Wall clock time and date at job start Tue Mar 31 2020 04:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47233 * 2 1 4 4 O 1.42903 * 109.47101 * 120.00134 * 2 1 3 5 5 C 1.53001 * 109.46795 * 240.00086 * 2 1 3 6 6 C 1.53004 * 109.46894 * 174.59123 * 5 2 1 7 7 H 1.09003 * 109.90555 * 55.44345 * 6 5 2 8 8 C 1.53999 * 109.91714 * 294.33752 * 6 5 2 9 9 C 1.54594 * 105.14044 * 239.42182 * 8 6 5 10 10 C 1.54932 * 102.92096 * 338.04414 * 9 8 6 11 11 N 1.47905 * 109.91534 * 176.75203 * 6 5 2 12 12 C 1.46900 * 110.99624 * 265.19734 * 11 6 5 13 13 C 1.53004 * 109.46690 * 184.16014 * 12 11 6 14 14 C 1.50703 * 109.46885 * 180.02562 * 13 12 11 15 15 O 1.21281 * 120.00151 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99961 * 180.02562 * 14 13 12 17 17 C 1.46491 * 119.99898 * 359.97438 * 16 14 13 18 18 C 1.46501 * 119.99684 * 179.97438 * 16 14 13 19 19 C 1.50698 * 109.47096 * 90.00072 * 18 16 14 20 20 H 1.07994 * 120.00283 * 359.97438 * 19 18 16 21 21 C 1.37879 * 119.99878 * 180.02562 * 19 18 16 22 22 N 1.31523 * 119.99892 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00164 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47639 * 89.99451 * 23 21 19 25 25 H 1.48504 * 109.47056 * 209.99422 * 23 21 19 26 26 H 1.48506 * 109.46872 * 329.99293 * 23 21 19 27 27 H 1.08997 * 109.47233 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46979 * 299.99629 * 1 2 3 29 29 H 1.08995 * 109.47031 * 59.99614 * 1 2 3 30 30 H 0.96696 * 113.99738 * 299.99331 * 4 2 1 31 31 H 1.08998 * 109.47180 * 54.59221 * 5 2 1 32 32 H 1.08991 * 109.47228 * 294.59012 * 5 2 1 33 33 H 1.09006 * 110.30385 * 120.50656 * 8 6 5 34 34 H 1.09003 * 110.39040 * 358.38831 * 8 6 5 35 35 H 1.09001 * 110.72219 * 96.40312 * 9 8 6 36 36 H 1.09002 * 110.72329 * 219.68547 * 9 8 6 37 37 H 1.09011 * 110.66353 * 155.84529 * 10 9 8 38 38 H 1.09000 * 110.66984 * 278.97424 * 10 9 8 39 39 H 1.09005 * 109.47202 * 304.15583 * 12 11 6 40 40 H 1.08996 * 109.47666 * 64.15875 * 12 11 6 41 41 H 1.09003 * 109.47113 * 299.99213 * 13 12 11 42 42 H 1.08990 * 109.47401 * 59.99976 * 13 12 11 43 43 H 1.09006 * 109.47273 * 90.00711 * 17 16 14 44 44 H 1.09003 * 109.47398 * 209.99927 * 17 16 14 45 45 H 1.09000 * 109.47446 * 330.00431 * 17 16 14 46 46 H 1.09000 * 109.46865 * 209.99335 * 18 16 14 47 47 H 1.08997 * 109.47511 * 329.99409 * 18 16 14 48 48 H 0.96994 * 119.99756 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2493 6 6 3.5639 -0.6046 -1.3191 7 1 4.0078 -0.9844 -0.3989 8 6 3.9684 0.8665 -1.5285 9 6 4.7610 0.8824 -2.8557 10 6 5.2307 -0.5873 -2.9963 11 7 4.0747 -1.3644 -2.4808 12 6 4.4849 -2.7183 -2.0849 13 6 5.1019 -3.4361 -3.2871 14 6 5.5221 -4.8253 -2.8812 15 8 5.3460 -5.2038 -1.7425 16 7 6.0947 -5.6467 -3.7834 17 6 6.3080 -5.1893 -5.1587 18 6 6.5037 -6.9969 -3.3887 19 6 5.3624 -7.9543 -3.6165 20 1 4.4260 -7.5931 -4.0151 21 6 5.5135 -9.2912 -3.3152 22 7 6.6538 -9.7311 -2.8293 23 14 4.0987 -10.4779 -3.5969 24 1 4.1844 -11.0332 -4.9715 25 1 4.1770 -11.5848 -2.6101 26 1 2.8096 -9.7589 -3.4330 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.7211 -0.2701 1.9979 31 1 1.5997 -0.2664 -2.1366 32 1 1.7579 -1.7730 -1.2022 33 1 4.5993 1.2060 -0.7070 34 1 3.0823 1.4962 -1.6093 35 1 4.1146 1.1620 -3.6877 36 1 5.6156 1.5555 -2.7866 37 1 5.4230 -0.8314 -4.0412 38 1 6.1174 -0.7677 -2.3885 39 1 5.2202 -2.6553 -1.2828 40 1 3.6145 -3.2746 -1.7371 41 1 4.3665 -3.4992 -4.0892 42 1 5.9722 -2.8799 -3.6349 43 1 7.2879 -4.7184 -5.2371 44 1 6.2592 -6.0414 -5.8367 45 1 5.5357 -4.4679 -5.4256 46 1 7.3617 -7.3058 -3.9859 47 1 6.7756 -7.0003 -2.3332 48 1 6.7602 -10.6716 -2.6177 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092807314.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:02 Heat of formation + Delta-G solvation = -121.354464 kcal Electronic energy + Delta-G solvation = -24887.554854 eV Core-core repulsion = 21361.776223 eV Total energy + Delta-G solvation = -3525.778632 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.94413 -40.14886 -38.22919 -36.63877 -34.86839 -34.43491 -33.21424 -31.00857 -30.36896 -29.24251 -27.29873 -26.58858 -25.42223 -23.67486 -22.72199 -21.54351 -20.82905 -19.80153 -18.72317 -18.34746 -17.97802 -17.16698 -16.85693 -16.56254 -16.37655 -16.09372 -15.72754 -15.17472 -15.15681 -14.54221 -14.41031 -14.25523 -13.81976 -13.76484 -13.53105 -13.46721 -13.33853 -13.21349 -12.98961 -12.92717 -12.81649 -12.67314 -12.56132 -12.28752 -12.22545 -12.08023 -11.88189 -11.72323 -11.58588 -11.53429 -11.31487 -10.85273 -10.66014 -10.62883 -9.46234 -9.42817 -8.24425 -6.39664 1.34643 1.38264 1.48687 1.81206 2.27215 2.41056 2.96653 3.04881 3.43589 3.65794 3.73461 3.83319 3.96779 4.04781 4.12198 4.13555 4.26517 4.30057 4.39138 4.42741 4.54709 4.59719 4.62659 4.70840 4.77934 4.86210 4.87712 4.90594 4.95032 4.98941 5.01532 5.04280 5.07621 5.16032 5.20632 5.22128 5.28296 5.34614 5.38904 5.54378 5.82615 5.98998 6.01759 6.04228 6.67474 6.76956 6.94459 7.26032 7.46338 8.82823 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.017058 B = 0.003171 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.026311 B = 8827.108680 C = 9906.171032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.099 3.901 3 H 0.075 0.925 4 O -0.592 6.592 5 C -0.096 4.096 6 C 0.065 3.935 7 H 0.031 0.969 8 C -0.122 4.122 9 C -0.115 4.115 10 C 0.023 3.977 11 N -0.514 5.514 12 C 0.077 3.923 13 C -0.113 4.113 14 C 0.493 3.507 15 O -0.603 6.603 16 N -0.611 5.611 17 C 0.078 3.922 18 C 0.258 3.742 19 C -0.544 4.544 20 H 0.053 0.947 21 C 0.006 3.994 22 N -0.929 5.929 23 Si 0.970 3.030 24 H -0.260 1.260 25 H -0.280 1.280 26 H -0.274 1.274 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.391 0.609 31 H 0.095 0.905 32 H 0.040 0.960 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.036 0.964 39 H 0.018 0.982 40 H 0.053 0.947 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.095 0.905 46 H 0.025 0.975 47 H -0.005 1.005 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.941 27.367 -1.876 28.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.040 3.960 3 H 0.093 0.907 4 O -0.401 6.401 5 C -0.134 4.134 6 C -0.043 4.043 7 H 0.049 0.951 8 C -0.160 4.160 9 C -0.153 4.153 10 C -0.105 4.105 11 N -0.238 5.238 12 C -0.052 4.052 13 C -0.153 4.153 14 C 0.282 3.718 15 O -0.485 6.485 16 N -0.342 5.342 17 C -0.064 4.064 18 C 0.136 3.864 19 C -0.583 4.583 20 H 0.071 0.929 21 C -0.193 4.193 22 N -0.569 5.569 23 Si 0.794 3.206 24 H -0.185 1.185 25 H -0.205 1.205 26 H -0.199 1.199 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.240 0.760 31 H 0.114 0.886 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.055 0.945 39 H 0.036 0.964 40 H 0.071 0.929 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.114 0.886 46 H 0.043 0.957 47 H 0.013 0.987 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.045 26.551 -2.113 27.823 hybrid contribution 0.019 -1.131 1.418 1.814 sum -8.026 25.420 -0.694 26.666 Atomic orbital electron populations 1.22473 0.95447 1.02286 1.03712 1.21945 0.93412 0.95616 0.85005 0.90685 1.86577 1.77544 1.58755 1.17207 1.21566 0.94307 1.00366 0.97132 1.22366 0.95906 0.94580 0.91465 0.95088 1.22488 1.01196 0.94020 0.98277 1.22481 1.00359 0.94866 0.97602 1.23433 0.91665 0.94077 1.01297 1.64735 1.29456 1.00705 1.28888 1.21706 0.98228 0.90198 0.95040 1.21556 1.03402 0.90252 1.00083 1.21395 0.77253 0.88433 0.84763 1.90637 1.57140 1.78283 1.22468 1.48205 1.59295 1.14660 1.12038 1.21955 1.02581 1.00959 0.80894 1.18755 0.94803 0.78482 0.94323 1.21713 0.99640 0.93549 1.43398 0.92922 1.25903 0.98826 1.00151 0.94426 1.70058 1.26322 1.16034 1.44493 0.85382 0.78682 0.77876 0.78668 1.18498 1.20526 1.19892 0.93481 0.90847 0.90278 0.76017 0.88625 0.94129 0.91439 0.89157 0.89668 0.89527 0.88356 0.94521 0.96365 0.92884 0.86528 0.86527 0.90978 0.91544 0.88637 0.95706 0.98708 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 9.53 71.98 0.69 -1.72 16 2 C 0.10 1.63 3.45 30.60 0.11 1.73 16 3 H 0.08 0.92 6.76 -2.39 -0.02 0.91 16 4 O -0.59 -12.31 12.81 -148.98 -1.91 -14.22 16 5 C -0.10 -2.01 4.55 30.60 0.14 -1.87 16 6 C 0.07 1.48 2.47 45.06 0.11 1.59 16 7 H 0.03 0.90 7.28 -2.39 -0.02 0.88 16 8 C -0.12 -1.86 5.93 31.47 0.19 -1.68 16 9 C -0.12 -1.56 7.06 31.80 0.22 -1.34 16 10 C 0.02 0.42 5.35 86.65 0.46 0.88 16 11 N -0.51 -12.50 4.98 -858.05 -4.28 -16.77 16 12 C 0.08 2.48 4.13 86.30 0.36 2.84 16 13 C -0.11 -3.41 4.07 29.85 0.12 -3.28 16 14 C 0.49 21.77 7.67 87.66 0.67 22.44 16 15 O -0.60 -33.55 15.56 -3.03 -0.05 -33.60 16 16 N -0.61 -27.13 2.86 -851.14 -2.43 -29.56 16 17 C 0.08 2.38 10.24 127.77 1.31 3.68 16 18 C 0.26 14.55 5.16 85.63 0.44 14.99 16 19 C -0.54 -32.63 9.39 25.60 0.24 -32.39 16 20 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 21 C 0.01 0.34 5.46 84.65 0.46 0.80 16 22 N -0.93 -57.81 13.29 21.45 0.28 -57.53 16 23 Si 0.97 46.22 29.54 68.60 2.03 48.25 16 24 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 26 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.39 4.49 9.08 -74.06 -0.67 3.81 16 31 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.09 1.05 6.85 -2.39 -0.02 1.03 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 36 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.10 1.54 7.66 -2.38 -0.02 1.52 16 38 H 0.04 0.76 8.01 -2.39 -0.02 0.74 16 39 H 0.02 0.66 7.94 -2.38 -0.02 0.64 16 40 H 0.05 2.00 8.10 -2.39 -0.02 1.98 16 41 H 0.12 3.06 7.40 -2.39 -0.02 3.04 16 42 H 0.12 2.76 6.87 -2.39 -0.02 2.75 16 43 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 44 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 45 H 0.10 2.20 6.44 -2.39 -0.02 2.19 16 46 H 0.02 1.41 8.07 -2.39 -0.02 1.39 16 47 H -0.01 -0.34 7.42 -2.39 -0.02 -0.36 16 48 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -81.36 380.18 -0.58 -81.95 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.25 Total: 14.79 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 5.52 Total: 6.69 kcal Atomic # 7 Polarization: -97.44 SS G_CDS: -6.42 Total: -103.86 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -1.96 Total: -47.82 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -81.36 -0.58 -81.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092807314.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.407 kcal (2) G-P(sol) polarization free energy of solvation -81.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds