Wall clock time and date at job start Tue Mar 31 2020 04:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 O 1.42904 * 109.46946 * 119.99625 * 2 1 3 5 5 C 1.52997 * 109.47325 * 239.99963 * 2 1 3 6 6 H 1.09000 * 109.45136 * 174.50044 * 5 2 1 7 7 C 1.53033 * 109.46079 * 294.46884 * 5 2 1 8 8 C 1.53124 * 109.27613 * 179.19510 * 7 5 2 9 9 C 1.53121 * 109.16158 * 302.34837 * 8 7 5 10 10 C 1.53031 * 109.27758 * 57.65611 * 9 8 7 11 11 N 1.46847 * 109.46194 * 54.52678 * 5 2 1 12 12 C 1.46899 * 111.00079 * 54.14411 * 11 5 2 13 13 C 1.53001 * 109.47016 * 193.95820 * 12 11 5 14 14 C 1.50696 * 109.47430 * 180.02562 * 13 12 11 15 15 O 1.21285 * 119.99365 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00287 * 180.02562 * 14 13 12 17 17 C 1.46496 * 119.99890 * 0.02562 * 16 14 13 18 18 C 1.46498 * 119.99805 * 179.97438 * 16 14 13 19 19 C 1.50702 * 109.46873 * 90.00365 * 18 16 14 20 20 H 1.08003 * 119.99950 * 359.97438 * 19 18 16 21 21 C 1.37878 * 119.99823 * 179.97438 * 19 18 16 22 22 N 1.31516 * 120.00134 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99917 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46852 * 60.00117 * 23 21 19 25 25 H 1.48501 * 109.47117 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47182 * 300.00187 * 23 21 19 27 27 H 1.09000 * 109.46983 * 185.78570 * 1 2 3 28 28 H 1.08994 * 109.47652 * 305.79282 * 1 2 3 29 29 H 1.08999 * 109.47082 * 65.79017 * 1 2 3 30 30 H 0.96700 * 113.99536 * 180.02562 * 4 2 1 31 31 H 1.08996 * 109.50641 * 299.13640 * 7 5 2 32 32 H 1.09004 * 109.50478 * 59.26083 * 7 5 2 33 33 H 1.09000 * 109.52435 * 62.25696 * 8 7 5 34 34 H 1.09002 * 109.51918 * 182.44167 * 8 7 5 35 35 H 1.09004 * 109.49848 * 297.71132 * 9 8 7 36 36 H 1.08994 * 109.53472 * 177.61852 * 9 8 7 37 37 H 1.08996 * 109.46101 * 180.80845 * 10 9 8 38 38 H 1.08994 * 109.46622 * 60.83391 * 10 9 8 39 39 H 1.08993 * 109.47176 * 313.96041 * 12 11 5 40 40 H 1.08999 * 109.46900 * 73.96147 * 12 11 5 41 41 H 1.08998 * 109.47525 * 300.00846 * 13 12 11 42 42 H 1.09002 * 109.46745 * 59.99966 * 13 12 11 43 43 H 1.09000 * 109.47304 * 89.99525 * 17 16 14 44 44 H 1.09001 * 109.47177 * 209.99872 * 17 16 14 45 45 H 1.09008 * 109.47259 * 329.99844 * 17 16 14 46 46 H 1.08997 * 109.46868 * 209.99976 * 18 16 14 47 47 H 1.08995 * 109.47710 * 329.99973 * 18 16 14 48 48 H 0.96995 * 119.99886 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0400 -0.7212 -1.2492 6 1 3.1255 -0.6365 -1.2995 7 6 1.6465 -2.1986 -1.1814 8 6 2.1414 -2.9119 -2.4427 9 6 1.5461 -2.2251 -3.6749 10 6 1.9425 -0.7470 -3.6704 11 7 1.4456 -0.1093 -2.4444 12 6 1.6870 1.3395 -2.4695 13 6 0.7789 1.9897 -3.5153 14 6 1.0269 3.4759 -3.5416 15 8 1.8488 3.9667 -2.7968 16 7 0.3348 4.2598 -4.3919 17 6 -0.6590 3.6670 -5.2903 18 6 0.5756 5.7046 -4.4170 19 6 1.6626 6.0155 -5.4134 20 1 2.1279 5.2166 -5.9717 21 6 2.0632 7.3197 -5.6121 22 7 1.4970 8.2924 -4.9318 23 14 3.4111 7.7050 -6.8467 24 1 2.9913 7.2490 -8.1961 25 1 3.6542 9.1697 -6.8731 26 1 4.6587 7.0025 -6.4526 27 1 -0.3633 -1.0224 0.1036 28 1 -0.3634 0.6010 0.8335 29 1 -0.3633 0.4214 -0.9373 30 1 2.9703 -0.7114 1.2331 31 1 2.1007 -2.6562 -0.3025 32 1 0.5617 -2.2837 -1.1172 33 1 3.2293 -2.8607 -2.4870 34 1 1.8257 -3.9549 -2.4188 35 1 0.4597 -2.3106 -3.6498 36 1 1.9278 -2.7015 -4.5778 37 1 1.5083 -0.2519 -4.5389 38 1 3.0285 -0.6621 -3.7093 39 1 1.4706 1.7609 -1.4880 40 1 2.7294 1.5297 -2.7249 41 1 0.9952 1.5682 -4.4969 42 1 -0.2635 1.7994 -3.2599 43 1 -1.6316 3.6542 -4.7984 44 1 -0.7216 4.2585 -6.2037 45 1 -0.3633 2.6473 -5.5372 46 1 -0.3401 6.2206 -4.7055 47 1 0.8842 6.0389 -3.4265 48 1 1.7785 9.2100 -5.0719 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092796387.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:25 Heat of formation + Delta-G solvation = -91.754367 kcal Electronic energy + Delta-G solvation = -25536.329629 eV Core-core repulsion = 22011.834554 eV Total energy + Delta-G solvation = -3524.495075 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.10997 -38.82549 -36.82641 -34.89401 -34.23766 -32.63594 -32.18300 -30.24069 -29.14789 -27.72280 -25.87583 -24.93400 -24.30072 -22.99914 -21.49954 -21.00933 -19.55164 -18.31467 -17.37177 -16.71935 -16.51247 -15.71975 -15.65807 -15.26645 -15.07736 -14.77353 -14.41311 -14.16786 -14.00975 -13.60304 -13.16385 -13.09535 -12.78206 -12.32118 -12.29873 -12.16867 -12.08486 -12.03890 -11.85057 -11.76364 -11.63564 -11.17185 -11.10685 -11.02578 -10.92424 -10.87287 -10.58039 -10.56246 -10.35900 -10.16238 -9.71112 -9.64399 -8.88798 -8.43713 -8.41172 -7.63059 -6.04514 -4.09449 3.30824 3.35284 3.36965 3.46702 3.54482 4.08326 4.20775 4.43986 4.49685 4.65020 4.70665 4.83375 4.97205 5.06899 5.17871 5.23116 5.26453 5.30393 5.35076 5.38239 5.49270 5.55809 5.56982 5.64738 5.73880 5.76567 5.82361 5.87325 5.92511 5.94597 5.98462 6.04760 6.08087 6.10461 6.20642 6.22838 6.34335 6.97905 6.98760 7.07527 7.44853 7.47112 7.54918 7.91848 8.23555 8.43579 8.89886 9.10779 9.55592 11.03532 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.021127 B = 0.003281 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.980021 B = 8531.627705 C = 8875.743609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.101 3.899 3 H 0.060 0.940 4 O -0.564 6.564 5 C 0.057 3.943 6 H 0.039 0.961 7 C -0.105 4.105 8 C -0.122 4.122 9 C -0.116 4.116 10 C 0.052 3.948 11 N -0.527 5.527 12 C 0.062 3.938 13 C -0.133 4.133 14 C 0.504 3.496 15 O -0.546 6.546 16 N -0.603 5.603 17 C 0.084 3.916 18 C 0.245 3.755 19 C -0.527 4.527 20 H 0.056 0.944 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.898 3.102 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.277 1.277 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.085 0.915 30 H 0.374 0.626 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.032 0.968 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.044 0.956 44 H 0.072 0.928 45 H 0.057 0.943 46 H 0.031 0.969 47 H 0.043 0.957 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.373 -22.100 4.677 22.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.043 3.957 3 H 0.078 0.922 4 O -0.369 6.369 5 C -0.052 4.052 6 H 0.057 0.943 7 C -0.143 4.143 8 C -0.160 4.160 9 C -0.154 4.154 10 C -0.076 4.076 11 N -0.254 5.254 12 C -0.065 4.065 13 C -0.173 4.173 14 C 0.290 3.710 15 O -0.425 6.425 16 N -0.335 5.335 17 C -0.060 4.060 18 C 0.126 3.874 19 C -0.566 4.566 20 H 0.074 0.926 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.202 1.202 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.220 0.780 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.050 0.950 39 H 0.105 0.895 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.076 0.924 46 H 0.049 0.951 47 H 0.061 0.939 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.099 -21.747 5.230 22.581 hybrid contribution 2.239 0.556 -1.110 2.561 sum -0.860 -21.191 4.120 21.605 Atomic orbital electron populations 1.21719 0.92466 1.02488 1.02799 1.21943 0.96354 0.94218 0.83224 0.92187 1.86542 1.26425 1.80305 1.43613 1.22273 0.96377 0.95498 0.91065 0.94305 1.21552 1.02238 0.93137 0.97387 1.21606 1.00085 0.99166 0.95147 1.21583 1.01676 0.94465 0.97653 1.22151 0.97647 0.94903 0.92888 1.61917 1.58647 1.03315 1.01481 1.21953 0.98236 0.85894 1.00425 1.21620 1.01922 0.93301 1.00491 1.20319 0.81524 0.88239 0.80929 1.90663 1.34287 1.75841 1.41684 1.48156 1.38226 1.10506 1.36623 1.21631 0.91350 0.98222 0.94794 1.19270 0.96478 0.73062 0.98603 1.21399 1.20128 0.92580 1.22467 0.92601 1.24939 0.96713 0.96119 0.96347 1.69921 1.42380 0.99997 1.41097 0.86561 0.82345 0.77160 0.81363 1.20249 1.21137 1.20226 0.92111 0.92812 0.89625 0.77962 0.91249 0.90796 0.92559 0.91930 0.91023 0.91747 0.90259 0.94952 0.89487 0.93856 0.89677 0.88896 0.93718 0.90893 0.92441 0.95059 0.93877 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.88 37.16 0.33 -1.16 16 2 C 0.10 1.10 2.86 -26.73 -0.08 1.02 16 3 H 0.06 0.72 6.36 -51.93 -0.33 0.39 16 4 O -0.56 -5.82 12.44 -35.23 -0.44 -6.26 16 5 C 0.06 0.58 1.89 -67.73 -0.13 0.45 16 6 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 7 C -0.11 -0.95 4.94 -26.65 -0.13 -1.08 16 8 C -0.12 -0.99 6.00 -26.60 -0.16 -1.15 16 9 C -0.12 -0.98 6.09 -26.65 -0.16 -1.14 16 10 C 0.05 0.53 5.30 -3.83 -0.02 0.51 16 11 N -0.53 -5.83 3.49 -226.70 -0.79 -6.62 16 12 C 0.06 0.86 3.58 -3.82 -0.01 0.85 16 13 C -0.13 -1.91 4.26 -27.88 -0.12 -2.03 16 14 C 0.50 10.32 7.67 -10.99 -0.08 10.24 16 15 O -0.55 -13.61 15.56 5.55 0.09 -13.52 16 16 N -0.60 -12.77 2.86 -182.96 -0.52 -13.30 16 17 C 0.08 1.32 10.24 59.84 0.61 1.93 16 18 C 0.25 6.47 5.16 -5.19 -0.03 6.44 16 19 C -0.53 -15.05 9.39 -34.44 -0.32 -15.38 16 20 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 23 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 H 0.06 0.63 6.85 -51.93 -0.36 0.28 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.96 6.81 -51.93 -0.35 0.60 16 30 H 0.37 2.51 9.08 45.56 0.41 2.92 16 31 H 0.07 0.60 7.58 -51.93 -0.39 0.21 16 32 H 0.07 0.71 6.68 -51.93 -0.35 0.36 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.80 6.39 -51.93 -0.33 0.47 16 38 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 1.27 5.34 -51.93 -0.28 1.00 16 40 H 0.04 0.68 8.04 -51.93 -0.42 0.26 16 41 H 0.08 1.11 5.83 -51.93 -0.30 0.80 16 42 H 0.09 1.18 8.11 -51.93 -0.42 0.76 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 45 H 0.06 0.73 6.44 -51.92 -0.33 0.40 16 46 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 47 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 48 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -33.30 368.55 -8.40 -41.70 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.60 Total: 0.42 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -0.40 Total: 1.15 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.58 Total: -45.95 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.35 Total: -19.78 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.30 -8.40 -41.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092796387.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.053 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds