Wall clock time and date at job start Tue Mar 31 2020 04:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47506 * 2 1 4 4 C 1.46501 * 120.00204 * 89.99622 * 3 2 1 5 5 C 1.50696 * 109.46946 * 90.00412 * 4 3 2 6 6 H 1.07996 * 120.00475 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99818 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99999 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00101 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47438 * 270.00103 * 9 7 5 11 11 H 1.48511 * 109.47087 * 29.99988 * 9 7 5 12 12 H 1.48500 * 109.47170 * 149.99863 * 9 7 5 13 13 C 1.34779 * 119.99789 * 270.00453 * 3 2 1 14 14 O 1.21287 * 119.99888 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99933 * 359.97438 * 13 3 2 16 16 N 1.46904 * 109.46873 * 175.42164 * 15 13 3 17 17 C 1.46852 * 111.00010 * 299.26989 * 16 15 13 18 18 H 1.08997 * 109.46106 * 65.83610 * 17 16 15 19 19 C 1.53004 * 109.46063 * 305.85951 * 17 16 15 20 20 C 1.53037 * 109.52411 * 185.84166 * 17 16 15 21 21 C 1.53123 * 109.27566 * 300.82262 * 20 17 16 22 22 C 1.53123 * 109.16106 * 57.65570 * 21 20 17 23 23 C 1.46846 * 110.99958 * 63.48078 * 16 15 13 24 24 H 1.08990 * 109.46366 * 294.17495 * 23 16 15 25 25 C 1.52996 * 109.46070 * 54.14665 * 23 16 15 26 26 O 1.42897 * 109.47599 * 63.71666 * 25 23 16 27 27 H 1.08992 * 109.46730 * 60.00188 * 1 2 3 28 28 H 1.09004 * 109.47142 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46880 * 300.00115 * 1 2 3 30 30 H 1.08994 * 109.47227 * 239.99189 * 2 1 3 31 31 H 1.09005 * 109.46811 * 120.00020 * 2 1 3 32 32 H 1.09004 * 109.47176 * 329.99955 * 4 3 2 33 33 H 1.09004 * 109.46789 * 210.00500 * 4 3 2 34 34 H 0.96997 * 120.00017 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46963 * 295.41641 * 15 13 3 36 36 H 1.08995 * 109.47180 * 55.42244 * 15 13 3 37 37 H 1.08994 * 109.46870 * 65.70579 * 19 17 16 38 38 H 1.09001 * 109.46899 * 185.70697 * 19 17 16 39 39 H 1.09000 * 109.47055 * 305.70211 * 19 17 16 40 40 H 1.09006 * 109.50268 * 60.76031 * 20 17 16 41 41 H 1.08993 * 109.50546 * 180.88046 * 20 17 16 42 42 H 1.09004 * 109.51678 * 177.55998 * 21 20 17 43 43 H 1.08999 * 109.52153 * 297.68497 * 21 20 17 44 44 H 1.08996 * 109.50249 * 62.28764 * 22 21 20 45 45 H 1.08999 * 109.49773 * 182.36022 * 22 21 20 46 46 H 1.09004 * 109.46768 * 183.71349 * 25 23 16 47 47 H 1.08994 * 109.47420 * 303.71100 * 25 23 16 48 48 H 0.96701 * 114.00562 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.6858 1.8350 1.7037 6 1 4.3430 1.2309 1.0958 7 6 4.1495 2.3905 2.8774 8 7 5.3914 2.1835 3.2574 9 14 3.0136 3.4372 3.9279 10 1 3.1174 4.8571 3.5056 11 1 1.6136 2.9715 3.7585 12 1 3.4066 3.3152 5.3547 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1601 -1.1673 15 6 1.9922 1.3058 -2.4723 16 7 2.2048 2.2391 -3.5867 17 6 1.2819 3.3783 -3.5024 18 1 1.5147 3.9695 -2.6168 19 6 -0.1559 2.8637 -3.4084 20 6 1.4308 4.2506 -4.7511 21 6 2.8759 4.7467 -4.8517 22 6 3.8196 3.5414 -4.8893 23 6 3.6015 2.6898 -3.6366 24 1 3.8232 3.2840 -2.7503 25 6 4.5284 1.4733 -3.6796 26 8 4.2973 0.7406 -4.8844 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.5817 1.6878 2.0284 33 1 2.0956 3.1410 1.1383 34 1 5.7177 2.5746 4.0829 35 1 2.6797 0.4653 -2.5662 36 1 0.9657 0.9401 -2.4955 37 1 -0.2894 2.3282 -2.4686 38 1 -0.8466 3.7060 -3.4480 39 1 -0.3560 2.1903 -4.2419 40 1 1.1849 3.6639 -5.6363 41 1 0.7569 5.1044 -4.6810 42 1 2.9970 5.3328 -5.7628 43 1 3.1093 5.3665 -3.9861 44 1 3.6113 2.9437 -5.7766 45 1 4.8523 3.8888 -4.9187 46 1 5.5660 1.8060 -3.6500 47 1 4.3276 0.8330 -2.8207 48 1 4.8516 -0.0462 -4.9788 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159089965.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:19 Heat of formation + Delta-G solvation = -78.337172 kcal Electronic energy + Delta-G solvation = -26925.966190 eV Core-core repulsion = 23402.052928 eV Total energy + Delta-G solvation = -3523.913262 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.39950 -38.20072 -36.32217 -35.40472 -33.47608 -32.67458 -32.43363 -30.37596 -28.72651 -27.60059 -26.21055 -25.74794 -23.01226 -22.63375 -21.22643 -20.81952 -19.59003 -18.24200 -17.18231 -16.95668 -16.50836 -16.04562 -15.79040 -15.01987 -14.73164 -14.33593 -14.08835 -13.99125 -13.73367 -13.53491 -13.08040 -12.92957 -12.79264 -12.57690 -12.35084 -12.19204 -11.89462 -11.81915 -11.72736 -11.59237 -11.38077 -11.32503 -10.99622 -10.75952 -10.54552 -10.49791 -10.47474 -10.15517 -10.06704 -10.04150 -9.71453 -9.63137 -9.51188 -8.62821 -7.75876 -7.63757 -6.12922 -4.11498 3.25238 3.25849 3.31519 3.33428 3.82545 4.04491 4.35748 4.49644 4.91586 4.98671 5.01110 5.10074 5.18372 5.21509 5.26771 5.42789 5.46501 5.53215 5.55447 5.61746 5.65056 5.70189 5.72781 5.85347 5.92664 5.96241 5.98890 6.00400 6.10682 6.11952 6.17630 6.21917 6.27481 6.37002 6.39289 6.50782 6.67407 6.71911 6.91050 7.27301 7.33750 7.37216 7.57732 7.80007 8.22605 8.43008 8.87890 8.94163 9.47773 11.00415 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.015413 B = 0.005122 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.267070 B = 5464.906875 C = 5724.092042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.591 5.591 4 C 0.215 3.785 5 C -0.527 4.527 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.266 1.266 12 H -0.285 1.285 13 C 0.477 3.523 14 O -0.540 6.540 15 C 0.027 3.973 16 N -0.494 5.494 17 C 0.061 3.939 18 H 0.075 0.925 19 C -0.145 4.145 20 C -0.105 4.105 21 C -0.122 4.122 22 C -0.102 4.102 23 C 0.070 3.930 24 H 0.093 0.907 25 C 0.080 3.920 26 O -0.558 6.558 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.028 0.972 33 H 0.034 0.966 34 H 0.264 0.736 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.047 0.953 47 H 0.046 0.954 48 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.436 -2.893 -14.706 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.322 5.322 4 C 0.094 3.906 5 C -0.565 4.565 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.191 1.191 12 H -0.210 1.210 13 C 0.263 3.737 14 O -0.419 6.419 15 C -0.105 4.105 16 N -0.217 5.217 17 C -0.046 4.046 18 H 0.092 0.908 19 C -0.202 4.202 20 C -0.143 4.143 21 C -0.159 4.159 22 C -0.140 4.140 23 C -0.038 4.038 24 H 0.110 0.890 25 C 0.002 3.998 26 O -0.362 6.362 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -8.633 -2.004 -15.083 17.494 hybrid contribution 0.204 0.373 1.750 1.801 sum -8.429 -1.631 -13.333 15.857 Atomic orbital electron populations 1.22234 0.96710 1.01681 1.02172 1.21445 0.93470 0.83881 1.03081 1.48122 1.63527 1.13314 1.07271 1.19628 0.97243 0.93328 0.80389 1.21297 0.95291 1.32835 1.07084 0.90910 1.24856 0.94977 0.95810 0.97350 1.69893 1.15126 1.44976 1.23601 0.86855 0.81471 0.81572 0.79802 1.19989 1.19129 1.21048 1.21791 0.78193 0.87457 0.86222 1.90554 1.46143 1.18343 1.86897 1.22473 1.03809 0.97060 0.87132 1.62412 1.04108 1.15971 1.39228 1.21871 0.91883 0.92048 0.98842 0.90752 1.21885 0.95609 1.01130 1.01595 1.21558 0.96426 0.98297 0.98016 1.21583 0.95338 0.97665 1.01355 1.21452 0.98419 0.95712 0.98385 1.22014 0.87602 0.94508 0.99696 0.89001 1.22327 0.97610 0.93188 0.86697 1.86585 1.65875 1.42482 1.41263 0.92954 0.91864 0.92281 0.91391 0.89749 0.95452 0.94782 0.92565 0.88202 0.88258 0.93070 0.92509 0.92062 0.91629 0.92156 0.92339 0.92100 0.90726 0.92280 0.93506 0.93626 0.78675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.19 37.16 0.38 -1.73 16 2 C 0.11 1.60 5.87 -4.04 -0.02 1.58 16 3 N -0.59 -11.75 2.46 -175.06 -0.43 -12.18 16 4 C 0.22 5.18 4.23 -5.20 -0.02 5.16 16 5 C -0.53 -14.90 9.94 -34.44 -0.34 -15.24 16 6 H 0.07 2.26 8.06 -52.49 -0.42 1.83 16 7 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 9 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.48 9.30 7.03 -10.98 -0.08 9.22 16 14 O -0.54 -12.43 11.21 5.55 0.06 -12.37 16 15 C 0.03 0.41 3.39 -4.97 -0.02 0.39 16 16 N -0.49 -7.54 4.46 -220.18 -0.98 -8.52 16 17 C 0.06 0.92 2.00 -67.72 -0.14 0.78 16 18 H 0.07 1.36 5.73 -51.93 -0.30 1.07 16 19 C -0.14 -1.84 8.56 37.16 0.32 -1.52 16 20 C -0.11 -1.36 5.37 -26.65 -0.14 -1.50 16 21 C -0.12 -1.60 6.00 -26.60 -0.16 -1.76 16 22 C -0.10 -1.42 5.20 -26.65 -0.14 -1.56 16 23 C 0.07 1.11 1.83 -67.72 -0.12 0.99 16 24 H 0.09 1.79 5.63 -51.93 -0.29 1.50 16 25 C 0.08 1.15 6.25 37.16 0.23 1.38 16 26 O -0.56 -7.15 12.75 -35.23 -0.45 -7.60 16 27 H 0.05 0.62 7.14 -51.93 -0.37 0.25 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.88 6.57 -51.93 -0.34 0.54 16 31 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 32 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 33 H 0.03 0.89 6.85 -51.93 -0.36 0.53 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.10 1.46 5.42 -51.93 -0.28 1.18 16 36 H 0.10 1.34 5.09 -51.93 -0.26 1.07 16 37 H 0.05 0.67 6.62 -51.93 -0.34 0.33 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.07 7.57 -51.93 -0.39 0.68 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.05 0.69 6.03 -51.93 -0.31 0.38 16 48 H 0.37 3.08 9.12 45.56 0.42 3.50 16 LS Contribution 359.15 15.07 5.41 5.41 Total: -1.00 -33.18 359.15 -8.08 -41.25 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -7.44 Total: 5.62 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -0.35 Total: -1.82 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.64 Total: -47.38 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.39 Total: -19.97 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.18 -8.08 -41.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159089965.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.083 kcal (2) G-P(sol) polarization free energy of solvation -33.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds