Wall clock time and date at job start Tue Mar 31 2020 04:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47233 * 2 1 4 4 O 1.42903 * 109.47101 * 120.00134 * 2 1 3 5 5 C 1.53001 * 109.46795 * 240.00086 * 2 1 3 6 6 C 1.53004 * 109.46894 * 174.59123 * 5 2 1 7 7 H 1.09003 * 109.90555 * 55.44345 * 6 5 2 8 8 C 1.53999 * 109.91714 * 294.33752 * 6 5 2 9 9 C 1.54594 * 105.14044 * 239.42182 * 8 6 5 10 10 C 1.54932 * 102.92096 * 338.04414 * 9 8 6 11 11 N 1.47905 * 109.91534 * 176.75203 * 6 5 2 12 12 C 1.46900 * 110.99624 * 265.19734 * 11 6 5 13 13 C 1.53004 * 109.46690 * 184.16014 * 12 11 6 14 14 C 1.50703 * 109.46885 * 180.02562 * 13 12 11 15 15 O 1.21281 * 120.00151 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99961 * 180.02562 * 14 13 12 17 17 C 1.46491 * 119.99898 * 359.97438 * 16 14 13 18 18 C 1.46501 * 119.99684 * 179.97438 * 16 14 13 19 19 C 1.50698 * 109.47096 * 90.00072 * 18 16 14 20 20 H 1.07994 * 120.00283 * 359.97438 * 19 18 16 21 21 C 1.37879 * 119.99878 * 180.02562 * 19 18 16 22 22 N 1.31523 * 119.99892 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00164 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47639 * 89.99451 * 23 21 19 25 25 H 1.48504 * 109.47056 * 209.99422 * 23 21 19 26 26 H 1.48506 * 109.46872 * 329.99293 * 23 21 19 27 27 H 1.08997 * 109.47233 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46979 * 299.99629 * 1 2 3 29 29 H 1.08995 * 109.47031 * 59.99614 * 1 2 3 30 30 H 0.96696 * 113.99738 * 299.99331 * 4 2 1 31 31 H 1.08998 * 109.47180 * 54.59221 * 5 2 1 32 32 H 1.08991 * 109.47228 * 294.59012 * 5 2 1 33 33 H 1.09006 * 110.30385 * 120.50656 * 8 6 5 34 34 H 1.09003 * 110.39040 * 358.38831 * 8 6 5 35 35 H 1.09001 * 110.72219 * 96.40312 * 9 8 6 36 36 H 1.09002 * 110.72329 * 219.68547 * 9 8 6 37 37 H 1.09011 * 110.66353 * 155.84529 * 10 9 8 38 38 H 1.09000 * 110.66984 * 278.97424 * 10 9 8 39 39 H 1.09005 * 109.47202 * 304.15583 * 12 11 6 40 40 H 1.08996 * 109.47666 * 64.15875 * 12 11 6 41 41 H 1.09003 * 109.47113 * 299.99213 * 13 12 11 42 42 H 1.08990 * 109.47401 * 59.99976 * 13 12 11 43 43 H 1.09006 * 109.47273 * 90.00711 * 17 16 14 44 44 H 1.09003 * 109.47398 * 209.99927 * 17 16 14 45 45 H 1.09000 * 109.47446 * 330.00431 * 17 16 14 46 46 H 1.09000 * 109.46865 * 209.99335 * 18 16 14 47 47 H 1.08997 * 109.47511 * 329.99409 * 18 16 14 48 48 H 0.96994 * 119.99756 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2493 6 6 3.5639 -0.6046 -1.3191 7 1 4.0078 -0.9844 -0.3989 8 6 3.9684 0.8665 -1.5285 9 6 4.7610 0.8824 -2.8557 10 6 5.2307 -0.5873 -2.9963 11 7 4.0747 -1.3644 -2.4808 12 6 4.4849 -2.7183 -2.0849 13 6 5.1019 -3.4361 -3.2871 14 6 5.5221 -4.8253 -2.8812 15 8 5.3460 -5.2038 -1.7425 16 7 6.0947 -5.6467 -3.7834 17 6 6.3080 -5.1893 -5.1587 18 6 6.5037 -6.9969 -3.3887 19 6 5.3624 -7.9543 -3.6165 20 1 4.4260 -7.5931 -4.0151 21 6 5.5135 -9.2912 -3.3152 22 7 6.6538 -9.7311 -2.8293 23 14 4.0987 -10.4779 -3.5969 24 1 4.1844 -11.0332 -4.9715 25 1 4.1770 -11.5848 -2.6101 26 1 2.8096 -9.7589 -3.4330 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.7211 -0.2701 1.9979 31 1 1.5997 -0.2664 -2.1366 32 1 1.7579 -1.7730 -1.2022 33 1 4.5993 1.2060 -0.7070 34 1 3.0823 1.4962 -1.6093 35 1 4.1146 1.1620 -3.6877 36 1 5.6156 1.5555 -2.7866 37 1 5.4230 -0.8314 -4.0412 38 1 6.1174 -0.7677 -2.3885 39 1 5.2202 -2.6553 -1.2828 40 1 3.6145 -3.2746 -1.7371 41 1 4.3665 -3.4992 -4.0892 42 1 5.9722 -2.8799 -3.6349 43 1 7.2879 -4.7184 -5.2371 44 1 6.2592 -6.0414 -5.8367 45 1 5.5357 -4.4679 -5.4256 46 1 7.3617 -7.3058 -3.9859 47 1 6.7756 -7.0003 -2.3332 48 1 6.7602 -10.6716 -2.6177 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092807314.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:04 Heat of formation + Delta-G solvation = -94.648601 kcal Electronic energy + Delta-G solvation = -24886.396801 eV Core-core repulsion = 21361.776223 eV Total energy + Delta-G solvation = -3524.620578 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.73093 -38.74501 -37.43854 -34.78857 -33.47848 -32.56346 -32.37983 -29.96051 -29.26212 -27.50371 -25.86000 -25.63223 -23.73300 -22.18350 -21.97087 -20.52500 -19.93546 -18.18219 -17.59593 -16.58443 -16.46833 -15.96728 -15.27481 -15.23999 -15.14062 -14.87210 -14.44111 -14.15926 -13.81544 -13.66152 -13.13504 -12.84249 -12.74820 -12.54262 -12.30432 -12.19375 -12.10313 -11.99246 -11.76318 -11.68758 -11.39431 -11.26868 -11.11361 -10.89837 -10.85847 -10.77231 -10.63943 -10.57610 -10.47212 -10.15350 -10.11671 -9.58270 -8.82186 -8.41115 -8.39911 -7.58272 -6.00572 -4.05127 3.32848 3.39240 3.43401 3.52510 3.72415 4.06859 4.17830 4.47406 4.52331 4.55881 4.74673 4.76790 4.88935 4.97290 5.18127 5.23416 5.29231 5.34003 5.35465 5.39727 5.42665 5.48000 5.57463 5.64241 5.66028 5.67325 5.77391 5.82264 5.84579 5.90301 5.96596 5.98413 6.09920 6.13466 6.22899 6.27059 6.28927 6.92938 7.08709 7.11366 7.46756 7.49050 7.59949 7.96294 8.27996 8.48309 8.94898 9.16510 9.59930 11.07563 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.017058 B = 0.003171 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.026311 B = 8827.108680 C = 9906.171032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.099 3.901 3 H 0.054 0.946 4 O -0.564 6.564 5 C -0.097 4.097 6 C 0.069 3.931 7 H 0.063 0.937 8 C -0.127 4.127 9 C -0.123 4.123 10 C 0.031 3.969 11 N -0.516 5.516 12 C 0.066 3.934 13 C -0.135 4.135 14 C 0.504 3.496 15 O -0.544 6.544 16 N -0.604 5.604 17 C 0.084 3.916 18 C 0.245 3.755 19 C -0.525 4.525 20 H 0.057 0.943 21 C 0.060 3.940 22 N -0.896 5.896 23 Si 0.898 3.102 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.374 0.626 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.042 0.958 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.031 0.969 47 H 0.043 0.957 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.801 24.885 0.205 25.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.040 3.960 3 H 0.072 0.928 4 O -0.369 6.369 5 C -0.135 4.135 6 C -0.039 4.039 7 H 0.081 0.919 8 C -0.165 4.165 9 C -0.161 4.161 10 C -0.096 4.096 11 N -0.240 5.240 12 C -0.062 4.062 13 C -0.176 4.176 14 C 0.290 3.710 15 O -0.422 6.422 16 N -0.336 5.336 17 C -0.060 4.060 18 C 0.125 3.875 19 C -0.564 4.564 20 H 0.075 0.925 21 C -0.142 4.142 22 N -0.535 5.535 23 Si 0.726 3.274 24 H -0.207 1.207 25 H -0.211 1.211 26 H -0.199 1.199 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.220 0.780 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.101 0.899 43 H 0.061 0.939 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.049 0.951 47 H 0.061 0.939 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.910 24.024 0.011 24.998 hybrid contribution -0.385 -0.387 0.734 0.915 sum -7.296 23.637 0.745 24.748 Atomic orbital electron populations 1.22514 0.96612 1.03043 1.02195 1.21880 0.92547 0.95261 0.86343 0.92815 1.86614 1.76918 1.57580 1.15784 1.21552 0.94743 1.01949 0.95236 1.22309 0.95555 0.92877 0.93199 0.91910 1.22501 1.00177 0.96163 0.97691 1.22476 0.99649 0.96276 0.97730 1.23248 0.92743 0.92800 1.00844 1.64688 1.28646 1.01966 1.28740 1.21969 1.00264 0.88323 0.95622 1.21656 1.01732 0.94316 0.99866 1.20315 0.78485 0.86500 0.85699 1.90669 1.54935 1.76755 1.19837 1.48156 1.59626 1.16406 1.09453 1.21625 0.99571 1.00262 0.84538 1.19274 0.95342 0.75611 0.97244 1.21450 0.99358 0.92586 1.42980 0.92463 1.24948 0.95989 0.98237 0.95026 1.69939 1.24277 1.15343 1.43955 0.86490 0.82613 0.80499 0.77791 1.20654 1.21087 1.19864 0.91609 0.92560 0.91600 0.77990 0.90127 0.90812 0.91732 0.91138 0.90835 0.91324 0.89907 0.93688 0.93930 0.89800 0.88787 0.89922 0.93908 0.90869 0.92339 0.95094 0.93897 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.36 9.53 37.16 0.35 -1.00 16 2 C 0.10 0.86 3.45 -26.73 -0.09 0.77 16 3 H 0.05 0.40 6.76 -51.93 -0.35 0.05 16 4 O -0.56 -5.78 12.81 -35.23 -0.45 -6.23 16 5 C -0.10 -1.03 4.55 -26.73 -0.12 -1.15 16 6 C 0.07 0.79 2.47 -66.64 -0.16 0.63 16 7 H 0.06 0.86 7.28 -51.93 -0.38 0.48 16 8 C -0.13 -1.13 5.93 -25.37 -0.15 -1.28 16 9 C -0.12 -1.05 7.06 -24.87 -0.18 -1.23 16 10 C 0.03 0.33 5.35 -1.90 -0.01 0.32 16 11 N -0.52 -6.50 4.98 -222.56 -1.11 -7.61 16 12 C 0.07 1.03 4.13 -3.82 -0.02 1.02 16 13 C -0.14 -2.11 4.07 -27.88 -0.11 -2.23 16 14 C 0.50 10.88 7.67 -10.98 -0.08 10.80 16 15 O -0.54 -14.24 15.56 5.56 0.09 -14.15 16 16 N -0.60 -13.29 2.86 -182.96 -0.52 -13.81 16 17 C 0.08 1.37 10.24 59.84 0.61 1.99 16 18 C 0.24 6.62 5.16 -5.19 -0.03 6.59 16 19 C -0.52 -15.32 9.39 -34.44 -0.32 -15.65 16 20 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 23 Si 0.90 22.35 29.54 -169.99 -5.02 17.32 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.37 2.20 9.08 45.56 0.41 2.62 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.54 6.85 -51.93 -0.36 0.18 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.81 7.66 -51.92 -0.40 0.41 16 38 H 0.04 0.50 8.01 -51.93 -0.42 0.09 16 39 H 0.04 0.72 7.94 -51.93 -0.41 0.31 16 40 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 41 H 0.09 1.37 7.40 -51.93 -0.38 0.98 16 42 H 0.08 1.10 6.87 -51.93 -0.36 0.75 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 45 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 46 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 47 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 48 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -35.00 380.18 -8.93 -43.93 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.97 Total: 0.07 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -0.41 Total: 1.23 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -0.90 Total: -47.91 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.36 Total: -20.38 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.00 -8.93 -43.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092807314.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.719 kcal (2) G-P(sol) polarization free energy of solvation -35.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds