Wall clock time and date at job start Tue Mar 31 2020 05:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 119.99901 * 2 1 4 4 H 1.48501 * 109.46866 * 239.99378 * 3 2 1 5 5 H 1.48494 * 109.46940 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47073 * 119.99620 * 3 2 1 7 7 C 1.38954 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00442 * 180.02562 * 7 2 1 9 9 N 1.37105 * 119.99440 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99338 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00786 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99973 * 180.02562 * 10 9 7 13 13 H 1.08998 * 115.54512 * 325.58140 * 12 10 9 14 14 C 1.52993 * 117.50081 * 111.25143 * 12 10 9 15 15 C 1.52995 * 117.50181 * 179.91378 * 12 10 9 16 16 H 1.08999 * 117.49900 * 145.01759 * 15 12 10 17 17 C 1.50707 * 117.49782 * 0.02562 * 15 12 10 18 18 C 1.38245 * 119.98904 * 299.99757 * 17 15 12 19 19 C 1.38197 * 120.02010 * 179.97438 * 18 17 15 20 20 C 1.38375 * 120.01690 * 0.02562 * 19 18 17 21 21 Cl 1.73603 * 120.00610 * 179.97438 * 20 19 18 22 22 C 1.38305 * 119.98651 * 359.97438 * 20 19 18 23 23 C 1.38336 * 119.99297 * 119.72544 * 17 15 12 24 24 Cl 1.73598 * 120.00798 * 0.02562 * 23 17 15 25 25 H 0.96994 * 120.00284 * 0.02562 * 1 2 3 26 26 H 0.96994 * 120.00421 * 0.02562 * 9 7 2 27 27 H 1.08998 * 117.50372 * 214.98309 * 14 12 10 28 28 H 1.09006 * 117.50059 * 359.97438 * 14 12 10 29 29 H 1.08001 * 119.98908 * 359.95637 * 18 17 15 30 30 H 1.08005 * 119.99083 * 179.97438 * 19 18 17 31 31 H 1.08003 * 120.01264 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2831 2.7464 -0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2438 -4.8630 0.0000 13 1 0.3060 -4.8646 0.5555 14 6 1.3171 -5.7205 -1.2650 15 6 2.0658 -6.1533 -0.0021 16 1 1.6687 -7.0040 0.5518 17 6 3.5672 -6.0219 -0.0027 18 6 4.2028 -5.3640 -1.0392 19 6 5.5794 -5.2427 -1.0402 20 6 6.3224 -5.7801 -0.0039 21 17 8.0518 -5.6280 -0.0058 22 6 5.6871 -6.4383 1.0333 23 6 4.3084 -6.5547 1.0367 24 17 3.5095 -7.3752 2.3414 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3907 -0.0002 27 1 0.4276 -6.2866 -1.5416 28 1 1.9099 -5.3404 -2.0970 29 1 3.6233 -4.9450 -1.8486 30 1 6.0755 -4.7290 -1.8504 31 1 6.2665 -6.8576 1.8426 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098009525.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:33 Heat of formation + Delta-G solvation = 3.071894 kcal Electronic energy + Delta-G solvation = -19290.951641 eV Core-core repulsion = 16010.935830 eV Total energy + Delta-G solvation = -3280.015811 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 299.022 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.95431 -38.20277 -36.59043 -36.18480 -35.59897 -33.87877 -31.33944 -30.55072 -30.09245 -25.69487 -23.83824 -22.98157 -22.38892 -20.44739 -18.97242 -17.92658 -17.28931 -16.38964 -15.49061 -15.04044 -14.66234 -14.37247 -14.00954 -13.78311 -13.62922 -13.52927 -13.14774 -12.41274 -12.16786 -11.92998 -11.71605 -11.62824 -11.26641 -11.13143 -10.98018 -10.69947 -10.60935 -10.47867 -10.33074 -10.18766 -10.10607 -9.54139 -8.86089 -8.37679 -8.02099 -7.69077 -6.48784 -3.88647 1.31456 1.51827 2.06655 2.54327 3.12649 3.22160 3.26262 3.44321 3.92847 4.10217 4.31563 4.67854 4.86179 4.99422 5.13281 5.20679 5.33042 5.38955 5.51884 5.61225 5.78252 5.83636 6.02418 6.03826 6.20808 6.29251 6.38404 6.49798 6.74758 6.93377 7.48499 7.98750 8.53486 9.10352 9.47684 9.98942 10.68342 Molecular weight = 299.02amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.005018 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.799612 B = 5578.997261 C = 6750.823920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.550 5.550 10 C 0.459 3.541 11 O -0.579 6.579 12 C -0.152 4.152 13 H 0.116 0.884 14 C -0.154 4.154 15 C -0.101 4.101 16 H 0.119 0.881 17 C -0.013 4.013 18 C -0.012 4.012 19 C -0.115 4.115 20 C -0.024 4.024 21 Cl -0.079 7.079 22 C -0.119 4.119 23 C -0.019 4.019 24 Cl -0.073 7.073 25 H 0.273 0.727 26 H 0.393 0.607 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.021 -13.333 -1.253 14.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.430 4.430 8 H 0.122 0.878 9 N -0.184 5.184 10 C 0.245 3.755 11 O -0.465 6.465 12 C -0.174 4.174 13 H 0.134 0.866 14 C -0.192 4.192 15 C -0.119 4.119 16 H 0.137 0.863 17 C -0.014 4.014 18 C -0.030 4.030 19 C -0.134 4.134 20 C -0.051 4.051 21 Cl -0.050 7.050 22 C -0.139 4.139 23 C -0.045 4.045 24 Cl -0.045 7.045 25 H 0.083 0.917 26 H 0.226 0.774 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.151 0.849 30 H 0.148 0.852 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.753 -13.180 -1.125 14.425 hybrid contribution -0.243 1.031 0.337 1.111 sum 5.510 -12.149 -0.788 13.363 Atomic orbital electron populations 1.69601 1.05977 1.28439 1.49797 1.25278 0.95610 0.99800 0.97047 0.85929 0.78820 0.80431 0.79149 1.19840 1.20899 1.19839 1.19674 0.93369 0.82153 1.47771 0.87848 1.41868 1.09296 1.04503 1.62736 1.18971 0.87707 0.83829 0.85014 1.90545 1.13258 1.86173 1.56522 1.22317 1.00928 0.91558 1.02576 0.86647 1.23095 1.02273 1.02273 0.91543 1.21007 0.89790 0.98435 1.02703 0.86307 1.18729 0.93454 0.96258 0.92988 1.20650 0.92854 0.92240 0.97301 1.20905 0.93874 1.00382 0.98255 1.20544 0.83981 1.03054 0.97515 1.98341 1.11290 1.96922 1.98493 1.20550 0.92405 1.02006 0.98917 1.20318 0.91762 1.01470 0.90994 1.98330 1.80245 1.77500 1.48384 0.91690 0.77362 0.87902 0.88079 0.84919 0.85168 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.90 13.05 55.50 0.72 -23.18 16 2 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.08 9.68 -14.93 -0.14 -8.23 16 8 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 9 N -0.55 -13.41 5.29 -10.96 -0.06 -13.47 16 10 C 0.46 10.14 7.42 -10.98 -0.08 10.05 16 11 O -0.58 -14.00 11.28 5.54 0.06 -13.94 16 12 C -0.15 -2.56 6.19 -91.77 -0.57 -3.13 16 13 H 0.12 1.74 8.14 -51.93 -0.42 1.32 16 14 C -0.15 -2.10 9.58 -26.70 -0.26 -2.35 16 15 C -0.10 -1.51 5.55 -91.74 -0.51 -2.02 16 16 H 0.12 1.57 7.17 -51.93 -0.37 1.20 16 17 C -0.01 -0.22 4.37 -104.58 -0.46 -0.68 16 18 C -0.01 -0.20 6.17 -39.59 -0.24 -0.44 16 19 C -0.12 -1.83 9.83 -39.55 -0.39 -2.22 16 20 C -0.02 -0.37 6.32 -39.51 -0.25 -0.62 16 21 Cl -0.08 -1.08 28.96 -51.86 -1.50 -2.58 16 22 C -0.12 -1.82 9.61 -39.51 -0.38 -2.20 16 23 C -0.02 -0.30 6.31 -39.50 -0.25 -0.54 16 24 Cl -0.07 -1.04 27.42 -51.86 -1.42 -2.46 16 25 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 27 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.10 1.41 6.19 -51.93 -0.32 1.09 16 29 H 0.13 2.19 5.78 -52.49 -0.30 1.88 16 30 H 0.13 1.85 8.06 -52.48 -0.42 1.43 16 31 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 298.30 15.07 4.50 4.50 Total: -1.00 -28.44 298.30 -8.87 -37.31 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -2.52 Total: 9.95 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -3.62 Total: -11.81 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.67 Total: -36.65 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.06 Total: -13.94 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -2.92 Total: -5.04 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.44 -8.87 -37.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098009525.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.384 kcal (2) G-P(sol) polarization free energy of solvation -28.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds