Wall clock time and date at job start Tue Mar 31 2020 04:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 120.00480 * 2 1 4 4 C 1.50697 * 109.47065 * 270.00103 * 3 2 1 5 5 H 1.08005 * 120.00310 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00021 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00001 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00347 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47029 * 89.99831 * 8 6 4 10 10 H 1.48495 * 109.47200 * 210.00104 * 8 6 4 11 11 H 1.48497 * 109.46858 * 330.00156 * 8 6 4 12 12 C 1.34774 * 119.99309 * 180.02562 * 2 1 3 13 13 O 1.21284 * 119.99716 * 180.02562 * 12 2 1 14 14 C 1.50693 * 120.00541 * 359.97438 * 12 2 1 15 15 C 1.53005 * 109.47429 * 180.02562 * 14 12 2 16 16 N 1.46899 * 109.47244 * 179.97438 * 15 14 12 17 17 C 1.48003 * 110.99858 * 66.04818 * 16 15 14 18 18 C 1.50444 * 112.74259 * 84.77974 * 17 16 15 19 19 C 1.54305 * 108.49100 * 93.78633 * 18 17 16 20 20 C 1.45881 * 112.18913 * 281.46298 * 19 18 17 21 21 C 1.54310 * 112.18411 * 61.12011 * 20 19 18 22 22 C 1.47931 * 111.06062 * 194.87215 * 16 15 14 23 23 H 1.09001 * 108.71306 * 312.27189 * 22 16 15 24 24 C 1.53004 * 108.76509 * 70.57448 * 22 16 15 25 25 O 1.42904 * 109.46711 * 68.33353 * 24 22 16 26 26 H 1.08990 * 109.47332 * 270.00468 * 1 2 3 27 27 H 1.09010 * 109.46300 * 30.00105 * 1 2 3 28 28 H 1.08994 * 109.47215 * 149.99281 * 1 2 3 29 29 H 1.09003 * 109.46605 * 29.99886 * 3 2 1 30 30 H 1.08993 * 109.47302 * 149.99564 * 3 2 1 31 31 H 0.97006 * 120.00471 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47288 * 60.00545 * 14 12 2 33 33 H 1.09002 * 109.47563 * 300.00349 * 14 12 2 34 34 H 1.09009 * 109.46741 * 60.00350 * 15 14 12 35 35 H 1.08995 * 109.47307 * 300.00078 * 15 14 12 36 36 H 1.09002 * 108.81209 * 323.96933 * 17 16 15 37 37 H 1.09005 * 108.80871 * 205.58627 * 17 16 15 38 38 H 1.09003 * 109.63501 * 213.48729 * 18 17 16 39 39 H 1.08997 * 109.63211 * 333.88089 * 18 17 16 40 40 H 1.08999 * 108.94228 * 42.16255 * 19 18 17 41 41 H 1.08999 * 108.93939 * 160.85540 * 19 18 17 42 42 H 1.09000 * 108.93972 * 181.81919 * 20 19 18 43 43 H 1.08994 * 108.94102 * 300.42635 * 20 19 18 44 44 H 1.09005 * 109.63098 * 41.17419 * 21 20 19 45 45 H 1.09001 * 109.62838 * 161.76171 * 21 20 19 46 46 H 1.08997 * 109.46855 * 188.33236 * 24 22 16 47 47 H 1.08993 * 109.47230 * 308.33825 * 24 22 16 48 48 H 0.96702 * 113.99850 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1262 2.8778 -1.6727 7 7 3.5527 3.6184 -0.6732 8 14 3.4382 3.4167 -3.4339 9 1 2.3081 4.2591 -3.9014 10 1 4.6982 4.2001 -3.4960 11 1 3.5563 2.2194 -4.3044 12 6 2.1388 -1.1673 -0.0005 13 8 3.3516 -1.1673 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0005 16 7 1.6449 -4.9075 0.0001 17 6 0.8935 -5.0866 -1.2623 18 6 1.7345 -5.6774 -2.3610 19 6 1.5419 -7.2083 -2.3553 20 6 2.3171 -7.8573 -1.3036 21 6 1.9049 -7.3780 0.1041 22 6 2.5346 -6.0349 0.3544 23 1 3.4475 -5.9591 -0.2364 24 6 2.8972 -5.9286 1.8371 25 8 1.7355 -6.1790 2.6306 26 1 -0.3633 0.0001 1.0276 27 1 -0.3632 0.8901 -0.5139 28 1 -0.3633 -0.8899 -0.5139 29 1 1.6085 2.0283 0.5138 30 1 3.1500 1.1383 0.5139 31 1 4.0290 4.4447 -0.8503 32 1 0.7584 -2.5299 -0.8903 33 1 0.7589 -2.5302 0.8897 34 1 3.0061 -3.5776 0.8896 35 1 3.0061 -3.5776 -0.8904 36 1 0.5191 -4.1165 -1.5893 37 1 0.0453 -5.7455 -1.0760 38 1 1.4187 -5.2720 -3.3223 39 1 2.7836 -5.4365 -2.1889 40 1 0.4856 -7.4315 -2.2052 41 1 1.8537 -7.6077 -3.3204 42 1 2.1680 -8.9351 -1.3681 43 1 3.3738 -7.6382 -1.4565 44 1 0.8198 -7.2895 0.1577 45 1 2.2543 -8.0912 0.8506 46 1 3.6661 -6.6631 2.0766 47 1 3.2726 -4.9274 2.0484 48 1 1.8917 -6.1285 3.5836 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133522536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:52 Heat of formation + Delta-G solvation = -111.285773 kcal Electronic energy + Delta-G solvation = -25506.161971 eV Core-core repulsion = 21980.819950 eV Total energy + Delta-G solvation = -3525.342020 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.04299 -40.28614 -37.37444 -36.66835 -35.91462 -34.73506 -33.40684 -31.98031 -29.75725 -28.11469 -27.57538 -27.14748 -25.15567 -23.98144 -23.20721 -21.38580 -20.05587 -19.83569 -18.71937 -18.22016 -17.98427 -17.53203 -17.06125 -16.65628 -16.51189 -16.12837 -15.40443 -15.17267 -14.94623 -14.60704 -14.46410 -14.36363 -14.06395 -13.83908 -13.70460 -13.55310 -13.44709 -13.33005 -13.13036 -12.83895 -12.76539 -12.59272 -12.41423 -12.30908 -12.21563 -11.83457 -11.71678 -11.63430 -11.45406 -11.42036 -11.01279 -10.74194 -10.65565 -10.58547 -9.42163 -9.10318 -8.23687 -6.38962 1.35054 1.38208 1.48504 1.83953 2.26730 2.40639 2.88294 3.05525 3.44772 3.75891 3.82320 3.85889 3.89931 4.04348 4.14745 4.20934 4.27816 4.40316 4.42403 4.48708 4.56253 4.60261 4.65541 4.72836 4.80346 4.82265 4.84156 4.93401 4.95985 5.00257 5.00907 5.07401 5.13488 5.22315 5.24096 5.27036 5.35304 5.43419 5.49791 5.55177 5.83694 6.05001 6.13412 6.26858 6.68341 6.78933 7.01472 7.26848 7.48139 8.83417 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.020361 B = 0.003356 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.828554 B = 8340.042781 C = 8961.928553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.495 3.505 13 O -0.601 6.601 14 C -0.113 4.113 15 C 0.083 3.917 16 N -0.536 5.536 17 C 0.054 3.946 18 C -0.151 4.151 19 C -0.113 4.113 20 C -0.122 4.122 21 C -0.097 4.097 22 C 0.092 3.908 23 H 0.043 0.957 24 C 0.082 3.918 25 O -0.570 6.570 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.023 0.977 30 H -0.004 1.004 31 H 0.268 0.732 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.065 0.935 35 H 0.017 0.983 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.032 0.968 48 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.200 -23.882 1.355 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.343 5.343 3 C 0.137 3.863 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.187 1.187 10 H -0.205 1.205 11 H -0.198 1.198 12 C 0.284 3.716 13 O -0.484 6.484 14 C -0.153 4.153 15 C -0.046 4.046 16 N -0.262 5.262 17 C -0.072 4.072 18 C -0.190 4.190 19 C -0.150 4.150 20 C -0.159 4.159 21 C -0.135 4.135 22 C -0.016 4.016 23 H 0.061 0.939 24 C 0.003 3.997 25 O -0.377 6.377 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.041 0.959 30 H 0.015 0.985 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.083 0.917 35 H 0.036 0.964 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.082 0.918 47 H 0.051 0.949 48 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -8.119 -23.767 1.170 25.143 hybrid contribution 1.586 1.079 -0.740 2.056 sum -6.533 -22.688 0.430 23.614 Atomic orbital electron populations 1.21929 0.77810 1.03960 1.02601 1.48205 1.08469 1.06405 1.71180 1.18744 0.91054 0.80477 0.96017 1.21707 1.36929 1.06577 0.93020 0.92920 1.25887 0.94854 0.96403 1.02107 1.70054 1.38964 1.14754 1.33088 0.85394 0.78157 0.78196 0.78929 1.18652 1.20550 1.19831 1.21368 0.87785 0.86701 0.75757 1.90622 1.16717 1.88291 1.52721 1.21560 0.98863 0.88928 1.05945 1.21572 0.94292 0.88449 1.00251 1.61710 1.30010 1.00786 1.33651 1.22033 0.96708 1.01621 0.86880 1.21918 0.99977 0.97136 0.99938 1.20522 1.01294 0.93977 0.99216 1.20641 0.99805 1.00960 0.94528 1.21243 1.01580 0.93974 0.96695 1.21434 0.94441 0.91530 0.94168 0.93868 1.22350 0.87608 0.98928 0.90791 1.86510 1.34924 1.94210 1.22046 0.91156 0.91561 0.88825 0.95886 0.98547 0.92359 0.87329 0.86627 0.91683 0.96431 0.91098 0.89715 0.90930 0.93638 0.91118 0.91730 0.90619 0.92964 0.91044 0.90377 0.91838 0.94930 0.76342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.42 10.24 127.77 1.31 3.73 16 2 N -0.61 -26.74 2.86 -851.16 -2.43 -29.17 16 3 C 0.26 14.36 5.16 85.63 0.44 14.80 16 4 C -0.54 -32.05 9.39 25.60 0.24 -31.81 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.37 5.46 84.65 0.46 0.84 16 7 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 8 Si 0.97 45.48 29.54 68.60 2.03 47.50 16 9 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 12 C 0.49 21.22 7.67 87.66 0.67 21.89 16 13 O -0.60 -32.07 15.56 -3.04 -0.05 -32.11 16 14 C -0.11 -3.34 4.23 29.85 0.13 -3.21 16 15 C 0.08 2.45 4.06 86.30 0.35 2.80 16 16 N -0.54 -12.63 4.34 -875.18 -3.80 -16.43 16 17 C 0.05 1.10 5.01 85.26 0.43 1.53 16 18 C -0.15 -2.88 5.54 30.21 0.17 -2.71 16 19 C -0.11 -1.70 5.30 28.85 0.15 -1.55 16 20 C -0.12 -1.81 5.30 28.86 0.15 -1.66 16 21 C -0.10 -1.66 4.64 30.21 0.14 -1.52 16 22 C 0.09 1.93 1.61 43.89 0.07 2.00 16 23 H 0.04 0.98 6.49 -2.39 -0.02 0.97 16 24 C 0.08 1.61 6.40 71.98 0.46 2.07 16 25 O -0.57 -10.99 13.08 -148.98 -1.95 -12.94 16 26 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.07 2.12 8.07 -2.38 -0.02 2.10 16 28 H 0.09 2.19 6.44 -2.39 -0.02 2.17 16 29 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 30 H 0.00 -0.23 7.42 -2.39 -0.02 -0.25 16 31 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 32 H 0.11 2.75 5.48 -2.39 -0.01 2.73 16 33 H 0.12 2.96 8.11 -2.39 -0.02 2.94 16 34 H 0.06 2.10 6.06 -2.38 -0.01 2.09 16 35 H 0.02 0.59 7.60 -2.39 -0.02 0.57 16 36 H 0.07 1.44 5.80 -2.39 -0.01 1.43 16 37 H 0.08 1.54 6.58 -2.38 -0.02 1.53 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.04 1.04 6.61 -2.39 -0.02 1.03 16 40 H 0.07 0.97 7.52 -2.39 -0.02 0.95 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.05 0.84 7.52 -2.39 -0.02 0.82 16 44 H 0.07 1.35 7.08 -2.38 -0.02 1.34 16 45 H 0.08 1.22 7.71 -2.39 -0.02 1.20 16 46 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 47 H 0.03 0.74 6.22 -2.39 -0.01 0.73 16 48 H 0.39 4.31 9.12 -74.06 -0.68 3.63 16 Total: -1.00 -76.44 364.72 -0.47 -76.91 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.27 Total: 15.83 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 5.17 Total: 7.19 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -5.95 Total: -102.38 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -2.00 Total: -45.05 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -76.44 -0.47 -76.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133522536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.371 kcal (2) G-P(sol) polarization free energy of solvation -76.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds