Wall clock time and date at job start Tue Mar 31 2020 05:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 119.99901 * 2 1 4 4 H 1.48501 * 109.46866 * 239.99378 * 3 2 1 5 5 H 1.48494 * 109.46940 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47073 * 119.99620 * 3 2 1 7 7 C 1.38954 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00442 * 180.02562 * 7 2 1 9 9 N 1.37105 * 119.99440 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99338 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00786 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99973 * 180.02562 * 10 9 7 13 13 H 1.08998 * 115.54512 * 325.58140 * 12 10 9 14 14 C 1.52993 * 117.50081 * 111.25143 * 12 10 9 15 15 C 1.52995 * 117.50181 * 179.91378 * 12 10 9 16 16 H 1.08999 * 117.49900 * 145.01759 * 15 12 10 17 17 C 1.50707 * 117.49782 * 0.02562 * 15 12 10 18 18 C 1.38245 * 119.98904 * 299.99757 * 17 15 12 19 19 C 1.38197 * 120.02010 * 179.97438 * 18 17 15 20 20 C 1.38375 * 120.01690 * 0.02562 * 19 18 17 21 21 Cl 1.73603 * 120.00610 * 179.97438 * 20 19 18 22 22 C 1.38305 * 119.98651 * 359.97438 * 20 19 18 23 23 C 1.38336 * 119.99297 * 119.72544 * 17 15 12 24 24 Cl 1.73598 * 120.00798 * 0.02562 * 23 17 15 25 25 H 0.96994 * 120.00284 * 0.02562 * 1 2 3 26 26 H 0.96994 * 120.00421 * 0.02562 * 9 7 2 27 27 H 1.08998 * 117.50372 * 214.98309 * 14 12 10 28 28 H 1.09006 * 117.50059 * 359.97438 * 14 12 10 29 29 H 1.08001 * 119.98908 * 359.95637 * 18 17 15 30 30 H 1.08005 * 119.99083 * 179.97438 * 19 18 17 31 31 H 1.08003 * 120.01264 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2831 2.7464 -0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2438 -4.8630 0.0000 13 1 0.3060 -4.8646 0.5555 14 6 1.3171 -5.7205 -1.2650 15 6 2.0658 -6.1533 -0.0021 16 1 1.6687 -7.0040 0.5518 17 6 3.5672 -6.0219 -0.0027 18 6 4.2028 -5.3640 -1.0392 19 6 5.5794 -5.2427 -1.0402 20 6 6.3224 -5.7801 -0.0039 21 17 8.0518 -5.6280 -0.0058 22 6 5.6871 -6.4383 1.0333 23 6 4.3084 -6.5547 1.0367 24 17 3.5095 -7.3752 2.3414 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3907 -0.0002 27 1 0.4276 -6.2866 -1.5416 28 1 1.9099 -5.3404 -2.0970 29 1 3.6233 -4.9450 -1.8486 30 1 6.0755 -4.7290 -1.8504 31 1 6.2665 -6.8576 1.8426 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098009525.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:32 Heat of formation + Delta-G solvation = -11.788637 kcal Electronic energy + Delta-G solvation = -19291.596042 eV Core-core repulsion = 16010.935830 eV Total energy + Delta-G solvation = -3280.660212 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 299.022 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.30231 -39.68711 -37.81626 -37.45413 -36.86662 -35.74940 -33.23364 -31.77565 -31.34725 -27.52841 -25.06815 -24.49093 -23.64003 -21.68374 -20.60762 -19.73101 -18.68361 -17.75794 -16.87366 -16.59775 -16.13555 -15.82722 -15.65122 -15.14107 -14.94671 -14.85911 -14.70246 -13.91273 -13.51302 -13.30216 -13.12598 -13.00797 -12.85914 -12.42510 -12.41723 -12.24696 -12.07399 -11.87186 -11.76529 -11.55238 -11.39568 -11.23675 -10.38927 -9.99197 -9.60195 -9.09976 -8.45097 -5.92008 0.08231 0.28697 0.88342 1.35237 1.38059 1.41087 1.51052 1.93472 2.29129 2.54871 2.99711 3.15975 3.31683 3.65757 3.78316 3.99459 4.03878 4.09117 4.28277 4.37654 4.54387 4.58510 4.77142 4.88769 4.92207 5.06490 5.14157 5.27051 5.42964 5.52335 5.71259 6.02429 6.62164 7.14930 7.61156 8.16209 8.71998 Molecular weight = 299.02amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.005018 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.799612 B = 5578.997261 C = 6750.823920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.987 3.013 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.326 4.326 8 H 0.081 0.919 9 N -0.568 5.568 10 C 0.462 3.538 11 O -0.602 6.602 12 C -0.173 4.173 13 H 0.135 0.865 14 C -0.128 4.128 15 C -0.096 4.096 16 H 0.141 0.859 17 C -0.029 4.029 18 C -0.028 4.028 19 C -0.125 4.125 20 C -0.031 4.031 21 Cl -0.064 7.064 22 C -0.122 4.122 23 C -0.029 4.029 24 Cl -0.058 7.058 25 H 0.276 0.724 26 H 0.394 0.606 27 H 0.142 0.858 28 H 0.095 0.905 29 H 0.128 0.872 30 H 0.140 0.860 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.904 -14.349 -1.219 15.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.811 3.189 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.456 4.456 8 H 0.099 0.901 9 N -0.204 5.204 10 C 0.250 3.750 11 O -0.488 6.488 12 C -0.195 4.195 13 H 0.153 0.847 14 C -0.165 4.165 15 C -0.114 4.114 16 H 0.158 0.842 17 C -0.030 4.030 18 C -0.046 4.046 19 C -0.144 4.144 20 C -0.058 4.058 21 Cl -0.036 7.036 22 C -0.142 4.142 23 C -0.056 4.056 24 Cl -0.030 7.030 25 H 0.086 0.914 26 H 0.228 0.772 27 H 0.160 0.840 28 H 0.113 0.887 29 H 0.146 0.854 30 H 0.158 0.842 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.639 -14.220 -1.093 15.337 hybrid contribution -0.100 1.214 0.339 1.264 sum 5.539 -13.007 -0.754 14.157 Atomic orbital electron populations 1.69664 1.06798 1.29203 1.50487 1.25964 0.96429 1.02248 0.96541 0.85073 0.77813 0.77136 0.78860 1.19612 1.19677 1.20048 1.19606 0.92657 0.83904 1.49424 0.90116 1.41938 1.09256 1.04645 1.64539 1.19910 0.87795 0.85006 0.82287 1.90540 1.14664 1.87057 1.56559 1.22228 1.01675 0.89308 1.06245 0.84675 1.23273 1.03076 1.00037 0.90151 1.21153 0.88886 0.97597 1.03787 0.84173 1.18975 0.94504 0.96444 0.93121 1.20730 0.93322 0.92881 0.97673 1.21110 0.93958 1.00479 0.98866 1.20660 0.84893 1.02859 0.97409 1.98342 1.09901 1.96852 1.98456 1.20812 0.92525 1.01592 0.99224 1.20495 0.92204 1.01582 0.91358 1.98329 1.79987 1.77099 1.47539 0.91425 0.77239 0.83984 0.88667 0.85411 0.84243 0.83134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.24 13.05 21.66 0.28 -48.96 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 3 Si 0.99 42.62 29.55 68.60 2.03 44.65 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 6 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.33 -17.98 9.68 84.04 0.81 -17.16 16 8 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 9 N -0.57 -28.16 5.29 -306.97 -1.62 -29.78 16 10 C 0.46 20.47 7.42 87.66 0.65 21.12 16 11 O -0.60 -29.45 11.28 -3.08 -0.03 -29.48 16 12 C -0.17 -5.55 6.19 -11.54 -0.07 -5.62 16 13 H 0.14 3.78 8.14 -2.39 -0.02 3.76 16 14 C -0.13 -3.15 9.58 30.62 0.29 -2.85 16 15 C -0.10 -2.66 5.55 -11.52 -0.06 -2.72 16 16 H 0.14 3.26 7.17 -2.39 -0.02 3.25 16 17 C -0.03 -0.94 4.37 -19.84 -0.09 -1.03 16 18 C -0.03 -0.91 6.17 22.26 0.14 -0.78 16 19 C -0.13 -3.95 9.83 22.29 0.22 -3.73 16 20 C -0.03 -0.94 6.32 22.32 0.14 -0.80 16 21 Cl -0.06 -1.68 28.96 -2.72 -0.08 -1.76 16 22 C -0.12 -3.58 9.61 22.31 0.21 -3.36 16 23 C -0.03 -0.90 6.31 22.32 0.14 -0.76 16 24 Cl -0.06 -1.54 27.42 -2.72 -0.07 -1.62 16 25 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 26 H 0.39 18.91 7.90 -92.71 -0.73 18.18 16 27 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.10 2.49 6.19 -2.38 -0.01 2.47 16 29 H 0.13 4.24 5.78 -2.91 -0.02 4.23 16 30 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 31 H 0.15 3.77 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -61.17 298.30 3.82 -57.35 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.46 Total: 27.45 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 2.86 Total: -17.85 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -1.34 Total: -78.74 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.03 Total: -29.48 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 17 Polarization: -3.22 SS G_CDS: -0.15 Total: -3.38 kcal Total: -61.17 3.82 -57.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098009525.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.559 kcal (2) G-P(sol) polarization free energy of solvation -61.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds