Wall clock time and date at job start Tue Mar 31 2020 03:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47034 * 2 1 4 4 C 1.46504 * 120.00436 * 89.99649 * 3 2 1 5 5 C 1.50699 * 109.47161 * 89.99847 * 4 3 2 6 6 H 1.08006 * 119.99944 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99939 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99908 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00315 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46787 * 89.99844 * 9 7 5 11 11 H 1.48496 * 109.47631 * 210.00050 * 9 7 5 12 12 H 1.48502 * 109.47080 * 330.00386 * 9 7 5 13 13 C 1.34775 * 119.99922 * 269.99842 * 3 2 1 14 14 O 1.21280 * 120.00322 * 179.97438 * 13 3 2 15 15 C 1.50702 * 120.00254 * 359.97438 * 13 3 2 16 16 N 1.46895 * 109.47545 * 180.02562 * 15 13 3 17 17 C 1.47847 * 110.99607 * 291.55939 * 16 15 13 18 18 C 1.54905 * 104.79531 * 213.63577 * 17 16 15 19 19 C 1.55138 * 101.65630 * 37.07061 * 18 17 16 20 20 C 1.47444 * 111.00355 * 170.71965 * 16 15 13 21 21 C 1.52992 * 109.88738 * 242.66492 * 20 16 15 22 22 C 1.52993 * 109.47620 * 54.45028 * 21 20 16 23 23 C 1.52998 * 109.88425 * 3.68585 * 20 16 15 24 24 O 1.42899 * 109.47076 * 176.03258 * 23 20 16 25 25 H 1.08994 * 109.47024 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47549 * 300.00635 * 1 2 3 27 27 H 1.09009 * 109.46953 * 60.00258 * 1 2 3 28 28 H 1.08996 * 109.47344 * 239.99872 * 2 1 3 29 29 H 1.09001 * 109.46883 * 119.99483 * 2 1 3 30 30 H 1.09002 * 109.47217 * 210.00384 * 4 3 2 31 31 H 1.09000 * 109.46822 * 329.99823 * 4 3 2 32 32 H 0.96994 * 119.99909 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47002 * 300.00323 * 15 13 3 34 34 H 1.08997 * 109.47060 * 59.99801 * 15 13 3 35 35 H 1.08993 * 110.37680 * 332.46671 * 17 16 15 36 36 H 1.09005 * 110.37414 * 94.80747 * 17 16 15 37 37 H 1.09002 * 110.99123 * 278.97710 * 18 17 16 38 38 H 1.09003 * 110.98865 * 155.16613 * 18 17 16 39 39 H 1.08991 * 110.70742 * 205.96340 * 19 18 17 40 40 H 1.09005 * 110.70204 * 82.72779 * 19 18 17 41 41 H 1.09000 * 109.46987 * 174.45181 * 21 20 16 42 42 H 1.09008 * 109.46959 * 294.44754 * 21 20 16 43 43 H 1.09003 * 109.47143 * 56.43388 * 22 21 20 44 44 H 1.09003 * 109.47550 * 176.43819 * 22 21 20 45 45 H 1.09007 * 109.47210 * 296.43772 * 22 21 20 46 46 H 1.09000 * 109.47586 * 296.03142 * 23 20 16 47 47 H 1.09008 * 109.47368 * 56.03507 * 23 20 16 48 48 H 0.96699 * 114.00244 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0720 1.2687 5 6 3.6857 1.8352 1.7038 6 1 4.3428 1.2310 1.0959 7 6 4.1489 2.3899 2.8780 8 7 5.3908 2.1828 3.2580 9 14 3.0126 3.4355 3.9291 10 1 2.3068 2.5693 4.9073 11 1 3.8100 4.4556 4.6562 12 1 2.0175 4.1127 3.0594 13 6 2.2429 2.0165 -1.1672 14 8 2.6467 3.1601 -1.1673 15 6 1.9924 1.3059 -2.4723 16 7 2.3110 2.2057 -3.5889 17 6 1.3440 3.3216 -3.6626 18 6 1.2053 3.6257 -5.1752 19 6 1.2799 2.2029 -5.7890 20 6 2.2912 1.4817 -4.8732 21 6 3.6824 1.5115 -5.5090 22 6 4.7099 0.9697 -4.5133 23 6 1.8533 0.0333 -4.6474 24 8 1.7479 -0.6343 -5.9064 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0954 3.1412 1.1383 31 1 1.5815 1.6879 2.0283 32 1 5.7168 2.5734 4.0838 33 1 2.6229 0.4187 -2.5298 34 1 0.9446 1.0113 -2.5303 35 1 0.3830 3.0191 -3.2467 36 1 1.7296 4.1935 -3.1340 37 1 2.0301 4.2460 -5.5260 38 1 0.2459 4.0951 -5.3927 39 1 1.6491 2.2441 -6.8137 40 1 0.3064 1.7141 -5.7483 41 1 3.6850 0.8930 -6.4065 42 1 3.9390 2.5373 -5.7739 43 1 4.4187 -0.0329 -4.2000 44 1 5.6906 0.9316 -4.9877 45 1 4.7526 1.6243 -3.6428 46 1 2.5899 -0.4765 -4.0264 47 1 0.8849 0.0202 -4.1471 48 1 1.4734 -1.5591 -5.8396 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189651776.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:01 Heat of formation + Delta-G solvation = -70.138387 kcal Electronic energy + Delta-G solvation = -26496.201196 eV Core-core repulsion = 22972.643460 eV Total energy + Delta-G solvation = -3523.557736 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.49566 -38.68624 -36.44722 -35.31572 -33.06450 -32.85940 -32.22102 -30.33957 -28.92157 -28.20081 -26.01248 -25.21053 -23.10269 -22.98144 -21.93700 -21.26337 -18.77739 -18.36713 -17.54785 -16.89254 -16.33677 -16.16806 -15.82070 -15.09200 -14.86969 -14.69852 -14.36390 -13.98100 -13.53599 -13.50761 -13.22900 -13.04280 -12.92592 -12.51511 -12.39955 -12.35424 -12.06535 -11.98064 -11.77068 -11.49220 -11.39906 -11.14328 -11.05322 -10.95881 -10.74009 -10.71450 -10.61713 -10.47867 -10.38301 -10.08761 -9.96428 -9.51255 -8.95573 -8.57179 -8.15672 -7.68287 -6.06446 -4.04760 3.27446 3.35525 3.38060 3.40392 3.54965 3.91396 4.23782 4.41424 4.52534 4.68004 4.79150 4.93574 5.05921 5.11268 5.16594 5.23320 5.25761 5.28744 5.34801 5.49261 5.51811 5.52488 5.56809 5.65972 5.69734 5.73937 5.82852 5.91747 5.98261 6.08725 6.10901 6.17501 6.21744 6.29244 6.34276 6.40011 6.65231 6.67981 6.96431 7.04677 7.09810 7.38009 7.41727 7.63975 8.29368 8.49958 8.96737 9.06186 9.54160 11.07089 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.019525 B = 0.004283 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.691204 B = 6535.212626 C = 6669.334484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.596 5.596 4 C 0.219 3.781 5 C -0.526 4.526 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.509 3.491 14 O -0.520 6.520 15 C 0.025 3.975 16 N -0.489 5.489 17 C 0.048 3.952 18 C -0.132 4.132 19 C -0.121 4.121 20 C 0.103 3.897 21 C -0.093 4.093 22 C -0.149 4.149 23 C 0.062 3.938 24 O -0.567 6.567 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.023 0.977 32 H 0.264 0.736 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.039 0.961 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.046 0.954 45 H 0.072 0.928 46 H 0.057 0.943 47 H 0.044 0.956 48 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.515 -6.160 -16.947 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.329 5.329 4 C 0.098 3.902 5 C -0.565 4.565 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.189 1.189 13 C 0.295 3.705 14 O -0.395 6.395 15 C -0.106 4.106 16 N -0.214 5.214 17 C -0.079 4.079 18 C -0.170 4.170 19 C -0.160 4.160 20 C 0.013 3.987 21 C -0.131 4.131 22 C -0.206 4.206 23 C -0.016 4.016 24 O -0.371 6.371 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -10.470 -4.709 -16.903 20.433 hybrid contribution -1.449 -0.578 0.967 1.835 sum -11.919 -5.287 -15.936 20.591 Atomic orbital electron populations 1.22240 0.96926 1.01492 1.02138 1.21411 0.93241 0.84169 1.02937 1.47929 1.64721 1.13254 1.07024 1.19613 0.97054 0.93562 0.79980 1.21336 0.95402 1.32743 1.06998 0.90770 1.24852 0.94992 0.95773 0.97378 1.69899 1.15189 1.45057 1.23504 0.86875 0.81322 0.80919 0.80784 1.20182 1.20961 1.18901 1.20125 0.78646 0.87135 0.84587 1.90658 1.44186 1.17852 1.86803 1.22391 1.00154 0.96850 0.91184 1.63423 1.49358 1.08374 1.00253 1.23117 0.93328 0.95542 0.95944 1.22763 1.02023 0.96858 0.95379 1.22712 0.98598 0.95232 0.99441 1.21771 0.96501 0.90424 0.89983 1.21407 0.92634 1.01278 0.97754 1.21735 0.97716 1.00698 1.00460 1.22914 0.99233 0.93875 0.85607 1.86458 1.91937 1.28526 1.30161 0.92020 0.92116 0.93274 0.91817 0.89663 0.94234 0.95889 0.92613 0.88207 0.92498 0.94239 0.88605 0.90560 0.91042 0.90581 0.91619 0.91612 0.91825 0.93755 0.93451 0.90905 0.92532 0.93751 0.77674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 10.24 37.16 0.38 -1.68 16 2 C 0.11 1.61 5.93 -4.04 -0.02 1.59 16 3 N -0.60 -12.05 2.46 -175.06 -0.43 -12.48 16 4 C 0.22 5.32 4.23 -5.19 -0.02 5.30 16 5 C -0.53 -15.15 9.94 -34.44 -0.34 -15.49 16 6 H 0.07 2.35 8.06 -52.48 -0.42 1.93 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 9 Si 0.87 21.64 27.47 -169.99 -4.67 16.97 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 13 C 0.51 10.27 7.46 -10.98 -0.08 10.19 16 14 O -0.52 -12.70 14.56 5.56 0.08 -12.62 16 15 C 0.03 0.38 2.72 -4.98 -0.01 0.36 16 16 N -0.49 -7.18 3.60 -217.18 -0.78 -7.96 16 17 C 0.05 0.68 5.72 -2.30 -0.01 0.66 16 18 C -0.13 -1.47 7.08 -24.59 -0.17 -1.65 16 19 C -0.12 -1.32 5.65 -24.91 -0.14 -1.46 16 20 C 0.10 1.24 0.64 -130.62 -0.08 1.16 16 21 C -0.09 -1.14 4.98 -26.74 -0.13 -1.28 16 22 C -0.15 -1.98 9.50 37.15 0.35 -1.63 16 23 C 0.06 0.64 4.39 37.16 0.16 0.81 16 24 O -0.57 -5.32 12.64 -35.23 -0.45 -5.76 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.57 7.22 -51.92 -0.38 0.19 16 28 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16 29 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 30 H 0.04 1.05 6.48 -51.93 -0.34 0.71 16 31 H 0.02 0.53 7.50 -51.93 -0.39 0.14 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 33 H 0.10 1.38 5.45 -51.93 -0.28 1.10 16 34 H 0.06 0.72 5.77 -51.93 -0.30 0.43 16 35 H 0.04 0.54 7.64 -51.93 -0.40 0.14 16 36 H 0.10 1.60 7.34 -51.93 -0.38 1.22 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.79 7.83 -51.93 -0.41 0.38 16 40 H 0.07 0.69 7.86 -51.93 -0.41 0.28 16 41 H 0.07 0.77 7.62 -51.93 -0.40 0.38 16 42 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 43 H 0.04 0.55 6.44 -51.93 -0.33 0.22 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 1.18 7.61 -51.93 -0.40 0.79 16 46 H 0.06 0.59 4.92 -51.93 -0.26 0.33 16 47 H 0.04 0.43 6.73 -51.92 -0.35 0.08 16 48 H 0.38 1.91 9.12 45.56 0.42 2.33 16 LS Contribution 364.63 15.07 5.49 5.49 Total: -1.00 -34.51 364.63 -7.68 -42.19 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.47 Total: 2.35 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -0.23 Total: -1.09 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.44 Total: -47.52 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.36 Total: -18.38 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.51 -7.68 -42.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189651776.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.952 kcal (2) G-P(sol) polarization free energy of solvation -34.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds