Wall clock time and date at job start Tue Mar 31 2020 04:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47169 * 2 1 4 4 O 1.42903 * 109.47490 * 120.00506 * 2 1 3 5 5 C 1.52998 * 109.47142 * 240.00402 * 2 1 3 6 6 H 1.09000 * 109.46399 * 57.88568 * 5 2 1 7 7 C 1.53043 * 109.46252 * 297.90743 * 5 2 1 8 8 C 1.53117 * 109.27717 * 180.80651 * 7 5 2 9 9 C 1.53118 * 109.21750 * 57.61910 * 8 7 5 10 10 C 1.53039 * 109.27702 * 302.44294 * 9 8 7 11 11 N 1.46845 * 109.46407 * 177.85344 * 5 2 1 12 12 C 1.46897 * 111.00135 * 305.85384 * 11 5 2 13 13 C 1.53000 * 109.47435 * 171.97109 * 12 11 5 14 14 C 1.50699 * 109.47202 * 180.02562 * 13 12 11 15 15 O 1.21278 * 119.99862 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99712 * 180.02562 * 14 13 12 17 17 C 1.46503 * 120.00238 * 359.97438 * 16 14 13 18 18 C 1.46503 * 119.99718 * 180.02562 * 16 14 13 19 19 C 1.50697 * 109.46913 * 89.99728 * 18 16 14 20 20 H 1.07998 * 120.00271 * 0.02562 * 19 18 16 21 21 C 1.37880 * 119.99789 * 179.97438 * 19 18 16 22 22 N 1.31519 * 120.00346 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 120.00106 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46885 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46960 * 120.00289 * 23 21 19 26 26 H 1.48496 * 109.47082 * 240.00394 * 23 21 19 27 27 H 1.09001 * 109.46717 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46950 * 299.99408 * 1 2 3 29 29 H 1.09001 * 109.47028 * 59.99798 * 1 2 3 30 30 H 0.96695 * 114.00288 * 180.02562 * 4 2 1 31 31 H 1.08990 * 109.50068 * 60.86440 * 7 5 2 32 32 H 1.09003 * 109.50085 * 300.74288 * 7 5 2 33 33 H 1.09004 * 109.52289 * 177.56058 * 8 7 5 34 34 H 1.09006 * 109.52205 * 297.68256 * 8 7 5 35 35 H 1.09003 * 109.50150 * 62.31721 * 9 8 7 36 36 H 1.08996 * 109.50631 * 182.43222 * 9 8 7 37 37 H 1.09002 * 109.41176 * 299.06776 * 10 9 8 38 38 H 1.08996 * 109.45784 * 179.12017 * 10 9 8 39 39 H 1.08998 * 109.47444 * 291.97794 * 12 11 5 40 40 H 1.09009 * 109.47096 * 51.97614 * 12 11 5 41 41 H 1.08998 * 109.47364 * 300.00734 * 13 12 11 42 42 H 1.09004 * 109.46992 * 59.99987 * 13 12 11 43 43 H 1.08998 * 109.47161 * 90.00174 * 17 16 14 44 44 H 1.08997 * 109.46722 * 209.99986 * 17 16 14 45 45 H 1.08996 * 109.46772 * 330.00370 * 17 16 14 46 46 H 1.09003 * 109.46945 * 210.00035 * 18 16 14 47 47 H 1.08999 * 109.46997 * 329.99857 * 18 16 14 48 48 H 0.96991 * 120.00059 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0400 -0.7212 -1.2493 6 1 1.6460 -0.2295 -2.1387 7 6 1.5732 -2.1784 -1.2231 8 6 2.1027 -2.9012 -2.4648 9 6 3.6301 -2.7981 -2.4950 10 6 4.0373 -1.3229 -2.4827 11 7 3.5075 -0.6763 -1.2753 12 6 3.9941 0.7050 -1.1614 13 6 5.5146 0.6978 -0.9909 14 6 6.0136 2.1149 -0.8734 15 8 5.2303 3.0395 -0.9208 16 7 7.3305 2.3546 -0.7155 17 6 8.2767 1.2376 -0.6576 18 6 7.8156 3.7322 -0.6007 19 6 7.8241 4.1426 0.8493 20 1 7.5009 3.4467 1.6093 21 6 8.2455 5.4061 1.2057 22 7 8.6396 6.2534 0.2802 23 14 8.2567 5.9146 3.0032 24 1 7.7710 4.7876 3.8394 25 1 9.6403 6.2706 3.4082 26 1 7.3682 7.0895 3.1908 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 2.9703 -0.7116 1.2330 31 1 0.4838 -2.2115 -1.2196 32 1 1.9557 -2.6670 -0.3269 33 1 1.8090 -3.9503 -2.4286 34 1 1.6885 -2.4378 -3.3603 35 1 4.0458 -3.2967 -1.6194 36 1 4.0091 -3.2738 -3.3995 37 1 3.6337 -0.8284 -3.3663 38 1 5.1245 -1.2463 -2.4884 39 1 3.7323 1.2581 -2.0634 40 1 3.5338 1.1822 -0.2961 41 1 5.7764 0.1447 -0.0889 42 1 5.9749 0.2206 -1.8560 43 1 8.6257 1.0045 -1.6636 44 1 9.1264 1.5133 -0.0331 45 1 7.7819 0.3641 -0.2332 46 1 8.8270 3.7959 -1.0024 47 1 7.1591 4.3966 -1.1625 48 1 8.9356 7.1423 0.5310 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092796385.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:13 Heat of formation + Delta-G solvation = -116.740525 kcal Electronic energy + Delta-G solvation = -25540.632107 eV Core-core repulsion = 22015.053551 eV Total energy + Delta-G solvation = -3525.578556 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.12745 -40.31753 -37.45254 -36.63033 -35.26865 -34.69480 -33.10469 -31.52466 -30.09177 -29.54072 -27.32685 -26.15454 -25.18147 -24.57998 -22.57526 -21.73431 -20.56012 -19.89488 -18.71548 -18.28044 -17.87583 -17.17876 -16.84927 -16.65163 -16.32998 -15.96559 -15.60625 -15.36339 -14.80847 -14.65074 -14.48187 -14.26266 -13.95702 -13.75639 -13.57784 -13.52531 -13.43520 -13.27653 -13.16893 -12.84834 -12.78208 -12.71909 -12.46428 -12.42619 -12.21806 -12.03609 -11.82020 -11.70234 -11.67945 -11.47842 -11.07185 -10.66205 -10.61687 -10.49934 -9.42014 -9.37471 -8.23726 -6.38713 1.35683 1.38061 1.50039 1.84108 2.26878 2.40594 2.86256 3.05800 3.40436 3.64464 3.77266 3.90230 3.92852 4.04242 4.17108 4.19064 4.29301 4.34047 4.41629 4.43375 4.52503 4.61893 4.67601 4.72338 4.79117 4.82815 4.87091 4.94235 4.96676 4.97826 5.04853 5.05796 5.12032 5.13343 5.22265 5.24585 5.31287 5.34477 5.54354 5.55751 5.83661 6.01062 6.05103 6.10953 6.69118 6.79633 6.83232 7.27420 7.48590 8.83511 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.019957 B = 0.003463 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.703248 B = 8083.380571 C = 8931.488802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.100 3.900 3 H 0.039 0.961 4 O -0.569 6.569 5 C 0.057 3.943 6 H 0.041 0.959 7 C -0.100 4.100 8 C -0.121 4.121 9 C -0.111 4.111 10 C 0.047 3.953 11 N -0.528 5.528 12 C 0.072 3.928 13 C -0.114 4.114 14 C 0.493 3.507 15 O -0.602 6.602 16 N -0.611 5.611 17 C 0.078 3.922 18 C 0.258 3.742 19 C -0.542 4.542 20 H 0.054 0.946 21 C 0.006 3.994 22 N -0.929 5.929 23 Si 0.968 3.032 24 H -0.266 1.266 25 H -0.268 1.268 26 H -0.282 1.282 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.387 0.613 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.026 0.974 38 H 0.088 0.912 39 H 0.021 0.979 40 H 0.068 0.932 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.097 0.903 46 H 0.023 0.977 47 H -0.004 1.004 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.821 -22.227 -5.231 25.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.041 3.959 3 H 0.057 0.943 4 O -0.377 6.377 5 C -0.052 4.052 6 H 0.059 0.941 7 C -0.138 4.138 8 C -0.159 4.159 9 C -0.149 4.149 10 C -0.081 4.081 11 N -0.253 5.253 12 C -0.056 4.056 13 C -0.154 4.154 14 C 0.282 3.718 15 O -0.484 6.484 16 N -0.342 5.342 17 C -0.064 4.064 18 C 0.137 3.863 19 C -0.581 4.581 20 H 0.072 0.928 21 C -0.193 4.193 22 N -0.569 5.569 23 Si 0.792 3.208 24 H -0.190 1.190 25 H -0.193 1.193 26 H -0.208 1.208 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.235 0.765 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.044 0.956 38 H 0.106 0.894 39 H 0.039 0.961 40 H 0.086 0.914 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.115 0.885 46 H 0.041 0.959 47 H 0.014 0.986 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.581 -21.922 -4.782 25.251 hybrid contribution 0.566 1.771 -0.142 1.864 sum -11.016 -20.152 -4.924 23.488 Atomic orbital electron populations 1.21814 0.92221 1.03514 1.02725 1.21923 0.95684 0.93780 0.84539 0.94340 1.86379 1.28014 1.79804 1.43462 1.22335 0.87355 0.98320 0.97179 0.94107 1.21515 1.00436 0.92695 0.99124 1.21615 0.95863 1.00990 0.97424 1.21566 0.95905 0.94469 1.02923 1.22287 1.00771 0.95485 0.89513 1.61943 1.08279 1.15293 1.39765 1.21743 0.94170 0.89045 1.00691 1.21572 0.96153 0.91442 1.06254 1.21404 0.81932 0.92513 0.75932 1.90635 1.56012 1.48582 1.53216 1.48202 1.07202 1.08698 1.70108 1.21947 0.93373 0.88558 1.02512 1.18743 0.93249 0.78615 0.95740 1.21747 1.43680 0.99241 0.93388 0.92793 1.25883 0.94591 0.96206 1.02596 1.70058 1.44731 1.07189 1.34951 0.85357 0.78182 0.78151 0.79063 1.19045 1.19323 1.20802 0.90673 0.92275 0.90282 0.76457 0.90739 0.91154 0.90543 0.92502 0.90969 0.90145 0.95590 0.89396 0.96061 0.91362 0.86287 0.86710 0.91120 0.91717 0.88501 0.95922 0.98625 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.26 71.98 0.67 -2.02 16 2 C 0.10 2.23 2.90 30.59 0.09 2.32 16 3 H 0.04 1.03 6.03 -2.39 -0.01 1.02 16 4 O -0.57 -13.62 12.55 -148.98 -1.87 -15.49 16 5 C 0.06 1.12 1.73 44.94 0.08 1.20 16 6 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 7 C -0.10 -1.60 4.89 30.65 0.15 -1.45 16 8 C -0.12 -1.61 6.00 30.67 0.18 -1.42 16 9 C -0.11 -1.47 6.10 30.65 0.19 -1.28 16 10 C 0.05 0.79 5.27 86.33 0.46 1.25 16 11 N -0.53 -10.68 4.00 -871.09 -3.49 -14.17 16 12 C 0.07 1.93 3.93 86.30 0.34 2.26 16 13 C -0.11 -3.02 4.13 29.85 0.12 -2.90 16 14 C 0.49 20.22 7.67 87.66 0.67 20.90 16 15 O -0.60 -31.33 15.56 -3.02 -0.05 -31.37 16 16 N -0.61 -25.79 2.86 -851.13 -2.43 -28.22 16 17 C 0.08 2.25 10.24 127.77 1.31 3.56 16 18 C 0.26 14.11 5.16 85.63 0.44 14.55 16 19 C -0.54 -31.63 9.39 25.60 0.24 -31.38 16 20 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 21 C 0.01 0.35 5.46 84.65 0.46 0.81 16 22 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 23 Si 0.97 45.38 29.54 68.60 2.03 47.40 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 27 H 0.07 1.23 6.50 -2.39 -0.02 1.21 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.39 8.29 8.60 -74.06 -0.64 7.66 16 31 H 0.07 1.08 6.52 -2.39 -0.02 1.06 16 32 H 0.07 1.27 7.61 -2.39 -0.02 1.26 16 33 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.09 1.35 6.13 -2.39 -0.01 1.33 16 39 H 0.02 0.65 8.10 -2.39 -0.02 0.63 16 40 H 0.07 2.11 5.67 -2.38 -0.01 2.09 16 41 H 0.12 2.65 7.40 -2.39 -0.02 2.64 16 42 H 0.11 2.38 6.34 -2.38 -0.02 2.37 16 43 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 45 H 0.10 2.05 6.44 -2.39 -0.02 2.04 16 46 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 47 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 48 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -74.67 369.55 0.17 -74.50 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.30 Total: 17.52 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 5.40 Total: 6.40 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -5.63 Total: -98.95 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -1.92 Total: -46.87 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -74.67 0.17 -74.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092796385.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.245 kcal (2) G-P(sol) polarization free energy of solvation -74.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds