Wall clock time and date at job start Tue Mar 31 2020 04:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47506 * 2 1 4 4 C 1.46501 * 120.00204 * 89.99622 * 3 2 1 5 5 C 1.50696 * 109.46946 * 90.00412 * 4 3 2 6 6 H 1.07996 * 120.00475 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99818 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99999 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00101 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47438 * 270.00103 * 9 7 5 11 11 H 1.48511 * 109.47087 * 29.99988 * 9 7 5 12 12 H 1.48500 * 109.47170 * 149.99863 * 9 7 5 13 13 C 1.34779 * 119.99789 * 270.00453 * 3 2 1 14 14 O 1.21287 * 119.99888 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99933 * 359.97438 * 13 3 2 16 16 N 1.46904 * 109.46873 * 175.42164 * 15 13 3 17 17 C 1.46852 * 111.00010 * 299.26989 * 16 15 13 18 18 H 1.08997 * 109.46106 * 65.83610 * 17 16 15 19 19 C 1.53004 * 109.46063 * 305.85951 * 17 16 15 20 20 C 1.53037 * 109.52411 * 185.84166 * 17 16 15 21 21 C 1.53123 * 109.27566 * 300.82262 * 20 17 16 22 22 C 1.53123 * 109.16106 * 57.65570 * 21 20 17 23 23 C 1.46846 * 110.99958 * 63.48078 * 16 15 13 24 24 H 1.08990 * 109.46366 * 294.17495 * 23 16 15 25 25 C 1.52996 * 109.46070 * 54.14665 * 23 16 15 26 26 O 1.42897 * 109.47599 * 63.71666 * 25 23 16 27 27 H 1.08992 * 109.46730 * 60.00188 * 1 2 3 28 28 H 1.09004 * 109.47142 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46880 * 300.00115 * 1 2 3 30 30 H 1.08994 * 109.47227 * 239.99189 * 2 1 3 31 31 H 1.09005 * 109.46811 * 120.00020 * 2 1 3 32 32 H 1.09004 * 109.47176 * 329.99955 * 4 3 2 33 33 H 1.09004 * 109.46789 * 210.00500 * 4 3 2 34 34 H 0.96997 * 120.00017 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46963 * 295.41641 * 15 13 3 36 36 H 1.08995 * 109.47180 * 55.42244 * 15 13 3 37 37 H 1.08994 * 109.46870 * 65.70579 * 19 17 16 38 38 H 1.09001 * 109.46899 * 185.70697 * 19 17 16 39 39 H 1.09000 * 109.47055 * 305.70211 * 19 17 16 40 40 H 1.09006 * 109.50268 * 60.76031 * 20 17 16 41 41 H 1.08993 * 109.50546 * 180.88046 * 20 17 16 42 42 H 1.09004 * 109.51678 * 177.55998 * 21 20 17 43 43 H 1.08999 * 109.52153 * 297.68497 * 21 20 17 44 44 H 1.08996 * 109.50249 * 62.28764 * 22 21 20 45 45 H 1.08999 * 109.49773 * 182.36022 * 22 21 20 46 46 H 1.09004 * 109.46768 * 183.71349 * 25 23 16 47 47 H 1.08994 * 109.47420 * 303.71100 * 25 23 16 48 48 H 0.96701 * 114.00562 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.6858 1.8350 1.7037 6 1 4.3430 1.2309 1.0958 7 6 4.1495 2.3905 2.8774 8 7 5.3914 2.1835 3.2574 9 14 3.0136 3.4372 3.9279 10 1 3.1174 4.8571 3.5056 11 1 1.6136 2.9715 3.7585 12 1 3.4066 3.3152 5.3547 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1601 -1.1673 15 6 1.9922 1.3058 -2.4723 16 7 2.2048 2.2391 -3.5867 17 6 1.2819 3.3783 -3.5024 18 1 1.5147 3.9695 -2.6168 19 6 -0.1559 2.8637 -3.4084 20 6 1.4308 4.2506 -4.7511 21 6 2.8759 4.7467 -4.8517 22 6 3.8196 3.5414 -4.8893 23 6 3.6015 2.6898 -3.6366 24 1 3.8232 3.2840 -2.7503 25 6 4.5284 1.4733 -3.6796 26 8 4.2973 0.7406 -4.8844 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.5817 1.6878 2.0284 33 1 2.0956 3.1410 1.1383 34 1 5.7177 2.5746 4.0829 35 1 2.6797 0.4653 -2.5662 36 1 0.9657 0.9401 -2.4955 37 1 -0.2894 2.3282 -2.4686 38 1 -0.8466 3.7060 -3.4480 39 1 -0.3560 2.1903 -4.2419 40 1 1.1849 3.6639 -5.6363 41 1 0.7569 5.1044 -4.6810 42 1 2.9970 5.3328 -5.7628 43 1 3.1093 5.3665 -3.9861 44 1 3.6113 2.9437 -5.7766 45 1 4.8523 3.8888 -4.9187 46 1 5.5660 1.8060 -3.6500 47 1 4.3276 0.8330 -2.8207 48 1 4.8516 -0.0462 -4.9788 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159089965.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:18 Heat of formation + Delta-G solvation = -103.680906 kcal Electronic energy + Delta-G solvation = -26927.065176 eV Core-core repulsion = 23402.052928 eV Total energy + Delta-G solvation = -3525.012249 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.75154 -39.57406 -37.41380 -36.92556 -35.00324 -34.47135 -33.55639 -31.89705 -30.21255 -28.93203 -27.59490 -26.87296 -24.55933 -24.11619 -22.54554 -21.96873 -20.84266 -19.72026 -19.13447 -18.24463 -17.97494 -17.33736 -17.14334 -16.51112 -16.29725 -15.72924 -15.40356 -15.34960 -14.92619 -14.75114 -14.68387 -14.26955 -14.11914 -13.87493 -13.74142 -13.52896 -13.32558 -13.22836 -12.87054 -12.78016 -12.74772 -12.55897 -12.40069 -12.38217 -12.10568 -11.92440 -11.79214 -11.64121 -11.56601 -11.23057 -11.17166 -11.06009 -10.86634 -10.75064 -9.40501 -9.01974 -8.37667 -6.41978 1.27924 1.31402 1.39888 1.74881 2.26402 2.32473 2.84705 2.96745 3.44574 3.69411 3.82465 3.89628 3.98170 4.04021 4.12500 4.30120 4.35483 4.38968 4.42304 4.48244 4.54436 4.60291 4.64798 4.72065 4.75460 4.80535 4.85873 4.89107 4.95092 4.96742 4.99460 5.05708 5.09487 5.11003 5.22125 5.28741 5.36374 5.38295 5.44458 5.56830 5.66970 6.05241 6.15516 6.21672 6.58797 6.71414 6.95812 7.18837 7.41633 8.79104 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.015413 B = 0.005122 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.267070 B = 5464.906875 C = 5724.092042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 N -0.599 5.599 4 C 0.227 3.773 5 C -0.531 4.531 6 H 0.029 0.971 7 C 0.012 3.988 8 N -0.944 5.944 9 Si 0.945 3.055 10 H -0.279 1.279 11 H -0.241 1.241 12 H -0.274 1.274 13 C 0.470 3.530 14 O -0.582 6.582 15 C 0.038 3.962 16 N -0.483 5.483 17 C 0.057 3.943 18 H 0.035 0.965 19 C -0.138 4.138 20 C -0.100 4.100 21 C -0.122 4.122 22 C -0.095 4.095 23 C 0.065 3.935 24 H 0.049 0.951 25 C 0.088 3.912 26 O -0.560 6.560 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.014 0.986 34 H 0.268 0.732 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.038 0.962 44 H 0.079 0.921 45 H 0.061 0.939 46 H 0.048 0.952 47 H 0.033 0.967 48 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.029 -3.695 -16.223 19.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.025 4.025 3 N -0.331 5.331 4 C 0.104 3.896 5 C -0.570 4.570 6 H 0.047 0.953 7 C -0.186 4.186 8 N -0.584 5.584 9 Si 0.768 3.232 10 H -0.204 1.204 11 H -0.164 1.164 12 H -0.199 1.199 13 C 0.258 3.742 14 O -0.463 6.463 15 C -0.093 4.093 16 N -0.206 5.206 17 C -0.051 4.051 18 H 0.052 0.948 19 C -0.196 4.196 20 C -0.138 4.138 21 C -0.159 4.159 22 C -0.133 4.133 23 C -0.043 4.043 24 H 0.067 0.933 25 C 0.009 3.991 26 O -0.367 6.367 27 H 0.079 0.921 28 H 0.114 0.886 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.032 0.968 34 H 0.077 0.923 35 H 0.128 0.872 36 H 0.144 0.856 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.057 0.943 44 H 0.097 0.903 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.051 0.949 48 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -11.246 -2.863 -16.628 20.277 hybrid contribution 1.121 0.570 2.150 2.491 sum -10.125 -2.294 -14.478 17.815 Atomic orbital electron populations 1.22158 0.93919 1.03742 1.01979 1.21760 0.95702 0.81265 1.03787 1.48250 1.63794 1.15065 1.05969 1.19235 0.94720 0.92795 0.82875 1.21520 0.96958 1.31898 1.06577 0.95310 1.25808 0.96630 0.97189 0.98934 1.70041 1.17307 1.46553 1.24504 0.85758 0.80489 0.78971 0.77985 1.20441 1.16396 1.19875 1.22651 0.77039 0.87122 0.87343 1.90559 1.47729 1.20438 1.87590 1.22558 1.05501 0.96766 0.84497 1.62534 1.03776 1.16051 1.38284 1.21928 0.93146 0.91851 0.98215 0.94752 1.21844 0.94044 1.01862 1.01833 1.21549 0.96377 0.98570 0.97314 1.21596 0.95546 0.97303 1.01502 1.21405 0.98925 0.95726 0.97254 1.21942 0.88434 0.95052 0.98879 0.93344 1.22097 0.97302 0.92700 0.86972 1.86521 1.66646 1.43542 1.40000 0.92063 0.88610 0.93552 0.88857 0.90985 0.93855 0.96836 0.92300 0.87226 0.85572 0.93713 0.91231 0.90458 0.90407 0.90795 0.89985 0.94274 0.90278 0.92003 0.93346 0.94868 0.76219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 10.19 71.98 0.73 -2.77 16 2 C 0.10 2.82 5.87 86.38 0.51 3.33 16 3 N -0.60 -23.99 2.46 -826.15 -2.03 -26.02 16 4 C 0.23 11.08 4.23 85.63 0.36 11.44 16 5 C -0.53 -31.23 9.94 25.60 0.25 -30.98 16 6 H 0.03 1.89 8.06 -2.91 -0.02 1.86 16 7 C 0.01 0.74 5.47 84.66 0.46 1.20 16 8 N -0.94 -59.73 13.96 21.45 0.30 -59.43 16 9 Si 0.94 44.95 27.47 68.60 1.88 46.83 16 10 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 11 H -0.24 -10.35 6.54 99.48 0.65 -9.70 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 C 0.47 18.62 7.03 87.66 0.62 19.24 16 14 O -0.58 -28.11 11.21 -3.05 -0.03 -28.15 16 15 C 0.04 1.12 3.39 85.56 0.29 1.41 16 16 N -0.48 -14.31 4.46 -850.53 -3.79 -18.10 16 17 C 0.06 1.64 2.00 44.94 0.09 1.73 16 18 H 0.03 1.30 5.73 -2.39 -0.01 1.29 16 19 C -0.14 -3.18 8.56 71.98 0.62 -2.56 16 20 C -0.10 -2.42 5.37 30.65 0.16 -2.26 16 21 C -0.12 -3.11 6.00 30.68 0.18 -2.92 16 22 C -0.10 -2.60 5.20 30.65 0.16 -2.44 16 23 C 0.07 2.11 1.83 44.94 0.08 2.19 16 24 H 0.05 2.02 5.63 -2.39 -0.01 2.01 16 25 C 0.09 2.52 6.25 71.98 0.45 2.97 16 26 O -0.56 -13.29 12.75 -148.98 -1.90 -15.19 16 27 H 0.06 1.24 7.14 -2.39 -0.02 1.22 16 28 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 2.21 6.57 -2.39 -0.02 2.19 16 31 H 0.07 2.26 8.07 -2.38 -0.02 2.24 16 32 H 0.04 1.98 7.13 -2.38 -0.02 1.96 16 33 H 0.01 0.72 6.85 -2.38 -0.02 0.70 16 34 H 0.27 15.79 8.31 -92.71 -0.77 15.01 16 35 H 0.11 3.04 5.42 -2.39 -0.01 3.02 16 36 H 0.13 3.03 5.09 -2.39 -0.01 3.02 16 37 H 0.04 1.07 6.62 -2.39 -0.02 1.06 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 43 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.08 2.11 7.57 -2.39 -0.02 2.09 16 45 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 47 H 0.03 1.02 6.03 -2.39 -0.01 1.01 16 48 H 0.39 5.64 9.12 -74.06 -0.68 4.97 16 Total: -1.00 -76.07 359.15 -0.38 -76.46 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.22 Total: 24.04 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 4.97 Total: -0.43 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -5.52 Total: -103.56 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -1.93 Total: -43.34 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.83 kcal Total: -76.07 -0.38 -76.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159089965.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.225 kcal (2) G-P(sol) polarization free energy of solvation -76.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds