Wall clock time and date at job start Tue Mar 31 2020 04:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 110.99844 * 2 1 4 4 C 1.53001 * 109.47333 * 293.95739 * 3 2 1 5 5 C 1.50704 * 109.47403 * 180.02562 * 4 3 2 6 6 O 1.21280 * 119.99425 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00209 * 180.02562 * 5 4 3 8 8 C 1.46501 * 119.99857 * 359.97438 * 7 5 4 9 9 C 1.46499 * 120.00013 * 179.97438 * 7 5 4 10 10 C 1.50703 * 109.46957 * 89.99966 * 9 7 5 11 11 H 1.07999 * 120.00236 * 359.97438 * 10 9 7 12 12 C 1.37879 * 119.99790 * 179.72541 * 10 9 7 13 13 N 1.31508 * 119.99985 * 0.27423 * 12 10 9 14 14 Si 1.86801 * 119.99817 * 180.27435 * 12 10 9 15 15 H 1.48502 * 109.47060 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47137 * 119.99960 * 14 12 10 17 17 H 1.48497 * 109.47010 * 239.99904 * 14 12 10 18 18 C 1.46896 * 111.00296 * 123.95736 * 2 1 3 19 19 C 1.53005 * 109.46895 * 160.25605 * 18 2 1 20 20 H 1.09004 * 110.01775 * 54.63449 * 19 18 2 21 21 C 1.54265 * 110.03390 * 293.18959 * 19 18 2 22 22 C 1.54888 * 104.19541 * 217.10556 * 21 19 18 23 23 C 1.54888 * 102.74906 * 37.94361 * 22 21 19 24 24 C 1.53880 * 110.02975 * 176.02124 * 19 18 2 25 25 H 1.08994 * 110.03365 * 238.56846 * 24 19 18 26 26 O 1.42898 * 110.03408 * 0.02562 * 24 19 18 27 27 H 1.08994 * 109.47452 * 65.35605 * 1 2 3 28 28 H 1.09006 * 109.46911 * 185.35893 * 1 2 3 29 29 H 1.08998 * 109.46425 * 305.35233 * 1 2 3 30 30 H 1.09001 * 109.47166 * 173.96037 * 3 2 1 31 31 H 1.08991 * 109.47375 * 53.95958 * 3 2 1 32 32 H 1.09001 * 109.46751 * 60.00043 * 4 3 2 33 33 H 1.09002 * 109.46894 * 299.99976 * 4 3 2 34 34 H 1.08993 * 109.47389 * 270.00314 * 8 7 5 35 35 H 1.09003 * 109.46852 * 30.00588 * 8 7 5 36 36 H 1.09003 * 109.47010 * 150.00299 * 8 7 5 37 37 H 1.09003 * 109.47005 * 329.99954 * 9 7 5 38 38 H 1.08996 * 109.47389 * 209.99704 * 9 7 5 39 39 H 0.97001 * 120.00276 * 180.02562 * 13 12 10 40 40 H 1.08993 * 109.47201 * 280.25601 * 18 2 1 41 41 H 1.09003 * 109.47304 * 40.26151 * 18 2 1 42 42 H 1.08995 * 110.48716 * 335.78849 * 21 19 18 43 43 H 1.09001 * 110.48255 * 98.43134 * 21 19 18 44 44 H 1.09001 * 110.75694 * 279.62907 * 22 21 19 45 45 H 1.09002 * 110.75770 * 156.25619 * 22 21 19 46 46 H 1.09003 * 110.48456 * 203.37594 * 23 22 21 47 47 H 1.09004 * 110.59838 * 80.79193 * 23 22 21 48 48 H 0.96692 * 114.00195 * 179.97438 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6313 2.0575 -1.3182 5 6 2.1719 3.4643 -1.3185 6 8 2.7873 3.8775 -0.3586 7 7 1.9706 4.2634 -2.3849 8 6 1.2267 3.7643 -3.5442 9 6 2.4956 5.6310 -2.3849 10 6 3.8876 5.6347 -2.9623 11 1 4.3365 4.7107 -3.2956 12 6 4.5862 6.8186 -3.0699 13 7 4.0398 7.9437 -2.6637 14 14 6.3087 6.8242 -3.7927 15 1 6.6911 5.4402 -4.1714 16 1 6.3372 7.6923 -4.9973 17 1 7.2667 7.3449 -2.7847 18 6 1.9955 -0.7660 1.1375 19 6 3.4458 -1.1643 0.8565 20 1 4.0362 -0.2796 0.6179 21 6 3.5009 -2.1689 -0.3129 22 6 4.6322 -3.1503 0.0824 23 6 4.4386 -3.2967 1.6121 24 6 4.0421 -1.8814 2.0805 25 1 4.9222 -1.3453 2.4353 26 8 3.0667 -1.9661 3.1214 27 1 -0.3634 0.4285 -0.9340 28 1 -0.3633 -1.0232 0.0960 29 1 -0.3632 0.5946 0.8382 30 1 3.0797 1.3444 0.1081 31 1 1.5612 1.9273 0.8309 32 1 0.5470 2.0845 -1.4263 33 1 2.0657 1.5016 -2.1492 34 1 1.9187 3.3040 -4.2493 35 1 0.4965 3.0245 -3.2162 36 1 0.7113 4.5931 -4.0295 37 1 2.5252 6.0089 -1.3629 38 1 1.8500 6.2681 -2.9893 39 1 4.5311 8.7766 -2.7398 40 1 1.9549 -0.1534 2.0380 41 1 1.3936 -1.6634 1.2810 42 1 2.5525 -2.6978 -0.4065 43 1 3.7472 -1.6577 -1.2436 44 1 5.6097 -2.7245 -0.1443 45 1 4.5027 -4.1105 -0.4170 46 1 5.3692 -3.6087 2.0862 47 1 3.6425 -4.0083 1.8315 48 1 3.3822 -2.4088 3.9210 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092807607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:38 Heat of formation + Delta-G solvation = -118.868597 kcal Electronic energy + Delta-G solvation = -24966.765125 eV Core-core repulsion = 21441.094288 eV Total energy + Delta-G solvation = -3525.670836 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.81261 -40.15083 -38.05918 -36.58036 -35.81865 -34.75501 -32.64596 -30.84742 -29.65785 -28.46081 -27.42743 -26.99788 -25.76723 -24.19482 -22.23668 -21.61460 -20.42240 -19.93937 -18.72391 -18.41240 -17.79092 -17.11750 -17.05080 -16.62138 -16.18983 -15.86861 -15.61145 -15.40087 -15.12158 -14.93048 -14.49331 -14.28500 -14.03381 -13.79182 -13.57464 -13.45399 -13.26640 -13.17654 -12.90007 -12.78591 -12.68701 -12.59853 -12.43102 -12.21892 -12.14869 -11.93657 -11.86616 -11.68592 -11.57213 -11.42174 -11.35742 -10.72527 -10.66016 -10.60379 -9.42834 -9.29477 -8.23562 -6.38548 1.35391 1.37782 1.49951 1.83675 2.29059 2.42059 2.98492 3.05780 3.36923 3.67282 3.73247 3.86155 3.91090 4.04555 4.12394 4.29341 4.40554 4.43084 4.49079 4.52642 4.59916 4.62785 4.69299 4.72087 4.78105 4.83579 4.89993 4.94235 4.94783 5.01038 5.03552 5.06607 5.08794 5.10609 5.21146 5.22903 5.35654 5.37461 5.52407 5.55944 5.83927 6.04067 6.05360 6.15956 6.68737 6.78933 6.94027 7.27214 7.48324 8.83779 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.016837 B = 0.003199 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.640229 B = 8751.155262 C = 9579.967602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.540 5.540 3 C 0.081 3.919 4 C -0.113 4.113 5 C 0.494 3.506 6 O -0.603 6.603 7 N -0.611 5.611 8 C 0.080 3.920 9 C 0.257 3.743 10 C -0.543 4.543 11 H 0.052 0.948 12 C 0.005 3.995 13 N -0.929 5.929 14 Si 0.969 3.031 15 H -0.267 1.267 16 H -0.267 1.267 17 H -0.281 1.281 18 C 0.086 3.914 19 C -0.090 4.090 20 H 0.058 0.942 21 C -0.098 4.098 22 C -0.126 4.126 23 C -0.146 4.146 24 C 0.102 3.898 25 H 0.054 0.946 26 O -0.577 6.577 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.018 0.982 30 H 0.058 0.942 31 H 0.019 0.981 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.070 0.930 37 H -0.005 1.005 38 H 0.025 0.975 39 H 0.267 0.733 40 H 0.019 0.981 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.348 -25.576 4.591 26.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.263 5.263 3 C -0.048 4.048 4 C -0.153 4.153 5 C 0.283 3.717 6 O -0.485 6.485 7 N -0.342 5.342 8 C -0.061 4.061 9 C 0.136 3.864 10 C -0.581 4.581 11 H 0.071 0.929 12 C -0.193 4.193 13 N -0.569 5.569 14 Si 0.793 3.207 15 H -0.191 1.191 16 H -0.192 1.192 17 H -0.207 1.207 18 C -0.042 4.042 19 C -0.109 4.109 20 H 0.076 0.924 21 C -0.136 4.136 22 C -0.164 4.164 23 C -0.184 4.184 24 C 0.042 3.958 25 H 0.072 0.928 26 O -0.385 6.385 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.089 0.911 37 H 0.014 0.986 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.038 0.962 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -5.245 -25.087 4.200 25.971 hybrid contribution 1.091 1.077 1.033 1.848 sum -4.154 -24.010 5.233 24.922 Atomic orbital electron populations 1.22541 0.86294 1.02591 1.01437 1.62028 1.08766 1.11993 1.43561 1.21635 0.99732 0.88104 0.95282 1.21546 1.03520 0.89755 1.00482 1.21406 0.79676 0.88827 0.81828 1.90629 1.44064 1.77103 1.36673 1.48200 1.54028 1.14468 1.17545 1.21931 0.96002 1.00646 0.87571 1.18781 0.93472 0.78717 0.95447 1.21741 1.01332 0.93763 1.41279 0.92928 1.25893 1.02733 0.94903 0.95797 1.70058 1.39666 0.99141 1.48070 0.85341 0.78631 0.78478 0.78200 1.19092 1.19239 1.20717 1.21763 0.95373 0.97166 0.89873 1.21864 0.96018 0.98205 0.94797 0.92386 1.22201 0.99067 0.95673 0.96664 1.22480 0.98643 0.99900 0.95342 1.23032 1.02269 0.96403 0.96692 1.22494 0.90070 0.95756 0.87466 0.92766 1.86522 1.41496 1.82624 1.27857 0.89884 0.89930 0.96349 0.92325 0.96319 0.86508 0.86766 0.92365 0.88088 0.91137 0.98638 0.95749 0.92377 0.96224 0.89822 0.91051 0.92083 0.91611 0.90155 0.90292 0.90196 0.75987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.23 127.69 1.18 1.54 16 2 N -0.54 -12.73 4.49 -922.47 -4.14 -16.87 16 3 C 0.08 2.46 4.07 86.30 0.35 2.81 16 4 C -0.11 -3.30 4.17 29.85 0.12 -3.17 16 5 C 0.49 21.27 7.67 87.66 0.67 21.94 16 6 O -0.60 -32.58 15.56 -3.03 -0.05 -32.63 16 7 N -0.61 -26.74 2.86 -851.13 -2.43 -29.17 16 8 C 0.08 2.43 10.29 127.77 1.31 3.74 16 9 C 0.26 14.34 5.20 85.63 0.45 14.79 16 10 C -0.54 -32.19 9.39 25.60 0.24 -31.95 16 11 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 12 C 0.01 0.32 5.46 84.66 0.46 0.78 16 13 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 14 Si 0.97 45.76 29.54 68.60 2.03 47.78 16 15 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 18 C 0.09 2.00 3.32 86.31 0.29 2.28 16 19 C -0.09 -1.96 2.99 -10.07 -0.03 -1.99 16 20 H 0.06 1.53 6.69 -2.38 -0.02 1.52 16 21 C -0.10 -1.82 6.17 31.67 0.20 -1.62 16 22 C -0.13 -1.84 6.91 31.88 0.22 -1.62 16 23 C -0.15 -1.94 6.55 31.67 0.21 -1.73 16 24 C 0.10 1.81 4.24 31.32 0.13 1.95 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 O -0.58 -10.12 11.43 -148.98 -1.70 -11.82 16 27 H 0.08 1.34 6.73 -2.39 -0.02 1.32 16 28 H 0.08 1.27 7.85 -2.38 -0.02 1.26 16 29 H 0.02 0.37 8.07 -2.39 -0.02 0.35 16 30 H 0.06 2.04 6.54 -2.39 -0.02 2.02 16 31 H 0.02 0.64 8.03 -2.39 -0.02 0.62 16 32 H 0.12 2.66 5.93 -2.39 -0.01 2.65 16 33 H 0.11 2.95 8.11 -2.39 -0.02 2.93 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.10 2.14 6.44 -2.39 -0.02 2.12 16 36 H 0.07 2.07 7.89 -2.39 -0.02 2.05 16 37 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 38 H 0.02 1.37 7.89 -2.39 -0.02 1.35 16 39 H 0.27 15.37 8.31 -92.71 -0.77 14.59 16 40 H 0.02 0.54 7.55 -2.39 -0.02 0.52 16 41 H 0.08 1.79 7.50 -2.39 -0.02 1.77 16 42 H 0.07 1.27 7.78 -2.39 -0.02 1.25 16 43 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 48 H 0.39 3.48 9.11 -74.06 -0.67 2.80 16 Total: -1.00 -77.67 376.73 0.05 -77.62 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.25 Total: 14.38 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 5.80 Total: 7.75 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -6.29 Total: -103.09 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -1.75 Total: -44.45 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -77.67 0.05 -77.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092807607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.248 kcal (2) G-P(sol) polarization free energy of solvation -77.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds