -51.93 -0.21 0.94 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.70 6.28 -51.93 -0.33 1.37 16 34 H 0.08 1.68 5.77 -51.93 -0.30 1.38 16 35 H 0.08 1.73 7.10 -51.93 -0.37 1.36 16 36 H 0.02 0.58 7.86 -51.93 -0.41 0.17 16 37 H 0.03 0.85 3.43 -51.93 -0.18 0.67 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.09 1.47 7.94 -51.93 -0.41 1.05 16 40 H 0.09 1.36 1.98 -51.93 -0.10 1.25 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.90 5.92 -51.93 -0.31 0.60 16 43 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.10 1.22 7.08 -51.93 -0.37 0.85 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 343.52 15.07 5.18 5.18 Total: -1.00 -31.65 343.52 -7.85 -39.49 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.58 Total: 2.99 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 0.67 Total: -3.97 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: -0.78 Total: -45.97 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.31 Total: -14.50 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.65 -7.85 -39.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071893015.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.876 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds