Wall clock time and date at job start Tue Mar 31 2020 04:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 110.99844 * 2 1 4 4 C 1.53001 * 109.47333 * 293.95739 * 3 2 1 5 5 C 1.50704 * 109.47403 * 180.02562 * 4 3 2 6 6 O 1.21280 * 119.99425 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00209 * 180.02562 * 5 4 3 8 8 C 1.46501 * 119.99857 * 359.97438 * 7 5 4 9 9 C 1.46499 * 120.00013 * 179.97438 * 7 5 4 10 10 C 1.50703 * 109.46957 * 89.99966 * 9 7 5 11 11 H 1.07999 * 120.00236 * 359.97438 * 10 9 7 12 12 C 1.37879 * 119.99790 * 179.72541 * 10 9 7 13 13 N 1.31508 * 119.99985 * 0.27423 * 12 10 9 14 14 Si 1.86801 * 119.99817 * 180.27435 * 12 10 9 15 15 H 1.48502 * 109.47060 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47137 * 119.99960 * 14 12 10 17 17 H 1.48497 * 109.47010 * 239.99904 * 14 12 10 18 18 C 1.46896 * 111.00296 * 123.95736 * 2 1 3 19 19 C 1.53005 * 109.46895 * 160.25605 * 18 2 1 20 20 H 1.09004 * 110.01775 * 54.63449 * 19 18 2 21 21 C 1.54265 * 110.03390 * 293.18959 * 19 18 2 22 22 C 1.54888 * 104.19541 * 217.10556 * 21 19 18 23 23 C 1.54888 * 102.74906 * 37.94361 * 22 21 19 24 24 C 1.53880 * 110.02975 * 176.02124 * 19 18 2 25 25 H 1.08994 * 110.03365 * 238.56846 * 24 19 18 26 26 O 1.42898 * 110.03408 * 0.02562 * 24 19 18 27 27 H 1.08994 * 109.47452 * 65.35605 * 1 2 3 28 28 H 1.09006 * 109.46911 * 185.35893 * 1 2 3 29 29 H 1.08998 * 109.46425 * 305.35233 * 1 2 3 30 30 H 1.09001 * 109.47166 * 173.96037 * 3 2 1 31 31 H 1.08991 * 109.47375 * 53.95958 * 3 2 1 32 32 H 1.09001 * 109.46751 * 60.00043 * 4 3 2 33 33 H 1.09002 * 109.46894 * 299.99976 * 4 3 2 34 34 H 1.08993 * 109.47389 * 270.00314 * 8 7 5 35 35 H 1.09003 * 109.46852 * 30.00588 * 8 7 5 36 36 H 1.09003 * 109.47010 * 150.00299 * 8 7 5 37 37 H 1.09003 * 109.47005 * 329.99954 * 9 7 5 38 38 H 1.08996 * 109.47389 * 209.99704 * 9 7 5 39 39 H 0.97001 * 120.00276 * 180.02562 * 13 12 10 40 40 H 1.08993 * 109.47201 * 280.25601 * 18 2 1 41 41 H 1.09003 * 109.47304 * 40.26151 * 18 2 1 42 42 H 1.08995 * 110.48716 * 335.78849 * 21 19 18 43 43 H 1.09001 * 110.48255 * 98.43134 * 21 19 18 44 44 H 1.09001 * 110.75694 * 279.62907 * 22 21 19 45 45 H 1.09002 * 110.75770 * 156.25619 * 22 21 19 46 46 H 1.09003 * 110.48456 * 203.37594 * 23 22 21 47 47 H 1.09004 * 110.59838 * 80.79193 * 23 22 21 48 48 H 0.96692 * 114.00195 * 179.97438 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6313 2.0575 -1.3182 5 6 2.1719 3.4643 -1.3185 6 8 2.7873 3.8775 -0.3586 7 7 1.9706 4.2634 -2.3849 8 6 1.2267 3.7643 -3.5442 9 6 2.4956 5.6310 -2.3849 10 6 3.8876 5.6347 -2.9623 11 1 4.3365 4.7107 -3.2956 12 6 4.5862 6.8186 -3.0699 13 7 4.0398 7.9437 -2.6637 14 14 6.3087 6.8242 -3.7927 15 1 6.6911 5.4402 -4.1714 16 1 6.3372 7.6923 -4.9973 17 1 7.2667 7.3449 -2.7847 18 6 1.9955 -0.7660 1.1375 19 6 3.4458 -1.1643 0.8565 20 1 4.0362 -0.2796 0.6179 21 6 3.5009 -2.1689 -0.3129 22 6 4.6322 -3.1503 0.0824 23 6 4.4386 -3.2967 1.6121 24 6 4.0421 -1.8814 2.0805 25 1 4.9222 -1.3453 2.4353 26 8 3.0667 -1.9661 3.1214 27 1 -0.3634 0.4285 -0.9340 28 1 -0.3633 -1.0232 0.0960 29 1 -0.3632 0.5946 0.8382 30 1 3.0797 1.3444 0.1081 31 1 1.5612 1.9273 0.8309 32 1 0.5470 2.0845 -1.4263 33 1 2.0657 1.5016 -2.1492 34 1 1.9187 3.3040 -4.2493 35 1 0.4965 3.0245 -3.2162 36 1 0.7113 4.5931 -4.0295 37 1 2.5252 6.0089 -1.3629 38 1 1.8500 6.2681 -2.9893 39 1 4.5311 8.7766 -2.7398 40 1 1.9549 -0.1534 2.0380 41 1 1.3936 -1.6634 1.2810 42 1 2.5525 -2.6978 -0.4065 43 1 3.7472 -1.6577 -1.2436 44 1 5.6097 -2.7245 -0.1443 45 1 4.5027 -4.1105 -0.4170 46 1 5.3692 -3.6087 2.0862 47 1 3.6425 -4.0083 1.8315 48 1 3.3822 -2.4088 3.9210 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092807607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:39 Heat of formation + Delta-G solvation = -93.751178 kcal Electronic energy + Delta-G solvation = -24965.675952 eV Core-core repulsion = 21441.094288 eV Total energy + Delta-G solvation = -3524.581663 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.57215 -38.91352 -37.02295 -35.10348 -34.73532 -32.63136 -31.37752 -29.86857 -27.77720 -27.74712 -26.22370 -25.66615 -24.32871 -22.51471 -21.25416 -20.78068 -19.55922 -18.31893 -17.56431 -16.53178 -16.32898 -16.09775 -15.45826 -15.23407 -14.83369 -14.62585 -14.59221 -14.29505 -13.92695 -13.83176 -13.50681 -12.93331 -12.57762 -12.47640 -12.17164 -12.05919 -11.92653 -11.83015 -11.75698 -11.51487 -11.31128 -11.20752 -11.15524 -10.89387 -10.80218 -10.72138 -10.67199 -10.54238 -10.45822 -10.12491 -9.99348 -9.57672 -8.83166 -8.41209 -8.25236 -7.58763 -6.01623 -4.05953 3.31426 3.38432 3.42306 3.51910 3.75257 4.02011 4.20051 4.40478 4.47034 4.50757 4.76561 5.01953 5.11455 5.14760 5.27234 5.30235 5.30899 5.39117 5.41958 5.44643 5.47951 5.51426 5.59268 5.64274 5.68518 5.75583 5.82367 5.87275 5.93760 5.98032 6.03779 6.05743 6.14403 6.20175 6.24522 6.26356 6.33711 7.08311 7.11671 7.14587 7.45376 7.47659 7.59639 7.95192 8.27132 8.47505 8.94149 9.15799 9.59054 11.06547 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.016837 B = 0.003199 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.640229 B = 8751.155262 C = 9579.967602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.546 5.546 3 C 0.072 3.928 4 C -0.134 4.134 5 C 0.504 3.496 6 O -0.546 6.546 7 N -0.604 5.604 8 C 0.087 3.913 9 C 0.244 3.756 10 C -0.523 4.523 11 H 0.057 0.943 12 C 0.059 3.941 13 N -0.896 5.896 14 Si 0.898 3.102 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.079 3.921 19 C -0.084 4.084 20 H 0.082 0.918 21 C -0.103 4.103 22 C -0.128 4.128 23 C -0.156 4.156 24 C 0.102 3.898 25 H 0.058 0.942 26 O -0.562 6.562 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.024 0.976 30 H 0.081 0.919 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.031 0.969 39 H 0.262 0.738 40 H 0.041 0.959 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.129 -22.943 5.881 24.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.270 5.270 3 C -0.056 4.056 4 C -0.174 4.174 5 C 0.290 3.710 6 O -0.424 6.424 7 N -0.336 5.336 8 C -0.058 4.058 9 C 0.125 3.875 10 C -0.562 4.562 11 H 0.076 0.924 12 C -0.142 4.142 13 N -0.535 5.535 14 Si 0.726 3.274 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.049 4.049 19 C -0.103 4.103 20 H 0.100 0.900 21 C -0.140 4.140 22 C -0.165 4.165 23 C -0.194 4.194 24 C 0.043 3.957 25 H 0.076 0.924 26 O -0.367 6.367 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.043 0.957 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.093 0.907 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.991 -22.413 5.513 23.615 hybrid contribution 1.089 0.247 0.577 1.257 sum -3.902 -22.167 6.090 23.317 Atomic orbital electron populations 1.22403 0.87818 1.01279 1.00963 1.61983 1.07455 1.14106 1.43475 1.21853 1.01040 0.86703 0.96033 1.21639 1.01855 0.94115 0.99827 1.20338 0.80659 0.86927 0.83042 1.90659 1.41536 1.75628 1.34600 1.48154 1.53812 1.16172 1.15508 1.21610 0.95431 0.99444 0.89267 1.19294 0.93766 0.75729 0.98713 1.21483 1.00173 0.93728 1.40854 0.92431 1.24946 0.98300 0.95386 0.95601 1.69943 1.37812 0.98433 1.47336 0.86443 0.84312 0.78012 0.78661 1.19794 1.20976 1.20887 1.21805 0.94596 0.97505 0.90974 1.21845 0.96883 0.98429 0.93094 0.89964 1.22262 0.98228 0.95770 0.97787 1.22474 0.99465 0.99797 0.94812 1.23104 1.01420 0.97677 0.97207 1.22543 0.90442 0.94792 0.87969 0.92416 1.86574 1.41142 1.82094 1.26925 0.91280 0.91818 0.95720 0.90074 0.94129 0.89852 0.88861 0.93232 0.92568 0.91545 0.93924 0.95088 0.92815 0.94047 0.90810 0.91352 0.91043 0.91415 0.91528 0.91767 0.90743 0.78049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.23 60.07 0.55 0.81 16 2 N -0.55 -6.77 4.49 -242.92 -1.09 -7.86 16 3 C 0.07 1.08 4.07 -3.82 -0.02 1.07 16 4 C -0.13 -2.06 4.17 -27.88 -0.12 -2.17 16 5 C 0.50 10.73 7.67 -10.99 -0.08 10.64 16 6 O -0.55 -14.04 15.56 5.56 0.09 -13.96 16 7 N -0.60 -13.16 2.86 -182.95 -0.52 -13.69 16 8 C 0.09 1.40 10.29 59.85 0.62 2.02 16 9 C 0.24 6.56 5.20 -5.19 -0.03 6.53 16 10 C -0.52 -15.20 9.39 -34.44 -0.32 -15.52 16 11 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 14 Si 0.90 22.20 29.54 -169.99 -5.02 17.17 16 15 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 C 0.08 0.93 3.32 -3.82 -0.01 0.92 16 19 C -0.08 -0.92 2.99 -89.50 -0.27 -1.19 16 20 H 0.08 1.03 6.69 -51.93 -0.35 0.68 16 21 C -0.10 -1.01 6.17 -25.07 -0.15 -1.17 16 22 C -0.13 -1.05 6.91 -24.74 -0.17 -1.22 16 23 C -0.16 -1.20 6.55 -25.07 -0.16 -1.36 16 24 C 0.10 0.95 4.24 -25.61 -0.11 0.84 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 O -0.56 -5.19 11.43 -35.23 -0.40 -5.59 16 27 H 0.07 0.69 6.73 -51.93 -0.35 0.34 16 28 H 0.06 0.59 7.85 -51.93 -0.41 0.18 16 29 H 0.02 0.27 8.07 -51.93 -0.42 -0.15 16 30 H 0.08 1.34 6.54 -51.93 -0.34 1.00 16 31 H 0.04 0.67 8.03 -51.93 -0.42 0.25 16 32 H 0.08 1.10 5.93 -51.93 -0.31 0.79 16 33 H 0.09 1.34 8.11 -51.93 -0.42 0.92 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.71 6.44 -51.93 -0.33 0.38 16 36 H 0.07 1.03 7.89 -51.93 -0.41 0.62 16 37 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 38 H 0.03 0.84 7.89 -51.93 -0.41 0.43 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.04 0.56 7.55 -51.93 -0.39 0.17 16 41 H 0.07 0.85 7.50 -51.93 -0.39 0.46 16 42 H 0.07 0.68 7.78 -51.93 -0.40 0.28 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 48 H 0.37 1.91 9.11 45.56 0.42 2.32 16 LS Contribution 376.73 15.07 5.68 5.68 Total: -1.00 -34.18 376.73 -8.73 -42.91 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.82 Total: -0.16 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -0.37 Total: 1.82 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -0.88 Total: -47.88 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.32 Total: -19.55 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.18 -8.73 -42.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092807607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.841 kcal (2) G-P(sol) polarization free energy of solvation -34.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds