Wall clock time and date at job start Tue Mar 31 2020 04:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 120.00480 * 2 1 4 4 C 1.50697 * 109.47065 * 270.00103 * 3 2 1 5 5 H 1.08005 * 120.00310 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00021 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00001 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00347 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47029 * 89.99831 * 8 6 4 10 10 H 1.48495 * 109.47200 * 210.00104 * 8 6 4 11 11 H 1.48497 * 109.46858 * 330.00156 * 8 6 4 12 12 C 1.34774 * 119.99309 * 180.02562 * 2 1 3 13 13 O 1.21284 * 119.99716 * 180.02562 * 12 2 1 14 14 C 1.50693 * 120.00541 * 359.97438 * 12 2 1 15 15 C 1.53005 * 109.47429 * 180.02562 * 14 12 2 16 16 N 1.46899 * 109.47244 * 179.97438 * 15 14 12 17 17 C 1.48003 * 110.99858 * 66.04818 * 16 15 14 18 18 C 1.50444 * 112.74259 * 84.77974 * 17 16 15 19 19 C 1.54305 * 108.49100 * 93.78633 * 18 17 16 20 20 C 1.45881 * 112.18913 * 281.46298 * 19 18 17 21 21 C 1.54310 * 112.18411 * 61.12011 * 20 19 18 22 22 C 1.47931 * 111.06062 * 194.87215 * 16 15 14 23 23 H 1.09001 * 108.71306 * 312.27189 * 22 16 15 24 24 C 1.53004 * 108.76509 * 70.57448 * 22 16 15 25 25 O 1.42904 * 109.46711 * 68.33353 * 24 22 16 26 26 H 1.08990 * 109.47332 * 270.00468 * 1 2 3 27 27 H 1.09010 * 109.46300 * 30.00105 * 1 2 3 28 28 H 1.08994 * 109.47215 * 149.99281 * 1 2 3 29 29 H 1.09003 * 109.46605 * 29.99886 * 3 2 1 30 30 H 1.08993 * 109.47302 * 149.99564 * 3 2 1 31 31 H 0.97006 * 120.00471 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47288 * 60.00545 * 14 12 2 33 33 H 1.09002 * 109.47563 * 300.00349 * 14 12 2 34 34 H 1.09009 * 109.46741 * 60.00350 * 15 14 12 35 35 H 1.08995 * 109.47307 * 300.00078 * 15 14 12 36 36 H 1.09002 * 108.81209 * 323.96933 * 17 16 15 37 37 H 1.09005 * 108.80871 * 205.58627 * 17 16 15 38 38 H 1.09003 * 109.63501 * 213.48729 * 18 17 16 39 39 H 1.08997 * 109.63211 * 333.88089 * 18 17 16 40 40 H 1.08999 * 108.94228 * 42.16255 * 19 18 17 41 41 H 1.08999 * 108.93939 * 160.85540 * 19 18 17 42 42 H 1.09000 * 108.93972 * 181.81919 * 20 19 18 43 43 H 1.08994 * 108.94102 * 300.42635 * 20 19 18 44 44 H 1.09005 * 109.63098 * 41.17419 * 21 20 19 45 45 H 1.09001 * 109.62838 * 161.76171 * 21 20 19 46 46 H 1.08997 * 109.46855 * 188.33236 * 24 22 16 47 47 H 1.08993 * 109.47230 * 308.33825 * 24 22 16 48 48 H 0.96702 * 113.99850 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1262 2.8778 -1.6727 7 7 3.5527 3.6184 -0.6732 8 14 3.4382 3.4167 -3.4339 9 1 2.3081 4.2591 -3.9014 10 1 4.6982 4.2001 -3.4960 11 1 3.5563 2.2194 -4.3044 12 6 2.1388 -1.1673 -0.0005 13 8 3.3516 -1.1673 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0005 16 7 1.6449 -4.9075 0.0001 17 6 0.8935 -5.0866 -1.2623 18 6 1.7345 -5.6774 -2.3610 19 6 1.5419 -7.2083 -2.3553 20 6 2.3171 -7.8573 -1.3036 21 6 1.9049 -7.3780 0.1041 22 6 2.5346 -6.0349 0.3544 23 1 3.4475 -5.9591 -0.2364 24 6 2.8972 -5.9286 1.8371 25 8 1.7355 -6.1790 2.6306 26 1 -0.3633 0.0001 1.0276 27 1 -0.3632 0.8901 -0.5139 28 1 -0.3633 -0.8899 -0.5139 29 1 1.6085 2.0283 0.5138 30 1 3.1500 1.1383 0.5139 31 1 4.0290 4.4447 -0.8503 32 1 0.7584 -2.5299 -0.8903 33 1 0.7589 -2.5302 0.8897 34 1 3.0061 -3.5776 0.8896 35 1 3.0061 -3.5776 -0.8904 36 1 0.5191 -4.1165 -1.5893 37 1 0.0453 -5.7455 -1.0760 38 1 1.4187 -5.2720 -3.3223 39 1 2.7836 -5.4365 -2.1889 40 1 0.4856 -7.4315 -2.2052 41 1 1.8537 -7.6077 -3.3204 42 1 2.1680 -8.9351 -1.3681 43 1 3.3738 -7.6382 -1.4565 44 1 0.8198 -7.2895 0.1577 45 1 2.2543 -8.0912 0.8506 46 1 3.6661 -6.6631 2.0766 47 1 3.2726 -4.9274 2.0484 48 1 1.8917 -6.1285 3.5836 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133522536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:53 Heat of formation + Delta-G solvation = -85.802353 kcal Electronic energy + Delta-G solvation = -25505.056927 eV Core-core repulsion = 21980.819950 eV Total energy + Delta-G solvation = -3524.236976 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.97823 -38.78464 -36.59497 -35.14200 -34.62795 -32.66646 -32.53288 -30.71410 -27.96230 -27.15737 -26.55237 -25.59254 -23.41803 -23.14855 -21.79769 -20.58848 -19.10739 -18.27531 -17.36879 -16.84366 -16.49364 -16.37436 -15.64568 -15.22749 -15.09797 -14.47685 -14.29635 -14.04712 -14.03157 -13.74695 -13.39261 -13.10592 -12.85888 -12.54294 -12.34570 -12.15024 -12.07374 -11.91999 -11.79725 -11.50110 -11.35190 -11.10082 -10.95558 -10.87746 -10.76635 -10.70341 -10.60492 -10.52498 -10.21981 -10.14325 -9.92425 -9.60504 -8.83731 -8.42380 -8.10606 -7.59494 -6.02899 -4.07593 3.30347 3.36710 3.40499 3.51245 3.61276 4.16842 4.19330 4.46323 4.53553 4.57757 4.74438 4.90944 4.99069 5.12987 5.23331 5.25765 5.30381 5.32549 5.39834 5.42725 5.45157 5.54254 5.60517 5.65350 5.73000 5.77885 5.85491 5.90813 5.96039 5.97675 5.98249 6.05540 6.14691 6.20496 6.21696 6.26558 6.32311 7.08848 7.15306 7.20301 7.47265 7.58285 7.61342 7.93844 8.25731 8.47353 8.92361 9.14863 9.57490 11.05141 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.020361 B = 0.003356 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.828554 B = 8340.042781 C = 8961.928553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.604 5.604 3 C 0.245 3.755 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.504 3.496 13 O -0.547 6.547 14 C -0.133 4.133 15 C 0.073 3.927 16 N -0.538 5.538 17 C 0.056 3.944 18 C -0.152 4.152 19 C -0.116 4.116 20 C -0.124 4.124 21 C -0.106 4.106 22 C 0.097 3.903 23 H 0.052 0.948 24 C 0.080 3.920 25 O -0.557 6.557 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.263 0.737 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.044 0.956 47 H 0.049 0.951 48 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.387 -22.180 2.384 23.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.291 3.709 13 O -0.426 6.426 14 C -0.174 4.174 15 C -0.055 4.055 16 N -0.264 5.264 17 C -0.071 4.071 18 C -0.191 4.191 19 C -0.154 4.154 20 C -0.162 4.162 21 C -0.143 4.143 22 C -0.011 4.011 23 H 0.069 0.931 24 C 0.002 3.998 25 O -0.361 6.361 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -6.251 -22.044 2.181 23.017 hybrid contribution 1.026 0.571 -1.137 1.635 sum -5.224 -21.473 1.044 22.124 Atomic orbital electron populations 1.21628 0.81440 1.02480 1.00430 1.48158 1.06186 1.07878 1.71364 1.19267 0.92550 0.78227 0.97407 1.21443 1.36411 1.06199 0.92352 0.92539 1.24942 0.95392 0.96421 0.97412 1.69935 1.38515 1.14287 1.30705 0.86500 0.77683 0.78565 0.84694 1.20628 1.21075 1.19943 1.20348 0.88068 0.85217 0.77308 1.90653 1.14050 1.87424 1.50458 1.21656 0.99259 0.92505 1.03934 1.21786 0.94652 0.87116 1.01935 1.61671 1.30359 1.01479 1.32844 1.21952 0.96525 1.01365 0.87246 1.21944 1.01355 0.95719 1.00057 1.20541 1.00728 0.95377 0.98707 1.20655 1.00185 1.00052 0.95259 1.21309 1.02327 0.94904 0.95786 1.21307 0.94774 0.91209 0.93765 0.93055 1.22386 0.87147 0.99205 0.91064 1.86569 1.34734 1.94271 1.20495 0.93735 0.90922 0.92412 0.95079 0.93903 0.92739 0.89643 0.88897 0.90278 0.94115 0.90896 0.90921 0.91326 0.91747 0.91971 0.92531 0.92197 0.92439 0.90330 0.91159 0.93814 0.93277 0.78317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 10.24 59.85 0.61 1.99 16 2 N -0.60 -13.12 2.86 -182.96 -0.52 -13.64 16 3 C 0.24 6.55 5.16 -5.20 -0.03 6.52 16 4 C -0.53 -15.16 9.39 -34.44 -0.32 -15.48 16 5 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.50 10.67 7.67 -10.99 -0.08 10.58 16 13 O -0.55 -13.93 15.56 5.55 0.09 -13.84 16 14 C -0.13 -2.05 4.23 -27.88 -0.12 -2.17 16 15 C 0.07 1.08 4.06 -3.82 -0.02 1.06 16 16 N -0.54 -6.65 4.34 -227.97 -0.99 -7.64 16 17 C 0.06 0.62 5.01 -4.49 -0.02 0.60 16 18 C -0.15 -1.55 5.54 -27.32 -0.15 -1.70 16 19 C -0.12 -1.00 5.30 -29.42 -0.16 -1.16 16 20 C -0.12 -1.05 5.30 -29.42 -0.16 -1.21 16 21 C -0.11 -1.01 4.64 -27.32 -0.13 -1.13 16 22 C 0.10 1.07 1.61 -68.42 -0.11 0.96 16 23 H 0.05 0.58 6.49 -51.93 -0.34 0.25 16 24 C 0.08 0.83 6.40 37.16 0.24 1.06 16 25 O -0.56 -5.83 13.08 -35.23 -0.46 -6.29 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.21 8.07 -51.92 -0.42 0.79 16 28 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 29 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.09 1.19 5.48 -51.93 -0.28 0.91 16 33 H 0.09 1.32 8.11 -51.93 -0.42 0.89 16 34 H 0.08 1.24 6.06 -51.92 -0.31 0.92 16 35 H 0.04 0.67 7.60 -51.93 -0.39 0.27 16 36 H 0.07 0.83 5.80 -51.93 -0.30 0.53 16 37 H 0.07 0.76 6.58 -51.93 -0.34 0.42 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.75 6.61 -51.93 -0.34 0.40 16 40 H 0.06 0.52 7.52 -51.93 -0.39 0.13 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.50 7.52 -51.93 -0.39 0.11 16 44 H 0.08 0.84 7.08 -51.93 -0.37 0.47 16 45 H 0.07 0.63 7.71 -51.93 -0.40 0.23 16 46 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.05 0.56 6.22 -51.93 -0.32 0.23 16 48 H 0.37 2.36 9.12 45.56 0.42 2.78 16 LS Contribution 364.72 15.07 5.50 5.50 Total: -1.00 -34.12 364.72 -8.62 -42.74 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.41 Total: 0.74 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -0.54 Total: 1.57 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -0.78 Total: -47.48 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.37 Total: -20.13 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.12 -8.62 -42.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133522536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.058 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds