Wall clock time and date at job start Tue Mar 31 2020 04:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99907 * 2 1 4 4 C 1.52999 * 109.46727 * 63.70864 * 3 2 1 5 5 C 1.50702 * 109.46723 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00269 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99580 * 179.97438 * 5 4 3 8 8 C 1.46492 * 120.00406 * 0.02562 * 7 5 4 9 9 C 1.46503 * 119.99604 * 179.97438 * 7 5 4 10 10 C 1.50703 * 109.46856 * 90.00459 * 9 7 5 11 11 H 1.08000 * 120.00075 * 359.97438 * 10 9 7 12 12 C 1.37881 * 120.00124 * 179.97438 * 10 9 7 13 13 N 1.31515 * 120.00201 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99638 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47327 * 90.00137 * 14 12 10 16 16 H 1.48504 * 109.47108 * 209.99591 * 14 12 10 17 17 H 1.48499 * 109.47244 * 329.99336 * 14 12 10 18 18 C 1.46900 * 110.99923 * 236.04936 * 2 1 3 19 19 C 1.53001 * 109.47181 * 203.53345 * 18 2 1 20 20 O 1.42901 * 110.01714 * 53.82721 * 19 18 2 21 21 C 1.54274 * 110.03046 * 292.43741 * 19 18 2 22 22 C 1.54966 * 104.15711 * 217.13577 * 21 19 18 23 23 C 1.54881 * 102.78101 * 37.88722 * 22 21 19 24 24 C 1.53872 * 110.03388 * 175.22009 * 19 18 2 25 25 H 1.09001 * 109.46891 * 64.34549 * 1 2 3 26 26 H 1.08997 * 109.46562 * 184.34315 * 1 2 3 27 27 H 1.08997 * 109.47170 * 304.34463 * 1 2 3 28 28 H 1.09005 * 109.47174 * 303.71209 * 3 2 1 29 29 H 1.09002 * 109.47161 * 183.70806 * 3 2 1 30 30 H 1.08994 * 109.47527 * 299.99949 * 4 3 2 31 31 H 1.08997 * 109.47108 * 60.00585 * 4 3 2 32 32 H 1.08999 * 109.47615 * 89.99624 * 8 7 5 33 33 H 1.08999 * 109.47137 * 209.99688 * 8 7 5 34 34 H 1.09005 * 109.46719 * 329.99399 * 8 7 5 35 35 H 1.08998 * 109.47080 * 210.00003 * 9 7 5 36 36 H 1.08999 * 109.47587 * 330.00855 * 9 7 5 37 37 H 0.96995 * 120.00097 * 180.02562 * 13 12 10 38 38 H 1.08995 * 109.47268 * 323.53259 * 18 2 1 39 39 H 1.08999 * 109.47289 * 83.53687 * 18 2 1 40 40 H 0.96701 * 113.99497 * 305.46100 * 20 19 18 41 41 H 1.08993 * 110.48317 * 335.77881 * 21 19 18 42 42 H 1.09003 * 110.48650 * 98.42614 * 21 19 18 43 43 H 1.09003 * 110.71894 * 279.57326 * 22 21 19 44 44 H 1.09000 * 110.76682 * 156.22737 * 22 21 19 45 45 H 1.08999 * 110.48839 * 203.40562 * 23 22 21 46 46 H 1.09003 * 110.48714 * 80.75809 * 23 22 21 47 47 H 1.09005 * 110.03284 * 238.56508 * 24 19 18 48 48 H 1.08999 * 110.03352 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.5816 2.0765 1.2933 5 6 2.1222 3.4832 1.2936 6 8 2.7738 3.8827 0.3519 7 7 1.8807 4.2977 2.3399 8 6 1.0931 3.8154 3.4771 9 6 2.4066 5.6650 2.3404 10 6 1.3985 6.5912 1.7103 11 1 0.4602 6.2004 1.3456 12 6 1.6742 7.9376 1.5995 13 7 0.7947 8.7458 1.0492 14 14 3.2976 8.6135 2.2298 15 1 4.3074 8.5707 1.1419 16 1 3.1096 10.0176 2.6755 17 1 3.7662 7.7899 3.3731 18 6 1.9954 -0.7659 -1.1376 19 6 3.4129 -1.2449 -0.8178 20 8 3.4204 -1.9585 0.4203 21 6 4.3728 -0.0397 -0.7390 22 6 5.6912 -0.5639 -1.3623 23 6 5.1895 -1.4609 -2.5209 24 6 3.9320 -2.1484 -1.9500 25 1 -0.3633 0.4449 -0.9264 26 1 -0.3632 -1.0247 0.0778 27 1 -0.3633 0.5798 0.8485 28 1 1.5931 1.9151 -0.8549 29 1 3.0831 1.3432 -0.0665 30 1 0.4941 2.1048 1.3598 31 1 1.9840 1.5329 2.1481 32 1 1.7577 3.3656 4.2147 33 1 0.5599 4.6511 3.9303 34 1 0.3757 3.0707 3.1324 35 1 2.5982 5.9802 3.3661 36 1 3.3354 5.6974 1.7709 37 1 0.9888 9.6929 0.9709 38 1 1.3541 -1.6274 -1.3236 39 1 2.0176 -0.1315 -2.0237 40 1 3.0459 -1.4634 1.1618 41 1 3.9830 0.7968 -1.3189 42 1 4.5310 0.2548 0.2985 43 1 6.2547 -1.1499 -0.6362 44 1 6.2925 0.2609 -1.7447 45 1 5.9439 -2.2026 -2.7833 46 1 4.9316 -0.8542 -3.3890 47 1 4.1906 -3.1309 -1.5549 48 1 3.1740 -2.2460 -2.7271 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092807307.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:31 Heat of formation + Delta-G solvation = -105.617440 kcal Electronic energy + Delta-G solvation = -25475.065816 eV Core-core repulsion = 21949.969593 eV Total energy + Delta-G solvation = -3525.096223 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03762 -40.36977 -37.72217 -36.61172 -35.64941 -34.72948 -32.64064 -30.53956 -30.08726 -29.72754 -27.41714 -26.87960 -25.84831 -24.01980 -22.08372 -21.68018 -20.72333 -19.88761 -19.16669 -18.20262 -17.48413 -17.22014 -17.04050 -16.54976 -16.51811 -15.98892 -15.73325 -15.56307 -14.96198 -14.67220 -14.40122 -14.34911 -13.93952 -13.77042 -13.65507 -13.62229 -13.46580 -13.29206 -12.88343 -12.84285 -12.72990 -12.61682 -12.41568 -12.30875 -12.17200 -12.02486 -11.99624 -11.76500 -11.60889 -11.42376 -11.13557 -10.85114 -10.73549 -10.65562 -9.43864 -9.38475 -8.36098 -6.41338 1.31590 1.35602 1.44233 1.80318 2.26981 2.29648 2.89291 2.98559 3.34876 3.60462 3.73113 3.82611 3.88543 4.00626 4.11229 4.20318 4.30900 4.39621 4.48006 4.50721 4.56544 4.60789 4.65784 4.67193 4.71613 4.77861 4.83244 4.83829 4.90007 4.97675 4.99382 5.00538 5.03173 5.05290 5.08916 5.13537 5.18317 5.35469 5.43848 5.44399 5.61423 5.94038 6.00092 6.21917 6.59880 6.70486 6.97917 7.19712 7.42166 8.80953 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.020438 B = 0.003391 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.670090 B = 8254.045295 C = 8884.689438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.533 5.533 3 C 0.054 3.946 4 C -0.118 4.118 5 C 0.495 3.505 6 O -0.598 6.598 7 N -0.609 5.609 8 C 0.077 3.923 9 C 0.223 3.777 10 C -0.537 4.537 11 H 0.027 0.973 12 C 0.010 3.990 13 N -0.946 5.946 14 Si 0.949 3.051 15 H -0.277 1.277 16 H -0.274 1.274 17 H -0.237 1.237 18 C 0.030 3.970 19 C 0.141 3.859 20 O -0.564 6.564 21 C -0.153 4.153 22 C -0.126 4.126 23 C -0.121 4.121 24 C -0.112 4.112 25 H 0.018 0.982 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.013 0.987 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.127 0.873 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.018 0.982 37 H 0.269 0.731 38 H 0.092 0.908 39 H 0.040 0.960 40 H 0.388 0.612 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.953 -24.306 0.331 24.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.257 5.257 3 C -0.074 4.074 4 C -0.158 4.158 5 C 0.284 3.716 6 O -0.479 6.479 7 N -0.340 5.340 8 C -0.065 4.065 9 C 0.100 3.900 10 C -0.576 4.576 11 H 0.045 0.955 12 C -0.188 4.188 13 N -0.586 5.586 14 Si 0.772 3.228 15 H -0.202 1.202 16 H -0.199 1.199 17 H -0.160 1.160 18 C -0.098 4.098 19 C 0.100 3.900 20 O -0.372 6.372 21 C -0.191 4.191 22 C -0.163 4.163 23 C -0.159 4.159 24 C -0.150 4.150 25 H 0.037 0.963 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.031 0.969 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.145 0.855 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.068 0.932 36 H 0.036 0.964 37 H 0.078 0.922 38 H 0.110 0.890 39 H 0.059 0.941 40 H 0.238 0.762 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.647 -24.613 -0.093 25.048 hybrid contribution -0.385 2.120 -0.569 2.229 sum 4.262 -22.493 -0.662 22.903 Atomic orbital electron populations 1.22567 0.86271 1.03355 1.00926 1.61897 1.08878 1.12255 1.42683 1.22264 1.02256 0.87645 0.95236 1.21606 1.03001 0.89944 1.01264 1.21391 0.80014 0.88814 0.81362 1.90631 1.43109 1.78116 1.36078 1.47982 1.52854 1.13003 1.20120 1.21981 0.95869 1.00622 0.88040 1.19323 0.93828 0.79749 0.97096 1.21580 1.03190 0.93053 1.39771 0.95461 1.25881 1.00978 0.97117 0.94859 1.70050 1.37689 1.05013 1.45864 0.85694 0.78835 0.78350 0.79951 1.20235 1.19926 1.16015 1.22934 0.97019 0.98028 0.91810 1.21768 0.92125 0.90605 0.85499 1.86410 1.85561 1.46085 1.19186 1.23274 0.96827 0.97826 1.01172 1.22512 0.96634 0.99216 0.97942 1.22361 0.97073 0.98812 0.97649 1.22161 0.98022 0.99036 0.95785 0.96322 0.89474 0.90200 0.96856 0.88685 0.87662 0.85545 0.90070 0.91773 0.89116 0.93193 0.96425 0.92245 0.88976 0.94149 0.76242 0.91898 0.91514 0.91310 0.91708 0.90188 0.91263 0.90490 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.27 127.69 1.18 1.46 16 2 N -0.53 -10.43 3.83 -922.45 -3.53 -13.96 16 3 C 0.05 1.42 3.67 86.30 0.32 1.73 16 4 C -0.12 -3.07 4.13 29.85 0.12 -2.95 16 5 C 0.50 19.56 7.67 87.66 0.67 20.23 16 6 O -0.60 -29.71 15.56 -3.03 -0.05 -29.76 16 7 N -0.61 -24.30 2.86 -851.14 -2.43 -26.73 16 8 C 0.08 2.10 10.24 127.77 1.31 3.41 16 9 C 0.22 10.87 4.23 85.63 0.36 11.24 16 10 C -0.54 -31.89 9.94 25.60 0.25 -31.63 16 11 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 12 C 0.01 0.57 5.47 84.66 0.46 1.03 16 13 N -0.95 -60.22 13.96 21.45 0.30 -59.92 16 14 Si 0.95 44.67 27.47 68.60 1.88 46.55 16 15 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 16 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 17 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 18 C 0.03 0.57 4.14 86.30 0.36 0.93 16 19 C 0.14 2.73 1.14 -10.07 -0.01 2.72 16 20 O -0.56 -11.69 12.91 -148.98 -1.92 -13.62 16 21 C -0.15 -3.36 4.16 31.70 0.13 -3.23 16 22 C -0.13 -2.42 6.91 31.91 0.22 -2.20 16 23 C -0.12 -1.95 6.83 31.67 0.22 -1.73 16 24 C -0.11 -1.86 6.27 31.32 0.20 -1.66 16 25 H 0.02 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.09 1.17 8.07 -2.39 -0.02 1.15 16 27 H 0.08 1.26 6.20 -2.39 -0.01 1.25 16 28 H 0.01 0.42 8.10 -2.38 -0.02 0.40 16 29 H 0.10 2.68 3.66 -2.39 -0.01 2.67 16 30 H 0.11 2.40 5.66 -2.39 -0.01 2.39 16 31 H 0.13 2.50 8.11 -2.39 -0.02 2.48 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 1.91 8.07 -2.39 -0.02 1.89 16 34 H 0.09 1.92 6.44 -2.38 -0.02 1.90 16 35 H 0.05 2.23 7.13 -2.39 -0.02 2.21 16 36 H 0.02 0.93 6.85 -2.39 -0.02 0.91 16 37 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 38 H 0.09 1.50 7.83 -2.39 -0.02 1.48 16 39 H 0.04 0.84 7.81 -2.39 -0.02 0.82 16 40 H 0.39 6.94 8.24 -74.06 -0.61 6.33 16 41 H 0.06 1.58 6.27 -2.39 -0.02 1.57 16 42 H 0.07 1.56 7.48 -2.39 -0.02 1.54 16 43 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.08 1.31 7.96 -2.38 -0.02 1.29 16 48 H 0.08 1.16 7.67 -2.39 -0.02 1.14 16 Total: -1.00 -76.83 368.15 0.32 -76.52 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.27 Total: 21.58 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 5.79 Total: -0.66 kcal Atomic # 7 Polarization: -94.94 SS G_CDS: -5.67 Total: -100.61 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -1.97 Total: -43.37 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.55 kcal Total: -76.83 0.32 -76.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092807307.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.102 kcal (2) G-P(sol) polarization free energy of solvation -76.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds