Wall clock time and date at job start Tue Mar 31 2020 04:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47093 * 2 1 4 4 O 1.42898 * 109.47195 * 120.00774 * 2 1 3 5 5 C 1.53004 * 109.46775 * 240.00333 * 2 1 3 6 6 H 1.08997 * 109.50667 * 300.07710 * 5 2 1 7 7 C 1.53115 * 109.50460 * 60.20047 * 5 2 1 8 8 C 1.53116 * 109.16421 * 177.59165 * 7 5 2 9 9 C 1.53038 * 109.28002 * 302.34749 * 8 7 5 10 10 N 1.46846 * 109.52665 * 59.17159 * 9 8 7 11 11 C 1.46894 * 111.00186 * 174.16111 * 10 9 8 12 12 C 1.52997 * 109.47515 * 294.21459 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.46490 * 120.00111 * 0.02562 * 15 13 12 17 17 C 1.46497 * 119.99566 * 180.02562 * 15 13 12 18 18 C 1.50707 * 109.47162 * 90.00410 * 17 15 13 19 19 H 1.07998 * 119.99576 * 359.97438 * 18 17 15 20 20 C 1.37873 * 120.00057 * 179.97438 * 18 17 15 21 21 N 1.31510 * 120.00061 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00225 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46861 * 89.99972 * 22 20 18 24 24 H 1.48498 * 109.47453 * 210.00313 * 22 20 18 25 25 H 1.48505 * 109.46941 * 330.00240 * 22 20 18 26 26 C 1.46847 * 111.19775 * 298.26502 * 10 9 8 27 27 H 1.09003 * 109.47437 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47204 * 299.99425 * 1 2 3 29 29 H 1.09005 * 109.47416 * 59.99563 * 1 2 3 30 30 H 0.96694 * 114.00510 * 59.99576 * 4 2 1 31 31 H 1.09005 * 109.52267 * 297.49685 * 7 5 2 32 32 H 1.08997 * 109.52427 * 57.68757 * 7 5 2 33 33 H 1.09001 * 109.50384 * 62.28088 * 8 7 5 34 34 H 1.08997 * 109.50985 * 182.36373 * 8 7 5 35 35 H 1.09004 * 109.46225 * 299.16191 * 9 8 7 36 36 H 1.08997 * 109.46625 * 179.19631 * 9 8 7 37 37 H 1.09002 * 109.47104 * 174.21192 * 11 10 9 38 38 H 1.08998 * 109.46828 * 54.22024 * 11 10 9 39 39 H 1.09002 * 109.47153 * 59.99762 * 12 11 10 40 40 H 1.09001 * 109.46832 * 299.99953 * 12 11 10 41 41 H 1.08995 * 109.47620 * 89.99771 * 16 15 13 42 42 H 1.09006 * 109.47028 * 209.99878 * 16 15 13 43 43 H 1.09002 * 109.47109 * 329.99455 * 16 15 13 44 44 H 1.09000 * 109.47018 * 209.99971 * 17 15 13 45 45 H 1.09000 * 109.47828 * 330.00266 * 17 15 13 46 46 H 0.96997 * 120.00410 * 179.97438 * 21 20 18 47 47 H 1.09003 * 109.45950 * 181.75625 * 26 10 9 48 48 H 1.08994 * 109.46440 * 301.73094 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.0399 -0.7212 -1.2493 6 1 1.6757 -1.7485 -1.2507 7 6 1.5340 0.0030 -2.5000 8 6 2.0977 -0.6890 -3.7441 9 6 3.6264 -0.6905 -3.6725 10 7 4.0603 -1.3952 -2.4595 11 6 5.5220 -1.5371 -2.4275 12 6 5.9706 -2.4535 -3.5676 13 6 7.4702 -2.5986 -3.5351 14 8 8.1165 -2.0258 -2.6836 15 7 8.0930 -3.3657 -4.4518 16 6 7.3123 -4.0580 -5.4800 17 6 9.5508 -3.5072 -4.4198 18 6 9.9226 -4.6826 -3.5530 19 1 9.1502 -5.2656 -3.0735 20 6 11.2487 -5.0136 -3.3721 21 7 11.5731 -6.0396 -2.6160 22 14 12.5847 -4.0056 -4.2020 23 1 12.9966 -2.8959 -3.3051 24 1 13.7557 -4.8736 -4.4856 25 1 12.0636 -3.4458 -5.4750 26 6 3.5703 -0.7216 -1.2501 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.7210 -1.5953 1.2328 31 1 0.4448 -0.0321 -2.5257 32 1 1.8656 1.0411 -2.4789 33 1 1.7344 -1.7159 -3.7854 34 1 1.7751 -0.1528 -4.6365 35 1 3.9897 0.3369 -3.6452 36 1 4.0306 -1.1952 -4.5500 37 1 5.8243 -1.9694 -1.4736 38 1 5.9848 -0.5573 -2.5453 39 1 5.6683 -2.0213 -4.5215 40 1 5.5077 -3.4333 -3.4497 41 1 7.2112 -3.4147 -6.3541 42 1 7.8211 -4.9793 -5.7637 43 1 6.3236 -4.2952 -5.0871 44 1 9.9223 -3.6700 -5.4315 45 1 9.9952 -2.5995 -4.0113 46 1 12.5061 -6.2727 -2.4890 47 1 3.9338 -1.2490 -0.3682 48 1 3.9336 0.3059 -1.2342 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092806363.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:37 Heat of formation + Delta-G solvation = -122.098522 kcal Electronic energy + Delta-G solvation = -24849.293533 eV Core-core repulsion = 21323.482637 eV Total energy + Delta-G solvation = -3525.810896 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.96247 -40.30086 -38.12784 -36.67009 -35.22879 -34.68881 -32.50750 -31.99861 -30.42481 -29.56029 -27.37158 -26.19256 -24.84155 -23.98204 -23.15034 -21.77186 -20.78561 -19.90685 -19.16141 -18.13589 -17.41964 -17.14422 -16.86172 -16.64068 -16.34073 -16.03460 -15.58325 -15.33651 -15.12769 -14.83698 -14.56082 -14.44149 -14.11107 -13.90377 -13.67834 -13.64655 -13.42211 -13.27768 -13.19777 -12.88571 -12.69505 -12.62678 -12.46962 -12.35792 -12.12742 -12.01209 -11.78674 -11.75774 -11.58153 -11.52300 -11.12448 -10.84746 -10.69450 -10.63315 -9.40345 -9.34866 -8.35296 -6.40579 1.31330 1.35823 1.44261 1.78221 2.25982 2.30002 2.88756 2.99085 3.48989 3.70061 3.84017 3.85398 3.87646 4.05829 4.08229 4.20914 4.29964 4.38091 4.40333 4.44439 4.52610 4.57366 4.66824 4.68091 4.75757 4.79553 4.81288 4.91243 4.92814 4.95109 4.97541 5.01066 5.02723 5.04386 5.11896 5.22207 5.30113 5.41019 5.44756 5.52196 5.61337 6.02068 6.15224 6.22679 6.60732 6.69087 6.87254 7.20043 7.40983 8.81855 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.027132 B = 0.002753 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.728022 B =10168.245533 C =10724.527035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.106 3.894 3 H 0.086 0.914 4 O -0.584 6.584 5 C -0.104 4.104 6 H 0.084 0.916 7 C -0.114 4.114 8 C -0.110 4.110 9 C 0.043 3.957 10 N -0.536 5.536 11 C 0.080 3.920 12 C -0.114 4.114 13 C 0.495 3.505 14 O -0.600 6.600 15 N -0.608 5.608 16 C 0.077 3.923 17 C 0.222 3.778 18 C -0.537 4.537 19 H 0.027 0.973 20 C 0.009 3.991 21 N -0.946 5.946 22 Si 0.950 3.050 23 H -0.278 1.278 24 H -0.273 1.273 25 H -0.237 1.237 26 C 0.064 3.936 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.387 0.613 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.025 0.975 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.024 0.976 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.091 0.909 44 H 0.052 0.948 45 H 0.017 0.983 46 H 0.269 0.731 47 H 0.063 0.937 48 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.322 12.401 -5.205 29.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.047 3.953 3 H 0.104 0.896 4 O -0.392 6.392 5 C -0.123 4.123 6 H 0.102 0.898 7 C -0.152 4.152 8 C -0.148 4.148 9 C -0.085 4.085 10 N -0.261 5.261 11 C -0.048 4.048 12 C -0.153 4.153 13 C 0.284 3.716 14 O -0.482 6.482 15 N -0.339 5.339 16 C -0.065 4.065 17 C 0.099 3.901 18 C -0.575 4.575 19 H 0.045 0.955 20 C -0.189 4.189 21 N -0.586 5.586 22 Si 0.772 3.228 23 H -0.203 1.203 24 H -0.199 1.199 25 H -0.160 1.160 26 C -0.063 4.063 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.237 0.763 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.044 0.956 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.042 0.958 39 H 0.138 0.862 40 H 0.130 0.870 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.109 0.891 44 H 0.070 0.930 45 H 0.035 0.965 46 H 0.078 0.922 47 H 0.082 0.918 48 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -25.782 12.683 -4.648 29.107 hybrid contribution 1.452 0.160 0.280 1.487 sum -24.331 12.843 -4.368 27.857 Atomic orbital electron populations 1.22468 0.94610 1.03322 1.03156 1.21950 0.94067 0.95892 0.83388 0.89608 1.86563 1.77855 1.30335 1.44459 1.21837 0.93362 1.01173 0.95902 0.89770 1.21663 1.01486 0.98803 0.93223 1.21565 0.92925 1.01945 0.98377 1.22337 0.97416 0.96053 0.92679 1.61923 1.09351 1.51588 1.03189 1.21579 0.87376 0.97560 0.98298 1.21548 0.88851 1.03278 1.01654 1.21391 0.91692 0.78260 0.80221 1.90634 1.69305 1.49967 1.38275 1.47986 1.08011 1.47059 1.30870 1.21991 0.96344 0.97524 0.90665 1.19340 0.78696 0.95113 0.96914 1.21569 0.92794 1.13163 1.30000 0.95452 1.25889 1.01317 0.96125 0.95570 1.70050 1.18940 1.29369 1.40258 0.85688 0.78315 0.78485 0.80278 1.20329 1.19850 1.15978 1.22027 0.96182 0.95970 0.92168 0.91399 0.92236 0.90087 0.76349 0.89412 0.92289 0.90865 0.89673 0.95636 0.89587 0.92587 0.95776 0.86182 0.86989 0.90034 0.91653 0.89096 0.93032 0.96519 0.92235 0.91807 0.96148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.19 71.98 0.66 -1.04 16 2 C 0.11 1.51 3.17 30.59 0.10 1.61 16 3 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 4 O -0.58 -10.50 12.68 -148.98 -1.89 -12.39 16 5 C -0.10 -1.53 2.12 -10.74 -0.02 -1.55 16 6 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 7 C -0.11 -1.31 4.86 30.67 0.15 -1.16 16 8 C -0.11 -1.36 6.09 30.65 0.19 -1.17 16 9 C 0.04 0.75 5.29 86.33 0.46 1.20 16 10 N -0.54 -12.09 4.66 -896.37 -4.17 -16.27 16 11 C 0.08 2.36 4.25 86.30 0.37 2.73 16 12 C -0.11 -3.17 4.18 29.85 0.12 -3.05 16 13 C 0.50 20.39 7.67 87.66 0.67 21.06 16 14 O -0.60 -31.07 15.56 -3.03 -0.05 -31.12 16 15 N -0.61 -24.94 2.86 -851.14 -2.43 -27.37 16 16 C 0.08 2.15 10.24 127.77 1.31 3.45 16 17 C 0.22 11.02 4.23 85.64 0.36 11.39 16 18 C -0.54 -32.28 9.94 25.60 0.25 -32.02 16 19 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 20 C 0.01 0.53 5.47 84.65 0.46 0.99 16 21 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 22 Si 0.95 45.16 27.47 68.60 1.88 47.05 16 23 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 25 H -0.24 -10.04 6.54 99.48 0.65 -9.39 16 26 C 0.06 1.40 4.59 86.33 0.40 1.79 16 27 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.08 0.58 6.49 -2.38 -0.02 0.56 16 30 H 0.39 4.43 9.05 -74.06 -0.67 3.76 16 31 H 0.09 0.69 6.58 -2.38 -0.02 0.68 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.03 0.49 8.14 -2.38 -0.02 0.47 16 36 H 0.09 1.35 6.21 -2.39 -0.01 1.34 16 37 H 0.06 1.94 7.95 -2.39 -0.02 1.92 16 38 H 0.02 0.78 8.08 -2.39 -0.02 0.76 16 39 H 0.12 2.52 6.39 -2.39 -0.02 2.50 16 40 H 0.11 2.85 7.40 -2.39 -0.02 2.84 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.06 1.98 8.07 -2.38 -0.02 1.96 16 43 H 0.09 2.01 6.44 -2.39 -0.02 2.00 16 44 H 0.05 2.33 7.13 -2.39 -0.02 2.31 16 45 H 0.02 0.89 6.85 -2.39 -0.02 0.88 16 46 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 47 H 0.06 1.60 7.58 -2.39 -0.02 1.58 16 48 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -80.64 371.24 -0.68 -81.32 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.20 Total: 15.08 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 5.48 Total: 4.23 kcal Atomic # 7 Polarization: -97.87 SS G_CDS: -6.31 Total: -104.18 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -1.94 Total: -43.51 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.05 kcal Total: -80.64 -0.68 -81.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092806363.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.776 kcal (2) G-P(sol) polarization free energy of solvation -80.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds